Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/avogadro2-libs.spec'], printOutput=Falselogger=uid=1000nspawn_args=[]shell=Falsetimeout=172800user='mockbuild'env={'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}gid=425chrootPath='/var/lib/mock/f27-build-8978307-765423/root') Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/avogadro2-libs.spec'] with env {'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False Building target platforms: armv7hl Building for target armv7hl Wrote: /builddir/build/SRPMS/avogadro2-libs-1.90.0-7.fc27.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/avogadro2-libs.spec'], printOutput=Falselogger=uid=1000nspawn_args=[]shell=Falsetimeout=172800user='mockbuild'env={'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}gid=425chrootPath='/var/lib/mock/f27-build-8978307-765423/root') Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/avogadro2-libs.spec'] with env {'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False Building target platforms: armv7hl Building for target armv7hl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.X7bdAP + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadrolibs-1.90.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/avogadrolibs-1.90.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.90.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (avogadro2-libs-fix_gcc7_compatibility.patch):' Patch #0 (avogadro2-libs-fix_gcc7_compatibility.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file cmake/GenerateExportHeader.cmake + echo 'Patch #1 (avogadro2-libs-fix_AvogadroLibsConfig.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 Patch #1 (avogadro2-libs-fix_AvogadroLibsConfig.patch): patching file cmake/AvogadroLibsConfig.cmake.in + echo 'Patch #2 (avogadro2-libs-set_jsoncpp_path.patch):' Patch #2 (avogadro2-libs-set_jsoncpp_path.patch): + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file thirdparty/jsoncpp/CMakeLists.txt Patch #3 (avogadro2-libs-set_pythonpath.patch): + echo 'Patch #3 (avogadro2-libs-set_pythonpath.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file avogadro/qtplugins/quantuminput/CMakeLists.txt patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.axNM9Y + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.90.0 + mkdir build + pushd build ~/build/BUILD/avogadrolibs-1.90.0/build ~/build/BUILD/avogadrolibs-1.90.0 + export 'LDFLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed' + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_INCLUDEDIR:PATH=/usr/include/avogadro2 -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.6 -DUSE_BOOST_PYTHON:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DSPGLIB_LIBRARY:FILEPATH=/usr/lib/libsymspg.so -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON .. -- The C compiler identification is GNU 7.1.1 -- The CXX compiler identification is GNU 7.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Performing Test HAVE_GCC_STD_CPP_03 -- Performing Test HAVE_GCC_STD_CPP_03 - Success -- Performing Test HAVE_GCC_STD_CPP_11 -- Performing Test HAVE_GCC_STD_CPP_11 - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.90.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found SPGLIB: /usr/include -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/libhdf5.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.8.18") found components: C -- Found OpenGL: /usr/lib/libGL.so -- Found GLEW: /usr/include Adding cylinders_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylinders_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/cylinders_fs.h cylinders_fs Adding cylinders_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylinders_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/cylinders_vs.h cylinders_vs Adding linestrip_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestrip_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/linestrip_fs.h linestrip_fs Adding linestrip_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestrip_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/linestrip_vs.h linestrip_vs Adding mesh_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/mesh_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/mesh_fs.h mesh_fs Adding mesh_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/mesh_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/mesh_vs.h mesh_vs Adding spheres_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/spheres_fs.h spheres_fs Adding spheres_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/spheres_vs.h spheres_vs Adding sphere_ao_depth_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs Adding sphere_ao_depth_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs Adding sphere_ao_bake_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs Adding sphere_ao_bake_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_bake_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs Adding sphere_ao_render_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs Adding sphere_ao_render_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs Adding textlabelbase_fs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs Adding textlabelbase_vs.glsl to encoder... /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.6.1", minimum required is "2") Using automoc for Qt library Using automoc for Qt library Using automoc for Qt library -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.6.1", minimum required is "3") -- Found PythonLibs: /usr/lib/libpython3.6m.so (found suitable version "3.6.1", minimum required is "3") CMake Warning at /usr/share/cmake/Modules/FindBoost.cmake:1536 (message): No header defined for python3; skipping header check Call Stack (most recent call first): boostpython/CMakeLists.txt:11 (find_package) -- Boost version: 1.63.0 -- Found the following Boost libraries: -- python3 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE ENABLE_GLSL ENABLE_PYTHON INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/avogadrolibs-1.90.0/build + /usr/bin/make -O -j4 /usr/bin/cmake -H/builddir/build/BUILD/avogadrolibs-1.90.0 -B/builddir/build/BUILD/avogadrolibs-1.90.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.90.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.90.0/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend /usr/bin/make -f thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/build.make thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/depend /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake --color= Scanning dependencies of target encodefile make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake --color= Scanning dependencies of target bodrparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/thirdparty/jsoncpp /builddir/build/BUILD/avogadrolibs-1.90.0/build/thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/DependInfo.cmake --color= Scanning dependencies of target jsoncpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/build.make thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroCore make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 0%] Building CXX object utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/encodefile && /usr/bin/c++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -o CMakeFiles/encodefile.dir/encodefile.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/utilities/encodefile/encodefile.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 2%] Linking CXX executable ../../bin/encodefile cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/encodefile && /usr/bin/cmake -E cmake_link_script CMakeFiles/encodefile.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -rdynamic CMakeFiles/encodefile.dir/encodefile.cxx.o -o ../../bin/encodefile make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 2%] Built target encodefile make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroQtGui_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 2%] Automatic MOC for target AvogadroQtGui cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/ Release Generating MOC source AvogadroQtGui_autogen/include/multiviewwidget.moc Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp Generating MOC source AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp Generating MOC compilation AvogadroQtGui_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 2%] Built target AvogadroQtGui_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroQtOpenGL_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 3%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/ Release Generating MOC source AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp Generating MOC compilation AvogadroQtOpenGL_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 3%] Built target AvogadroQtOpenGL_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroMoleQueue_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 2%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:25, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:25, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In static member function 'static bool Avogadro::Core::AvoSpglib::standardizeCell(Avogadro::Core::Molecule&, double, bool, bool)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 3%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/ Release Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp Generating MOC source AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp Generating MOC compilation AvogadroMoleQueue_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 3%] Built target AvogadroMoleQueue_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroQtPlugins_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/ Release Generating MOC source AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp Generating MOC compilation AvogadroQtPlugins_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target AvogadroQtPlugins_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target ThreeDMol_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 2%] Building CXX object thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/jsoncpp.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/thirdparty/jsoncpp && /usr/bin/c++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -o CMakeFiles/jsoncpp.dir/jsoncpp.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp/jsoncpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/map:60:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp/json/json.h:331, from /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp/jsoncpp.cpp:78: /usr/include/c++/7/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = Json::Value::CZString; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/7/bits/stl_tree.h:2470:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In member function 'Json::Value Json::Value::removeMember(const char*)': /usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _M_erase_aux(__position); ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Arg&&, _NodeGen&) [with _Arg = std::pair&; _NodeGen = std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::_Alloc_node; _Key = Json::Value::CZString; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/7/bits/stl_tree.h:2191:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In member function 'Json::Value& Json::Value::operator[](Json::Value::ArrayIndex)': /usr/include/c++/7/bits/stl_tree.h:1026:65: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 return _M_insert_unique_(__pos, std::forward<_Arg>(__x), __an); ^ /usr/include/c++/7/bits/stl_tree.h: In member function 'void Json::Value::resize(Json::Value::ArrayIndex)': /usr/include/c++/7/bits/stl_tree.h:2491:16: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator >' changed in GCC 7.1 _M_erase_aux(__first++); ~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In member function 'Json::Value& Json::Value::resolveReference(const char*, bool)': /usr/include/c++/7/bits/stl_tree.h:1026:65: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 return _M_insert_unique_(__pos, std::forward<_Arg>(__x), __an); ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ Release Generating MOC source ThreeDMol_autogen/include/ThreeDMolPlugin.moc Generating MOC source ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp Generating MOC source ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp Generating MOC compilation ThreeDMol_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target ThreeDMol_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Linking CXX static library libjsoncpp.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/thirdparty/jsoncpp && /usr/bin/cmake -P CMakeFiles/jsoncpp.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/thirdparty/jsoncpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/jsoncpp.dir/link.txt --verbose=1 /usr/bin/ar qc libjsoncpp.a CMakeFiles/jsoncpp.dir/jsoncpp.cpp.o /usr/bin/ranlib libjsoncpp.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target BondCentric_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target jsoncpp make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ Release Generating MOC source BondCentric_autogen/include/BondCentricPlugin.moc Generating MOC source BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp Generating MOC compilation BondCentric_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target BondCentric_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Bonding_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ Release Generating MOC source Bonding_autogen/include/BondingPlugin.moc Generating MOC source Bonding_autogen/EWIEGA46WW/moc_bonding.cpp Generating MOC compilation Bonding_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target Bonding_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target CoordinateEditor_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ Release Generating MOC source CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc Generating MOC source CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp Generating MOC source CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp Generating MOC source CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp Generating MOC compilation CoordinateEditor_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target CoordinateEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target CopyPaste_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ Release Generating MOC source CopyPaste_autogen/include/CopyPastePlugin.moc Generating MOC source CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp Generating MOC compilation CopyPaste_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target CopyPaste_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Crystal_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ Release Generating MOC source Crystal_autogen/include/CrystalPlugin.moc Generating MOC source Crystal_autogen/EWIEGA46WW/moc_crystal.cpp Generating MOC source Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp Generating MOC source Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp Generating MOC source Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp Generating MOC source Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp Generating MOC compilation Crystal_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Built target Crystal_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target CrystalScene_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 5%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ Release Generating MOC source CrystalScene_autogen/include/CrystalScenePlugin.moc Generating MOC source CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp Generating MOC compilation CrystalScene_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 5%] Built target CrystalScene_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target CustomElements_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 5%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ Release Generating MOC source CustomElements_autogen/include/CustomElementsPlugin.moc Generating MOC source CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp Generating MOC compilation CustomElements_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 5%] Built target CustomElements_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Editor_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateblockgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 5%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ Release Generating MOC source Editor_autogen/include/EditorPlugin.moc Generating MOC source Editor_autogen/EWIEGA46WW/moc_editor.cpp Generating MOC source Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp Generating MOC compilation Editor_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 6%] Built target Editor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Hydrogens_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 7%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ Release Generating MOC source Hydrogens_autogen/include/HydrogensPlugin.moc Generating MOC source Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp Generating MOC compilation Hydrogens_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 7%] Built target Hydrogens_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target LineFormatInput_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ Release Generating MOC source LineFormatInput_autogen/include/LineFormatInputPlugin.moc Generating MOC source LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp Generating MOC source LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp Generating MOC compilation LineFormatInput_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Built target LineFormatInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Manipulator_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ Release Generating MOC source Manipulator_autogen/include/ManipulatorPlugin.moc Generating MOC source Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp Generating MOC compilation Manipulator_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Built target Manipulator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target MeasureTool_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 1%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/bodr && /usr/bin/c++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/utilities/bodr/bodrparse.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/utilities.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/utilities/bodr/bodrparse.cxx:19: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Element}; _Tp = Element; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In function 'int main(int, char**)': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Linking CXX executable ../../bin/bodrparse cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/bodr && /usr/bin/cmake -E cmake_link_script CMakeFiles/bodrparse.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -rdynamic CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Built target bodrparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target MolecularProperties_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ Release Generating MOC source MeasureTool_autogen/include/MeasureToolPlugin.moc Generating MOC source MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp Generating MOC compilation MeasureTool_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Built target MeasureTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Navigator_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ Release Generating MOC source MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc Generating MOC source MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp Generating MOC source MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp Generating MOC compilation MolecularProperties_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Built target MolecularProperties_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target NetworkDatabases_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ Release Generating MOC source NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc Generating MOC source NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp Generating MOC compilation NetworkDatabases_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target NetworkDatabases_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target OpenBabel_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 8%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ Release Generating MOC source Navigator_autogen/include/NavigatorPlugin.moc Generating MOC source Navigator_autogen/EWIEGA46WW/moc_navigator.cpp Generating MOC compilation Navigator_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target Navigator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target QuantumOutput_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ Release Generating MOC source OpenBabel_autogen/include/obfileformat.moc Generating MOC source OpenBabel_autogen/include/OpenBabelPlugin.moc Generating MOC source OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp Generating MOC source OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp Generating MOC source OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp Generating MOC compilation OpenBabel_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target OpenBabel_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target PlayerTool_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target QuantumOutput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/ Release Generating MOC source QuantumOutput_autogen/include/QuantumOutputPlugin.moc Generating MOC source QuantumOutput_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp Generating MOC source QuantumOutput_autogen/EWIEGA46WW/moc_quantumoutput.cpp Generating MOC source QuantumOutput_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp Generating MOC source QuantumOutput_autogen/EWIEGA46WW/moc_surfacedialog.cpp Generating MOC compilation QuantumOutput_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target QuantumOutput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target POVRay_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ Release Generating MOC source PlayerTool_autogen/include/PlayerToolPlugin.moc Generating MOC source PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp Generating MOC compilation PlayerTool_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target PlayerTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Selection_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 6%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ Release Generating MOC source POVRay_autogen/include/POVRayPlugin.moc Generating MOC source POVRay_autogen/EWIEGA46WW/moc_povray.cpp Generating MOC compilation POVRay_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target POVRay_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target SpaceGroup_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ Release Generating MOC source SpaceGroup_autogen/include/SpaceGroupPlugin.moc Generating MOC source SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp Generating MOC compilation SpaceGroup_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target SpaceGroup_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Spectra_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ Release Generating MOC source Selection_autogen/include/SelectionPlugin.moc Generating MOC source Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp Generating MOC compilation Selection_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target Selection_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target apbs_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ Release Generating MOC source Spectra_autogen/include/SpectraPlugin.moc Generating MOC source Spectra_autogen/EWIEGA46WW/moc_spectra.cpp Generating MOC source Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp Generating MOC compilation Spectra_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target Spectra_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target MongoChem_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/ Release Generating MOC source MongoChem_autogen/include/MongoChemPlugin.moc Generating MOC source MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp Generating MOC compilation MongoChem_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target MongoChem_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target GamessInput_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ Release Generating MOC source apbs_autogen/include/apbsPlugin.moc Generating MOC source apbs_autogen/EWIEGA46WW/moc_apbs.cpp Generating MOC source apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp Generating MOC source apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp Generating MOC compilation apbs_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target apbs_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target QuantumInput_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ Release Generating MOC source QuantumInput_autogen/include/QuantumInputPlugin.moc Generating MOC source QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp Generating MOC compilation QuantumInput_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Built target QuantumInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target ScriptFileFormats_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ Release Generating MOC source GamessInput_autogen/include/GamessInputPlugin.moc Generating MOC source GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp Generating MOC source GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp Generating MOC source GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp Generating MOC compilation GamessInput_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Built target GamessInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target BallStick_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ Release Generating MOC source ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc Generating MOC source ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp Generating MOC compilation ScriptFileFormats_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Built target ScriptFileFormats_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Licorice_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ Release Generating MOC source BallStick_autogen/include/BallStickPlugin.moc Generating MOC source BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp Generating MOC compilation BallStick_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 4%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In static member function 'static bool Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, const Avogadro::Core::Array >&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In static member function 'static bool Avogadro::Core::CrystalTools::buildSupercell(Avogadro::Core::Molecule&, unsigned int, unsigned int, unsigned int)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In static member function 'static bool Avogadro::Core::CrystalTools::fractionalCoordinates(const Avogadro::Core::Molecule&, Avogadro::Core::Array >&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Built target BallStick_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target VanDerWaals_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ Release Generating MOC source Licorice_autogen/include/LicoricePlugin.moc Generating MOC source Licorice_autogen/EWIEGA46WW/moc_licorice.cpp Generating MOC compilation Licorice_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target Licorice_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Wireframe_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ Release Generating MOC source VanDerWaals_autogen/include/VanDerWaalsPlugin.moc Generating MOC source VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp Generating MOC compilation VanDerWaals_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target VanDerWaals_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target Meshes_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ Release Generating MOC source Wireframe_autogen/include/WireframePlugin.moc Generating MOC source Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp Generating MOC compilation Wireframe_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target Wireframe_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target OverlayAxes_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ Release Generating MOC source Meshes_autogen/include/MeshesPlugin.moc Generating MOC source Meshes_autogen/EWIEGA46WW/moc_meshes.cpp Generating MOC compilation Meshes_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target Meshes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target VanDerWaalsAO_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ Release Generating MOC source OverlayAxes_autogen/include/OverlayAxesPlugin.moc Generating MOC source OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp Generating MOC compilation OverlayAxes_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target OverlayAxes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target QTAIMScenePlugin_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/ Release Generating MOC source VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc Generating MOC source VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp Generating MOC compilation VanDerWaalsAO_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target VanDerWaalsAO_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target QTAIMExtension_autogen make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ Release Generating MOC source QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc Generating MOC source QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp Generating MOC compilation QTAIMScenePlugin_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target QTAIMScenePlugin_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 12%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 12%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylinders_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylinders_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/cylinders_fs.h cylinders_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 12%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylinders_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylinders_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/cylinders_vs.h cylinders_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 12%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestrip_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestrip_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/linestrip_fs.h linestrip_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 13%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestrip_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestrip_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/linestrip_vs.h linestrip_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ Release Generating MOC source QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc Generating MOC source QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp Generating MOC compilation QTAIMExtension_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 13%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/mesh_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/mesh_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/mesh_fs.h mesh_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 13%] Built target QTAIMExtension_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 13%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/mesh_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/mesh_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/mesh_vs.h mesh_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 13%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheres_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/spheres_fs.h spheres_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 14%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheres_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/spheres_vs.h spheres_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 14%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_depth_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 14%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 14%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 15%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_bake_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_bake_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 15%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 15%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_render_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 15%] Encoding /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroRendering make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/graph.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/bufferobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.cpp:19: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'std::vector Avogadro::Core::GaussianSetTools::calculateValues(const Vector3&) const': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.cpp:19: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.cpp:19: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.cpp:19: /usr/include/c++/7/bits/stl_vector.h: In member function 'unsigned int Avogadro::Core::GaussianSet::addGto(unsigned int, double, double)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.cpp:19: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.cpp:19: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::Core::GaussianSet::initCalculation()': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/nameatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.cpp:62:8: warning: 'std::size_t Avogadro::Core::{anonymous}::DistanceMatrix::operator()(std::size_t, std::size_t) const' defined but not used [-Wunused-function] size_t DistanceMatrix::operator()(size_t i, size_t j) const ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/camera.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.cpp: In member function 'std::__cxx11::string Avogadro::Core::Molecule::formula(const string&, int) const': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.cpp:542:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (iter->second > over) ~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.cpp:550:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (iter->second > over) ~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.cpp:560:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (iter->second > over) ~~~~~~~~~~~~~^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slatersettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slatersettools.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slatersettools.cpp:19: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'std::vector Avogadro::Core::SlaterSetTools::calculateValues(const Vector3&) const': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 18%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/symbolatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 18%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroups.cpp:22: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroups.cpp:22: /usr/include/c++/7/bits/stl_vector.h: In static member function 'static Avogadro::Core::Array > Avogadro::Core::SpaceGroups::getTransforms(short unsigned int, const Vector3&)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In static member function 'static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 18%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 19%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/version.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/version.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 18%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variantmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometrynode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/c++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 21%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCore.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -Wl,-soname,libAvogadroCore.so -o ../../lib/libAvogadroCore.so CMakeFiles/AvogadroCore.dir/avospglib.cpp.o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o CMakeFiles/AvogadroCore.dir/cube.cpp.o CMakeFiles/AvogadroCore.dir/elements.cpp.o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o CMakeFiles/AvogadroCore.dir/graph.cpp.o CMakeFiles/AvogadroCore.dir/mesh.cpp.o CMakeFiles/AvogadroCore.dir/molecule.cpp.o CMakeFiles/AvogadroCore.dir/mutex.cpp.o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o CMakeFiles/AvogadroCore.dir/version.cpp.o -Wl,-rpath,:::::::: -lsymspg make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 21%] Built target AvogadroCore make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroIO make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 21%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 21%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrenderer.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 22%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 21%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 21%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 22%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 22%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 21%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp: In member function 'virtual bool Avogadro::Io::CjsonFormat::write(std::ostream&, const Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp:352:32: warning: unused variable 'v' [-Wunused-variable] const std::vector &v = *cube->data(); ^ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'bool Avogadro::Core::Molecule::setAtomPosition2d(Avogadro::Index, const Vector2&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Vector3&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::Io::CjsonFormat::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 22%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 23%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 23%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabel2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 23%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 23%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabel3d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 24%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 24%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 25%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/transformnode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 25%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 24%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 24%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 25%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/volumegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 27%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 27%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformatmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 26%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/c++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In constructor 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::AmbientOcclusionSphereGeometry()': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:784:90: warning: 'new' of type 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::Private' with extended alignment 16 [-Waligned-new=] AmbientOcclusionSphereGeometry::AmbientOcclusionSphereGeometry() : m_dirty(false), d(new Private) ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:784:90: note: uses 'void* operator new(std::size_t)', which does not have an alignment parameter /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:784:90: note: use '-faligned-new' to enable C++17 over-aligned new support /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In copy constructor 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::AmbientOcclusionSphereGeometry(const Avogadro::Rendering::AmbientOcclusionSphereGeometry&)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:794:11: warning: 'new' of type 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::Private' with extended alignment 16 [-Waligned-new=] d(new Private) ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:794:11: note: uses 'void* operator new(std::size_t)', which does not have an alignment parameter /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:794:11: note: use '-faligned-new' to enable C++17 over-aligned new support make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 27%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::Io::GromacsFormat::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 27%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroRendering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -Wl,-soname,libAvogadroRendering.so -o ../../lib/libAvogadroRendering.so CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o CMakeFiles/AvogadroRendering.dir/camera.cpp.o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/node.cpp.o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/scene.cpp.o CMakeFiles/AvogadroRendering.dir/shader.cpp.o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,:::::::: -lGLEW -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 28%] Built target AvogadroRendering make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 27%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::Io::MdlFormat::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 23%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:63:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.cpp:17: /usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator*>; _ForwardIterator = Eigen::Matrix*; bool _TrivialValueTypes = false]': /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:63:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.cpp:17: /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator*>; _ForwardIterator = Eigen::Matrix*; bool _TrivialValueTypes = false]': /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:63:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.cpp:17: /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator*>' changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Vector3&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::Io::CmlFormat::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 28%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::Io::{anonymous}::ResizeArray::resize(const std::vector&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 28%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 28%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/poscarformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DAvogadroIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroIO.dir/poscarformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::Io::PoscarFormat::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 28%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroIO.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -Wl,-soname,libAvogadroIO.so -o ../../lib/libAvogadroIO.so CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o CMakeFiles/AvogadroIO.dir/poscarformat.cpp.o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.90.0/build/lib: ../../lib/libAvogadroCore.so ../../thirdparty/jsoncpp/libjsoncpp.a -lhdf5 -lz -ldl -lm -lsymspg make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 28%] Built target AvogadroIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering 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/builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake --color= Scanning dependencies of target avocjsontocml make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command 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dependencies of target AvogadroQuantumIO make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroQtGui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make 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'/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 30%] Built target avobabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 30%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementdetail_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 30%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.cpp: In member function 'void Avogadro::QuantumIO::GAMESSUSOutput::reorderMOs()': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.cpp:337:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int iMO =0;iMO::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QuantumIO::GAMESSUSOutput::readEigenvectors(std::istream&)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QuantumIO::GAMESSUSOutput::readAtomBlock(std::istream&, Avogadro::Core::Molecule&, bool)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 31%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementitem_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 31%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 31%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementtranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 30%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/customelementdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 31%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 31%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.cpp:18: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.cpp:18: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::QuantumIO::GaussianFchk::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 32%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/generichighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 32%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/fileformatdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 32%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::QuantumIO::GaussianCube::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 32%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 32%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp:19:0: /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/../core/mdlvalence_p.h: In function 'unsigned int Avogadro::Core::atomValence(unsigned char, int, unsigned int)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/../core/mdlvalence_p.h:340:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (numBonds <= 3) ^~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/../core/mdlvalence_p.h:342:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 5; ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp: In static member function 'static void Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const Avogadro::QtGui::RWAtom&, int, std::vector, std::allocator > >&)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp:283:13: warning: unused variable 'explicitBonds' [-Wunused-variable] const int explicitBonds = bonds.size(); ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp: In static member function 'static Avogadro::Vector3 Avogadro::QtGui::HydrogenTools::generateNewBondVector(const Avogadro::QtGui::RWAtom&, std::vector, std::allocator > >&, Avogadro::Core::AtomHybridization)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp:351:12: warning: variable 'noA2' set but not used [-Wunused-but-set-variable] bool noA2 = false; ^~~~ In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In static member function 'static void Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const Avogadro::QtGui::RWAtom&, int, std::vector, std::allocator > >&)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.cpp:17: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 34%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.cpp:18: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.cpp:18: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::QuantumIO::MoldenFile::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 33%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:25, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:23, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:25, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::QtGui::Molecule::removeAtom(Avogadro::Index)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 34%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 34%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 34%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictablescene_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 35%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 35%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 35%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 34%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.cpp:18: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'std::vector Avogadro::QuantumIO::MopacAux::readArrayD(std::istream&, unsigned int)': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:26, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.cpp:18: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::QuantumIO::MopacAux::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 36%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 36%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 36%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 37%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/qrc_qtgui.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 36%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/viewfactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 36%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.cpp: In member function 'virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.cpp:217:16: warning: statement has no effect [-Wunused-value] type == GaussianSet::F; ~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:24, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 37%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/c++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QuantumIO::NWChemLog::readAtoms(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QuantumIO::NWChemLog::readIntensities(std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:27, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QuantumIO::NWChemLog::readFrequencies(const string&, std::istream&, Avogadro::Core::Molecule&)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 35%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void Avogadro::QtGui::{anonymous}::AddAtomCommand::undo()': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function 'bool Avogadro::QtGui::RWMolecule::setAtomPosition3d(Avogadro::Index, const Vector3&, const QString&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void Avogadro::QtGui::{anonymous}::RemoveAtomCommand::undo()': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void Avogadro::QtGui::{anonymous}::AddAtomCommand::redo()': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual void Avogadro::QtGui::{anonymous}::RemoveAtomCommand::redo()': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool Avogadro::QtGui::{anonymous}::SetPosition3dCommand::mergeWith(const QUndoCommand*)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 38%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQuantumIO.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -Wl,-soname,libAvogadroQuantumIO.so -o ../../lib/libAvogadroQuantumIO.so CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.90.0/build/lib: ../../lib/libAvogadroIO.so ../../thirdparty/jsoncpp/libjsoncpp.a ../../lib/libAvogadroCore.so -lsymspg make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 38%] Built target AvogadroQuantumIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend /usr/bin/make -f boostpython/CMakeFiles/avogadro-python.dir/build.make boostpython/CMakeFiles/avogadro-python.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake --color= Scanning dependencies of target qube make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/boostpython /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython/CMakeFiles/avogadro-python.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro-python make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f boostpython/CMakeFiles/avogadro-python.dir/build.make boostpython/CMakeFiles/avogadro-python.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 37%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 39%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtGui.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 38%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command && /usr/bin/c++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -o CMakeFiles/qube.dir/qube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command/qube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command/qube.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command/qube.cpp:159:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0;idata()->size();i++) ~^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 41%] Linking CXX executable ../../bin/qube cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.90.0/build/lib ../../lib/libAvogadroQuantumIO.so ../../lib/libAvogadroIO.so ../../lib/libAvogadroCore.so -lsymspg make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 41%] Built target qube make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 41%] Generating ui_molequeuewidget.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 42%] Generating ui_inputgeneratordialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 42%] Generating ui_inputgeneratorwidget.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratorwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 42%] Generating ui_molequeuedialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake --color= Scanning dependencies of target AvogadroMoleQueue make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/batchjob.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 39%] Building CXX object boostpython/CMakeFiles/avogadro-python.dir/main.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython && /usr/bin/c++ -Davogadro_python_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -isystem /builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/python3.6m -isystem /usr/include/eigen3 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -o CMakeFiles/avogadro-python.dir/main.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/boostpython/main.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 40%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl && /usr/bin/c++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/glwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl && /usr/bin/c++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/qttextrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 39%] Building CXX object boostpython/CMakeFiles/avogadro-python.dir/core.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython && /usr/bin/c++ -Davogadro_python_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -isystem /builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/python3.6m -isystem /usr/include/eigen3 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -o CMakeFiles/avogadro-python.dir/core.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/boostpython/core.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl && /usr/bin/c++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtOpenGL.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -Wl,-soname,libAvogadroQtOpenGL.so -o ../../lib/libAvogadroQtOpenGL.so CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/moc_compilation.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.90.0/build/lib: /usr/lib/libQt5OpenGL.so.5.9.0 ../../lib/libAvogadroRendering.so ../../lib/libAvogadroQtGui.so -lGLEW -lGLU -lGL /usr/lib/libQt5Widgets.so.5.9.0 /usr/lib/libQt5Gui.so.5.9.0 /usr/lib/libQt5Core.so.5.9.0 ../../lib/libAvogadroIO.so ../../lib/libAvogadroCore.so -lsymspg make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Built target AvogadroQtOpenGL make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 44%] Generating ui_3dmoldialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmoldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake --color= Scanning dependencies of target ThreeDMol make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Building CXX object boostpython/CMakeFiles/avogadro-python.dir/io.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython && /usr/bin/c++ -Davogadro_python_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -isystem /builddir/build/BUILD/avogadrolibs-1.90.0 -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -isystem /usr/include/python3.6m -isystem /usr/include/eigen3 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -o CMakeFiles/avogadro-python.dir/io.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/boostpython/io.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Linking CXX shared module ../lib/avogadro2.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-python.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -o ../lib/avogadro2.so CMakeFiles/avogadro-python.dir/main.cpp.o CMakeFiles/avogadro-python.dir/core.cpp.o CMakeFiles/avogadro-python.dir/io.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.90.0/build/lib ../lib/libAvogadroQuantumIO.so -lpython3.6m -lboost_python3 ../lib/libAvogadroIO.so ../lib/libAvogadroCore.so -lsymspg make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Built target avogadro-python make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Generating qrc_bondcentrictool.cpp cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/lib/qt5/bin/rcc --name bondcentrictool --output /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 44%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake --color= Scanning dependencies of target BondCentric make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratorwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 47%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Built target ThreeDMol make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake --color= Scanning dependencies of target Bonding make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroMoleQueue.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -Wl,-soname,libAvogadroMoleQueue.so -o ../../lib/libAvogadroMoleQueue.so CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/moc_compilation.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.90.0/build/lib: ../../lib/libAvogadroQtGui.so /usr/lib/libMoleQueueClient.so /usr/lib/libQt5Widgets.so.5.9.0 /usr/lib/libQt5Gui.so.5.9.0 ../../lib/libAvogadroIO.so ../../lib/libAvogadroCore.so -lsymspg /usr/lib/libQt5Network.so.5.9.0 /usr/lib/libQt5Core.so.5.9.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Built target AvogadroMoleQueue make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Generating ui_coordinateeditordialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake --color= Scanning dependencies of target CoordinateEditor make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp: In member function 'virtual Avogadro::QtGui::ToolPlugin* Avogadro::QtPlugins::BondCentricFactory::createInstance()': /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp:36:59: warning: 'new' of type 'Avogadro::QtPlugins::BondCentricTool' with extended alignment 16 [-Waligned-new=] BondCentricTool *object = new BondCentricTool(parent()); ^ /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp:36:59: note: uses 'void* operator new(std::size_t)', which does not have an alignment parameter /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp:36:59: note: use '-faligned-new' to enable C++17 over-aligned new support make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 48%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding/bonding.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 49%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 49%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Bonding.dir/Bonding_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 50%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/bonding.cpp.o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o CMakeFiles/Bonding.dir/Bonding_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Bonding.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 50%] Built target Bonding make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake --color= Scanning dependencies of target CopyPaste make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 49%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/BondCentric.dir/BondCentric_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 51%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 51%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 52%] Generating ui_volumescalingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 53%] Generating ui_importcrystaldialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/importcrystaldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 53%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/supercelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 53%] Generating ui_unitcelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_link_script CMakeFiles/BondCentric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BondCentric.a CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o CMakeFiles/BondCentric.dir/BondCentric_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BondCentric.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 53%] Built target BondCentric make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake --color= Scanning dependencies of target CrystalScene make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake --color= Scanning dependencies of target Crystal make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 49%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QtPlugins::CoordinateEditorDialog::applyFinish(bool)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 50%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste/copypaste.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Built target CopyPaste make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake --color= Scanning dependencies of target CustomElements make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystal.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements/customelements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystalscene.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 56%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 56%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 56%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 57%] Built target CoordinateEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Generating qrc_editor.cpp cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/lib/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Generating ui_editortoolwidget.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake --color= Scanning dependencies of target Editor make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 57%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CustomElements.dir/CustomElements_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o CMakeFiles/CustomElements.dir/CustomElements_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Built target CustomElements make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake --color= Scanning dependencies of target Hydrogens make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 57%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Built target CrystalScene make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Generating ui_lineformatinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake --color= Scanning dependencies of target LineFormatInput make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/importcrystaldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens/hydrogens.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Crystal.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/supercelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Editor.dir/editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.cpp: In member function 'virtual void Avogadro::QtPlugins::Editor::draw(Avogadro::Rendering::GroupNode&)': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.cpp:240:7: warning: unused variable 'labelWidth' [-Wunused-variable] int labelWidth = -1*distanceLabel.size(); ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Hydrogens.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Built target Hydrogens make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Generating qrc_manipulator.cpp cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/lib/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator/manipulator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake --color= Scanning dependencies of target Manipulator make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/qrc_editor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 61%] Built target LineFormatInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 62%] Generating qrc_measuretool.cpp cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/lib/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool/measuretool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake --color= Scanning dependencies of target MeasureTool make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator/manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 61%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 62%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 60%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 64%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 63%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 62%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Editor.dir/Editor_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 64%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o CMakeFiles/Editor.dir/Editor_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 64%] Built target Editor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Generating ui_molecularpropertiesdialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake --color= Scanning dependencies of target MolecularProperties make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 64%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 62%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool/measuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 64%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Manipulator.dir/Manipulator_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o CMakeFiles/Manipulator.dir/Manipulator_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Manipulator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Built target Manipulator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 66%] Generating qrc_navigator.cpp cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/lib/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator/navigator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake --color= Scanning dependencies of target Navigator make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Crystal.dir/Crystal_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Crystal.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/Crystal.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/Crystal.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Crystal.a CMakeFiles/Crystal.dir/crystal.cpp.o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o CMakeFiles/Crystal.dir/supercelldialog.cpp.o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o CMakeFiles/Crystal.dir/Crystal_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Crystal.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Built target Crystal make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake --color= Scanning dependencies of target NetworkDatabases make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MeasureTool.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_link_script CMakeFiles/MeasureTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MeasureTool.a CMakeFiles/MeasureTool.dir/measuretool.cpp.o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MeasureTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Built target MeasureTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Generating ui_obforcefielddialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake --color= Scanning dependencies of target OpenBabel make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 66%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Navigator.dir/navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator/navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Built target MolecularProperties make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/ui_surfacedialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/DependInfo.cmake --color= Scanning dependencies of target QuantumOutput make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases/networkdatabases.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 69%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 69%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_link_script CMakeFiles/NetworkDatabases.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NetworkDatabases.a CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NetworkDatabases.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 70%] Built target NetworkDatabases make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Generating qrc_playertool.cpp cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/lib/qt5/bin/rcc --name playertool --output /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake --color= Scanning dependencies of target PlayerTool make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 68%] Building CXX object avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/gaussiansetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QuantumOutput.dir/gaussiansetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 70%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Navigator.dir/Navigator_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Navigator.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Navigator.a CMakeFiles/Navigator.dir/navigator.cpp.o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o CMakeFiles/Navigator.dir/Navigator_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Navigator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Built target Navigator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 69%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obforcefielddialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 72%] Building CXX object avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QuantumOutput.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Building CXX object avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/slatersetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QuantumOutput.dir/slatersetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OpenBabel.dir/obprocess.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obprocess.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Building CXX object avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/QuantumOutputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QuantumOutput.dir/QuantumOutputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 74%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PlayerTool.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PlayerTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 74%] Built target PlayerTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Building CXX object avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/QuantumOutput_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QuantumOutput.dir/QuantumOutput_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutput_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 75%] Generating qrc_selectiontool.cpp cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/lib/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool/selectiontool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake --color= Scanning dependencies of target POVRay make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Building CXX object avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/quantumoutput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/QuantumOutput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QuantumOutput.dir/quantumoutput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/quantumoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake --color= Scanning dependencies of target Selection make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QuantumOutput.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/cmake -P CMakeFiles/QuantumOutput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumOutput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QuantumOutput.a CMakeFiles/QuantumOutput.dir/gaussiansetconcurrent.cpp.o CMakeFiles/QuantumOutput.dir/slatersetconcurrent.cpp.o CMakeFiles/QuantumOutput.dir/surfacedialog.cpp.o CMakeFiles/QuantumOutput.dir/quantumoutput.cpp.o CMakeFiles/QuantumOutput.dir/QuantumOutputPlugin.cpp.o CMakeFiles/QuantumOutput.dir/QuantumOutput_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QuantumOutput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Built target QuantumOutput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake --color= Scanning dependencies of target SpaceGroup make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/POVRay.dir/povray.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray/povray.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool/selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QtPlugins::OpenBabel::onHydrogenOperationFinished(const QByteArray&)': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup/spacegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/POVRay.dir/POVRay_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 78%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o CMakeFiles/POVRay.dir/POVRay_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 78%] Built target POVRay make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 79%] Generating ui_vibrationdialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/ui_vibrationdialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake --color= Scanning dependencies of target Spectra make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 78%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp: In member function 'virtual Avogadro::QtGui::ToolPlugin* Avogadro::QtPlugins::SelectionFactory::createInstance()': /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp:36:55: warning: 'new' of type 'Avogadro::QtPlugins::SelectionTool' with extended alignment 16 [-Waligned-new=] SelectionTool *object = new SelectionTool(parent()); ^ /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp:36:55: note: uses 'void* operator new(std::size_t)', which does not have an alignment parameter /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp:36:55: note: use '-faligned-new' to enable C++17 over-aligned new support make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 79%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 80%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SpaceGroup.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SpaceGroup.a CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SpaceGroup.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 80%] Built target SpaceGroup make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 79%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 80%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/qt5/QtOpenGL -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Selection.dir/Selection_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o CMakeFiles/Selection.dir/Selection_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 79%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 80%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function 'virtual QVariant Avogadro::QtPlugins::VibrationModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:77:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] || m_molecule->vibrationFrequencies().size() <= idx.row()) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:84:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (m_molecule->vibrationFrequencies().size() > idx.row()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:89:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (m_molecule->vibrationIntensities().size() > idx.row()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function 'virtual QModelIndex Avogadro::QtPlugins::VibrationModel::index(int, int, const QModelIndex&) const': /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:105:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row >= 0 && m_molecule && row < m_molecule->vibrationFrequencies().size()) ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Spectra.dir/Spectra_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Built target OpenBabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Built target Selection make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Generating ui_apbsoutputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Generating ui_apbsdialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 83%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/lib/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake --color= Scanning dependencies of target MongoChem make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake --color= Scanning dependencies of target GamessInput make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake --color= Scanning dependencies of target apbs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 81%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Spectra.dir/spectra.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/map:60:0, from /usr/include/qt5/QtCore/qmetatype.h:55, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.cpp:17: /usr/include/c++/7/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = Json::Value::CZString; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/7/bits/stl_tree.h:2470:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.cpp:17: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.cpp:17: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QtPlugins::Spectra::setMode(int)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/map:60:0, from /usr/include/qt5/QtCore/qmetatype.h:55, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:20, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.cpp:17: /usr/include/c++/7/bits/stl_tree.h: In member function 'Json::Value Json::Value::removeMember(const char*)': /usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _M_erase_aux(__position); ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Arg&&, _NodeGen&) [with _Arg = std::pair&; _NodeGen = std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::_Alloc_node; _Key = Json::Value::CZString; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/7/bits/stl_tree.h:2191:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In member function 'Json::Value& Json::Value::operator[](Json::Value::ArrayIndex)': /usr/include/c++/7/bits/stl_tree.h:1026:65: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 return _M_insert_unique_(__pos, std::forward<_Arg>(__x), __an); ^ /usr/include/c++/7/bits/stl_tree.h: In member function 'void Json::Value::resize(Json::Value::ArrayIndex)': /usr/include/c++/7/bits/stl_tree.h:2491:16: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator >' changed in GCC 7.1 _M_erase_aux(__first++); ~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In member function 'Json::Value& Json::Value::resolveReference(const char*, bool)': /usr/include/c++/7/bits/stl_tree.h:1026:65: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 return _M_insert_unique_(__pos, std::forward<_Arg>(__x), __an); ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Spectra.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -P CMakeFiles/Spectra.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/Spectra.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Spectra.a CMakeFiles/Spectra.dir/vibrationdialog.cpp.o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o CMakeFiles/Spectra.dir/spectra.cpp.o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o CMakeFiles/Spectra.dir/Spectra_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Spectra.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 84%] Built target Spectra make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake --color= Scanning dependencies of target QuantumInput make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 83%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochem.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MongoChem.dir/mongochem.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem/mongochem.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 84%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/apbs.dir/apbs.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbs.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChem_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/MongoChem.dir/MongoChem_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 83%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MongoChem.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -P CMakeFiles/MongoChem.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_link_script CMakeFiles/MongoChem.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MongoChem.a CMakeFiles/MongoChem.dir/mongochem.cpp.o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o CMakeFiles/MongoChem.dir/MongoChem_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MongoChem.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Built target MongoChem make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake --color= Scanning dependencies of target ScriptFileFormats make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 85%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput/quantuminput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core 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-std=gnu++11 -o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io 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CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io 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make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Built target QuantumInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake --color= Scanning dependencies of target BallStick make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio 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/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsoutputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio 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/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio 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/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptFileFormats.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Built target ScriptFileFormats make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake --color= Scanning dependencies of target Licorice make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/opendxreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:25, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/opendxreader.cpp:19: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:25, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/opendxreader.cpp:19: /usr/include/c++/7/bits/stl_vector.h: In member function 'bool Avogadro::QtPlugins::OpenDxReader::readFile(const QString&)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/GamessInput.dir/GamessInput_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Linking CXX static library ../../../lib/avogadro2/staticplugins/GamessInput.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/GamessInput.a CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o CMakeFiles/GamessInput.dir/gamessinput.cpp.o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o CMakeFiles/GamessInput.dir/GamessInput_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/GamessInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Built target GamessInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake --color= Scanning dependencies of target VanDerWaals make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice/licorice.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick/ballandstick.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs -isystem /usr/include/qt5/QtNetwork -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/apbs.dir/apbs_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Linking CXX static library ../../../lib/avogadro2/staticplugins/apbs.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o CMakeFiles/apbs.dir/apbs_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/apbs.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Built target apbs make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake --color= Scanning dependencies of target Wireframe make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Licorice.dir/Licorice_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 91%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o CMakeFiles/Licorice.dir/Licorice_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 91%] Built target Licorice make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake --color= Scanning dependencies of target Meshes make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 90%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/BallStick.dir/BallStick_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BallStick.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o CMakeFiles/BallStick.dir/BallStick_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BallStick.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Built target BallStick make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake --color= Scanning dependencies of target OverlayAxes make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Built target VanDerWaals make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake --color= Scanning dependencies of target VanDerWaalsAO make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe/wireframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 91%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes/meshes.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 93%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 93%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Wireframe.dir/Wireframe_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 94%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Wireframe.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -P CMakeFiles/Wireframe.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Wireframe.a CMakeFiles/Wireframe.dir/wireframe.cpp.o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o CMakeFiles/Wireframe.dir/Wireframe_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Wireframe.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 94%] Built target Wireframe make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake --color= Scanning dependencies of target QTAIMScenePlugin make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 93%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/Meshes.dir/Meshes_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 94%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o CMakeFiles/Meshes.dir/Meshes_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Built target Meshes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake --color= Scanning dependencies of target QTAIMExtension make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -P CMakeFiles/VanDerWaalsAO.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaalsAO.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Built target VanDerWaalsAO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 94%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 96%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Built target OverlayAxes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMScenePlugin.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMScenePlugin.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Built target QTAIMScenePlugin make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' In file included from /usr/include/c++/7/vector:69:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:18: /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]': /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /usr/include/qt5/QtCore/qmetatype.h:53, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:22, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.h:21, from /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:18: /usr/include/c++/7/bits/stl_vector.h: In member function 'void Avogadro::QtPlugins::QTAIMExtension::triggered()': /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 97%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 98%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 99%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 99%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [100%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/moc_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 99%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 99%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fPIC -std=gnu++11 -o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [100%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMExtension.a cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMExtension.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMExtension.a CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/moc_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMExtension.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [100%] Built target QTAIMExtension make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 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-I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.90.0/build -I/builddir/build/BUILD/avogadrolibs-1.90.0 -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib/qt5/./mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/moc_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/moc_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins && /usr/bin/c++ -DAvogadroQtPlugins_EXPORTS -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB 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-isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtConcurrent -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -std=c++11 -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=gnu++11 -o CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtPlugins.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC 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Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avogadrocore.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avogadrocore.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/basisset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/basisset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/color3f.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/color3f.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateblockgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateblockgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elements.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elements.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/graph.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/graph.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mdlvalence_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mdlvalence_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mesh.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mesh.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mutex.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/mutex.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/nameatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/nameatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slatersettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slatersettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroups.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroups.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/symbolatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/symbolatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variantmap.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variantmap.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformatmanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformatmanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/batchjob.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/batchjob.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratordialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratordialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratorwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratorwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuedialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuedialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuemanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuemanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/matrixserialization.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/matrixserialization.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/moleculedeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/moleculedeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/moleculeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/moleculeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/utils.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/utils.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/customelementdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/customelementdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementdetail_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementdetail_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementitem_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementitem_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementtranslator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementtranslator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/fileformatdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/fileformatdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/generichighlighter.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/generichighlighter.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictablescene_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictablescene_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictableview.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictableview.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentatom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentatom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentbond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentbond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/viewfactory.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/viewfactory.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/glwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/glwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/qttextrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/qttextrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmol.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmol.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmoldialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmoldialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbs.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbs.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsoutputdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsoutputdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/opendxreader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/opendxreader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick/ballandstick.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick/ballandstick.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding/bonding.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding/bonding.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avogadroserver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avogadroserver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotefilesystemservice.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotefilesystemservice.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotemoleculeservice.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotemoleculeservice.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/clientserver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/clientserver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/connectionsettingsdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/connectionsettingsdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste/copypaste.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste/copypaste.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystal.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystal.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystalscene.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystalscene.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/importcrystaldialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/importcrystaldialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/supercelldialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/supercelldialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements/customelements.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements/customelements.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinput.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinput.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens/hydrogens.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens/hydrogens.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice/licorice.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice/licorice.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinput.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinput.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator/manipulator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator/manipulator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool/measuretool.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool/measuretool.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes/meshes.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes/meshes.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularproperties.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularproperties.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem/mongochem.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem/mongochem.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator/navigator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator/navigator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases/networkdatabases.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases/networkdatabases.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obfileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obfileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obforcefielddialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obforcefielddialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obprocess.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obprocess.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes/overlayaxes.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes/overlayaxes.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginmanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginmanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray/povray.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray/povray.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcubature.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcubature.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimengine.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimengine.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimmathutilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimmathutilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput/quantuminput.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput/quantuminput.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/quantumoutput.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/quantumoutput.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool/selectiontool.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool/selectiontool.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup/spacegroup.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup/spacegroup.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals/vanderwaals.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals/vanderwaals.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe/wireframe.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe/wireframe.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/avogadrogl.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/avogadrogl.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/avogadrorendering.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/avogadrorendering.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/bufferobject.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/bufferobject.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/camera.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/camera.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometrynode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometrynode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrenderer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrenderer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabel2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabel2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabel3d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabel3d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/transformnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/transformnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/volumegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/volumegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkglwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkglwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.90.0/docs/mainpage.dox... Parsing file /builddir/build/BUILD/avogadrolibs-1.90.0/docs/mainpage.dox... Bui/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementitem_p.h:37: warning: Compound Avogadro::QtGui::ElementItem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:32: warning: Compound Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:47: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:122: warning: Compound Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:36: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:157: warning: Compound FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkglwidget.h:46: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:32: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:648: warning: Compound Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h:31: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h:38: warning: Compound Avogadro::QtPlugins::QTAIMLSODAIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.h:31: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h:32: warning: Compound Avogadro::QtPlugins::GamessHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:29: warning: Compound Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:63: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:71: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h:31: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.h:29: warning: Compound Avogadro::QtPlugins::QTAIMExtension is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:47: warning: Compound Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.h:33: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:28: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:87: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:641: warning: Compound Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h:34: warning: Compound Avogadro::QtPlugins::EditorToolWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:31: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:58: warning: Compound Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:40: warning: Compound Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:104: warning: Compound Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:35: warning: Compound Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/quantumoutput.h:50: warning: Compound Avogadro::QtPlugins::QuantumOutput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h:35: warning: Compound Avogadro::QtPlugins::QTAIMODEIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictablescene_p.h:38: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:82: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/elementdetail_p.h:37: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:76: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:34: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:39: warning: Compound Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:43: warning: Compound Avogadro::QtPlugins::GamessInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:63: warning: Compound Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:36: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h:31: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:29: warning: Compound Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:50: warning: Compound Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:103: warning: Compound Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:31: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcubature.h:114: warning: Compound Avogadro::QtPlugins::QTAIMCubature is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:33: warning: Compound Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinput.h:39: warning: Compound Avogadro::QtPlugins::GamessInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:95: warning: Compound Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimengine.h:30: warning: Compound Avogadro::QtPlugins::QTAIMEngine is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.h:31: warning: Compound Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:55: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:79: warning: Compound Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.h:29: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:46: warning: Documentation for undefined enum `Different' found. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:72: warning: Documentation for undefined enum `Enumeration' found. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:223: warning: no matching class member found for void setColorRgba(unsigned char[] rgba[]) Possible candidates: void TextProperties::setColorRgba(unsigned char r, unsigned char g, unsigned char b, unsigned char a) void TextProperties::setColorRgba(const unsigned char rgba[4]) void TextProperties::setColorRgba(const Vector4ub &rgba) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:236: warning: no matching class member found for void colorRgba(unsigned char[] rgba[]) const Possible candidates: void TextProperties::colorRgba(unsigned char rgba[4]) const Vector4ub TextProperties::colorRgba() const /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:257: warning: no matching class member found for void setColorRgb(unsigned char[] rgb[]) Possible candidates: void TextProperties::setColorRgb(unsigned char r, unsigned char g, unsigned char b) void TextProperties::setColorRgb(const unsigned char rgb[3]) void TextProperties::setColorRgb(const Vector3ub &rgb) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:269: warning: no matching class member found for void colorRgb(unsigned char[] rgb[]) const Possible candidates: void TextProperties::colorRgb(unsigned char rgb[3]) const Vector3ub TextProperties::colorRgb() const /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avogadroserver.h:42: warning: Member listen(int port) (function) of class AvogadroServer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotefilesystemservice.h:33: warning: Member ls(const Path *input, Listing *output, ::google::protobuf::Closure *done) (function) of class AvoRemoteFileSystemService is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotefilesystemservice.h:36: warning: Member cwd(Path *output, ::google::protobuf::Closure *done) (function) of class AvoRemoteFileSystemService is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotefilesystemservice.h:38: warning: Member separator(Separator *output, ::google::protobuf::Closure *done) (function) of class AvoRemoteFileSystemService is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotefilesystemservice.h:40: warning: Member specialDirectories(Paths *output, ::google::protobuf::Closure *done) (function) of class AvoRemoteFileSystemService is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotefilesystemservice.h:41: warning: Member absolutePath(const Path *input, Path *output, ::google::protobuf::Closure *done) (function) of class AvoRemoteFileSystemService is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotemoleculeservice.h:33: warning: Member open(const OpenRequest *input, OpenResponse *output, ::google::protobuf::Closure *done) (function) of class AvoRemoteMoleculeService is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/avoremotemoleculeservice.h:36: warning: Member fileFormats(FileFormats *formats, ::google::protobuf::Closure *done) (function) of class AvoRemoteMoleculeService is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h:72: warning: Member fileAcceptedInternal(const QString &) (signal) of class FileDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h:43: warning: Member FileDialog(ProtoCall::Runtime::vtkCommunicatorChannel *, QWidget *Parent, const QString &Title=QString(), const QString &Directory=QString(), const QString &Filter=QString()) (function) of class FileDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h:77: warning: Member acceptExistingFiles() (function) of class FileDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h:78: warning: Member acceptDefault() (function) of class FileDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h:80: warning: Member buildFileGroup(const QString &filename) (function) of class FileDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialog.h:82: warning: Member showEvent(QShowEvent *showEvent) (function) of class FileDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:40: warning: Member setFilter(const QString &filter) (slot) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:41: warning: Member setShowHidden(const bool &hidden) (slot) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:42: warning: Member getShowHidden() (slot) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:36: warning: Member FileDialogFilter(FileDialogModel *sourceModel, QObject *Parent=NULL) (function) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:45: warning: Member filterAcceptsRow(int row_source, const QModelIndex &source_parent) const (function) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:47: warning: Member m_model (variable) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:48: warning: Member m_wildcards (variable) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogfilter.h:49: warning: Member m_showHidden (variable) of class FileDialogFilter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:51: warning: Member FileType (enumeration) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:139: warning: Member fileExistsComplete(const QString &path, bool exists) (signal) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:140: warning: Member dirExistsComplete(const QString &path, bool exits) (signal) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:141: warning: Member absoluteFilePathComplete(const QString &path) (signal) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:65: warning: Member FileDialogModel(ProtoCall::Runtime::vtkCommunicatorChannel *server, QObject *Parent=NULL) (function) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:82: warning: Member mkdir(const QString &dirname) (function) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:85: warning: Member rmdir(const QString &dirname) (function) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:88: warning: Member rename(const QString &oldname, const QString &newname) (function) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:135: warning: Member isDirectory(FileDialogModel::FileType type) (function) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:136: warning: Member isFile(FileDialogModel::FileType type) (function) of class FileDialogModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:159: warning: Member IconType (enumeration) of class FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:162: warning: Member icon(IconType t) const (function) of class FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:163: warning: Member icon(FileDialogModel::FileType f) const (function) of class FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:166: warning: Member icon(const QFileInfo &info) const (function) of class FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:167: warning: Member icon(QFileIconProvider::IconType ico) const (function) of class FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:169: warning: Member m_folderLinkIcon (variable) of class FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/filedialogmodel.h:170: warning: Member m_fileLinkIcon (variable) of class FileDialogModelIconProvider is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkAvogadroActor.h:46: warning: Member indent (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkAvogadroActor.h:73: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkAvogadroActor.h:74: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkAvogadroActor.h:76: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h:27: warning: Member Matrix3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h:28: warning: Member Matrix4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h:29: warning: Member MatrixX (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h:31: warning: Member Matrix2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h:32: warning: Member Matrix3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h:33: warning: Member Matrix4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/matrix.h:34: warning: Member MatrixXf (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:27: warning: Member Vector3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:28: warning: Member Vector4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:30: warning: Member Vector2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:31: warning: Member Vector3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:32: warning: Member Vector4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:33: warning: Member Vector2i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:34: warning: Member Vector3i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:35: warning: Member Vector4i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:36: warning: Member Vector2ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:37: warning: Member Vector3ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/vector.h:38: warning: Member Vector4ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avogadrocore.h:64: warning: Member MaxIndex (variable) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:42: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:50: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:106: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:98: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:82: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:66: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:58: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:90: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/types.h:74: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:26: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:414: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:421: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:427: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:434: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:440: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:446: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:452: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avogadrocore.h:89: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:203: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h:7: warning: Member element_count (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h:9: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h:23: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h:49: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h:71: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h:116: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/elementdata.h:157: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:27: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:67: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:145: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:254: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:434: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:613: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:704: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/spacegroupdata.h:773: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:118: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:121: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:143: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:149: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:177: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:182: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:187: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:192: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:197: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:202: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:207: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:213: warning: Member resize(const size_t &sz, ValueType t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:219: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:225: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:230: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:235: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:241: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:247: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:252: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:257: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:263: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:269: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:275: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:280: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:286: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:292: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:298: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:304: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:310: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:316: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:322: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:329: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:335: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:341: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:347: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:352: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:358: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:364: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:372: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:379: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:386: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:393: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:95: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:96: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:78: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:82: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:87: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:92: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:69: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:71: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:563: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:162: warning: Member selected() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:52: warning: Member MoleculeType (typedef) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:46: warning: explicit link request to 'AtomType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:52: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:162: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h:36: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h:38: warning: Member AtomTyper(const Molecule *mol=NULL) (function) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/avospglib.h:44: warning: The following parameters of Avogadro::Core::AvoSpglib::getHallNumber(const Molecule &mol, double cartTol=1e-5) are not documented: parameter 'mol' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/basisset.h:89: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:570: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:37: warning: Member MoleculeType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:38: warning: Member AtomType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:31: warning: explicit link request to 'BondType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:37: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:38: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/color3f.h:94: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateblockgenerator.h:51: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateblockgenerator.h:52: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateblockgenerator.h:93: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:119: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:120: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:121: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:122: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:127: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:128: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:95: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:96: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/coordinateset.h:125: warning: Found unknown command `\index' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:48: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:69: warning: The following parameters of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) are not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:79: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:95: warning: The following parameters of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) are not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:113: warning: The following parameters of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) are not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/crystaltools.h:125: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:48: warning: Member Type (enumeration) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:131: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:216: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:217: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:219: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:220: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:228: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:229: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:229: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:229: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:230: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:231: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:231: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:232: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:233: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:234: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/cube.h:204: warning: The following parameters of Avogadro::Core::Cube::setValue(unsigned int i, double value) are not documented: parameter 'value' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:180: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:181: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:182: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:183: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:184: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:185: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:186: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:188: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:196: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:204: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:212: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:220: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:228: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:236: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:244: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:252: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:253: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/basisset.h:89: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:150: warning: argument 'The' of command @param is not found in the argument list of GaussianSet::outputAll(ElectronType type=Paired) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussianset.h:153: warning: The following parameters of Avogadro::Core::GaussianSet::outputAll(ElectronType type=Paired) are not documented: parameter 'type' lding group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AvogadroServer... Generating docs for compound AvoRemoteFileSystemService... Generating docs for compound AvoRemoteMoleculeService... Generating docs for compound FileDialog... Generating docs for compound FileDialogFilter... Generating docs for compound FileDialogModel... Generating docs for compound FileDialogModelIconProvider... Generating docs for compound vtkAvogadroActor... Generating namespace index... Generating docs for namespace Avogadro Generating docs for compound Avogadro::TypeTraits... Generating docs for compound Avogadro::TypeTraits< char >... Generating docs for compound Avogadro::TypeTraits< double >... Generating docs for compound Avogadro::TypeTraits< float >... Generating docs for compound Avogadro::TypeTraits< int >... Generating docs for compound Avogadro::TypeTraits< short >... Generating docs for compound Avogadro::TypeTraits< unsigned char >... Generating docs for compound Avogadro::TypeTraits< unsigned int >... Generating docs for compound Avogadro::TypeTraits< unsigned short >... Generating docs for namespace Avogadro::Core Generating docs for compound Avogadro::Core::Array... Generating docs for compound Avogadro::Core::ArraySet... Generating docs for nested compound Avogadro::Core::ArraySet::Holder... Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder... Generating docs for compound Avogadro::Core::Atom... Generating docs for compound Avogadro::Core::AtomTemplate... Generating docs for compound Avogadro::Core::AtomTyper... Generating docs for compound Avogadro::Core::AvoSpglib... Generating docs for compound Avogadro::Core::BasisSet... Generating docs for compound Avogadro::Core::Bond... Generating docs for compound Avogadro::Core::BondTemplate... Generating docs for compound Avogadro::Core::Color3f... Generating docs for compound Avogadro::Core::CoordinateBlockGenerator... Generating docs for compound Avogadro::Core::CoordinateSet... Generating docs for compound Avogadro::Core::CrystalTools... Generating docs for compound Avogadro::Core::Cube... Generating docs for compound Avogadro::Core::Elements... Generating docs for compound Avogadro::Core::GaussianSet... Generating docs for compound Avogadro::Core::Gau/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/gaussiansettools.h:45: warning: Member GaussianSetTools(Molecule *mol=0) (function) of class Avogadro::Core::GaussianSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:447: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:448: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:450: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:452: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:460: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:461: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:463: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:465: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:472: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:498: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:509: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:510: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:511: warning: Member vibrationIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:512: warning: Member setVibrationIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:513: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:514: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:521: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:522: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:523: warning: Member coordinate3d() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:524: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:527: warning: Member m_graph (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:528: warning: Member m_graphDirty (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:529: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:530: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:531: warning: Member m_atomicNumbers (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:532: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:533: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:534: warning: Member m_coordinates3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:535: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:536: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:539: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:540: warning: Member m_vibrationIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:541: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:543: warning: Member m_bondPairs (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:544: warning: Member m_bondOrders (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:547: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:549: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:550: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:552: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:553: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:143: warning: argument 'charge' of command @param is not found in the argument list of Molecule::setHybridization(Index atomId, AtomHybridization hybridization) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:148: warning: The following parameters of Avogadro::Core::Molecule::setHybridization(Index atomId, AtomHybridization hybridization) are not documented: parameter 'hybridization' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/moleculedeserializer.h:39: warning: argument 'The' of command @param is not found in the argument list of MoleculeDeserializer::MoleculeDeserializer(Molecule *molecule) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/protocall/moleculedeserializer.h:41: warning: The following parameters of Avogadro::Core::MoleculeDeserializer::MoleculeDeserializer(Molecule *molecule) are not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/nameatomtyper.h:37: warning: Member NameAtomTyper(const Molecule *mol=NULL) (function) of class Avogadro::Core::NameAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h:38: warning: Member AtomTyper(const Molecule *mol=NULL) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h:36: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.h:34: warning: Member RingPerceiver(const Molecule *m=0) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.h:38: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.h:39: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/ringperceiver.h:42: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/basisset.h:89: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:106: warning: argument 'MOs' of command @param is not found in the argument list of SlaterSet::addEigenVectors(const Eigen::MatrixXd &e) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slaterset.h:109: warning: The following parameters of Avogadro::Core::SlaterSet::addEigenVectors(const Eigen::MatrixXd &e) are not documented: parameter 'e' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/slatersettools.h:44: warning: Member SlaterSetTools(Molecule *mol=0) (function) of class Avogadro::Core::SlaterSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/symbolatomtyper.h:37: warning: Member SymbolAtomTyper(const Molecule *mol=NULL) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h:38: warning: Member AtomTyper(const Molecule *mol=NULL) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atomtyper.h:36: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:36: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:37: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:38: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:39: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:41: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:98: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/unitcell.h:42: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (friend) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant.h:40: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant.h:132: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:76: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:87: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:98: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:109: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:120: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:131: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:142: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:153: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:164: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:170: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:181: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:198: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:209: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:220: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:231: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:248: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:261: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:276: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:291: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:300: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:318: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variant-inline.h:327: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variantmap.h:40: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/variantmap.h:41: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:36: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:37: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:40: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:41: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:42: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:43: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:44: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:45: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:46: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:47: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:48: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:49: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:50: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:51: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:57: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:62: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:68: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:74: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:81: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:88: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:94: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/array.h:96: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:59: warning: argument 'fileName' of command @param is not found in the argument list of CjsonFormat::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cjsonformat.h:59: warning: The following parameters of Avogadro::Io::CjsonFormat::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:59: warning: argument 'fileName' of command @param is not found in the argument list of CmlFormat::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/cmlformat.h:59: warning: The following parameters of Avogadro::Io::CmlFormat::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:128: warning: argument 'fileName' of command @param is not found in the argument list of FileFormat::write(std::ostream &out, const Core::Molecule &molecule)=0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:133: warning: The following parameters of Avogadro::Io::FileFormat::write(std::ostream &out, const Core::Molecule &molecule)=0 are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.h:60: warning: argument 'fileName' of command @param is not found in the argument list of GromacsFormat::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/gromacsformat.h:60: warning: The following parameters of Avogadro::Io::GromacsFormat::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command `\data' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.h:255: warning: Found unknown command `\data' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/hdf5dataformat.h:268: warning: Found unknown command `\data' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.h:61: warning: argument 'fileName' of command @param is not found in the argument list of MdlFormat::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/mdlformat.h:61: warning: The following parameters of Avogadro::Io::MdlFormat::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.h:59: warning: argument 'fileName' of command @param is not found in the argument list of PoscarFormat::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/poscarformat.h:59: warning: The following parameters of Avogadro::Io::PoscarFormat::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.h:59: warning: argument 'fileName' of command @param is not found in the argument list of XyzFormat::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/xyzformat.h:59: warning: The following parameters of Avogadro::Io::XyzFormat::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/batchjob.h:92: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=NULL) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/batchjob.h:72: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/batchjob.h:78: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/batchjob.h:85: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgenerator.h:461: warning: Member InputGenerator(QObject *parent_=NULL) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgenerator.h:459: warning: The following parameters of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=NULL) are not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratordialog.h:48: warning: Member InputGeneratorDialog(QWidget *parent_=0) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/inputgeneratordialog.h:49: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=0) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuedialog.h:164: warning: Member done(int r) (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuedialog.h:47: warning: Member MoleQueueDialog(QWidget *parent_=0) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuemanager.h:46: warning: Member MoleQueueManager(QObject *parent_=0) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h:95: warning: Member data(const QModelIndex &idx, int role) const (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h:96: warning: Member flags(const QModelIndex &idx=QModelIndex()) const (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h:97: warning: Member headerData(int section, Qt::Orientation orientation, int role) const (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h:98: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h:100: warning: Member parent(const QModelIndex &child) const (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h:101: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuequeuelistmodel.h:102: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuewidget.h:43: warning: Member MoleQueueWidget(QWidget *parent_=0) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue/molequeuewidget.h:139: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:51: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:52: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:53: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:41: warning: Member ContainerWidget(QWidget *parent=0, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:44: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:45: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:47: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/containerwidget.h:48: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/customelementdialog.h:42: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=0) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:36: warning: Member createInstance()=0 (function) of class PluginFactory< ExtensionPlugin > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:37: warning: Member identifier() const=0 (function) of class PluginFactory< ExtensionPlugin > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:38: warning: Member description() const=0 (function) of class PluginFactory< ExtensionPlugin > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:58: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:55: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member FileBrowseWidget(QWidget *theParent=0) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:44: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:46: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:48: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:49: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:51: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/filebrowsewidget.h:52: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/generichighlighter.h:102: warning: Member highlightBlock(const QString &text) (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/generichighlighter.h:95: warning: Member swap(GenericHighlighter &first, GenericHighlighter &second) (friend) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/hydrogentools.h:95: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:142: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:156: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:157: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:158: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:159: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:167: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:168: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:169: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:170: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:171: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:172: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:173: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:174: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:175: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:70: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, bool reverse=false, QObject *parent=0) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:85: warning: The following parameters of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, bool reverse=false) are not documented: parameter 'reverse' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/meshgenerator.h:140: warning: The following parameters of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) are not documented: parameter 'val2' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:73: warning: Member MoleculeChange (enumeration) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:58: warning: Member Molecule(QObject *parent_=0) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:135: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:216: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:218: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:219: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/molecule.h:221: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:447: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:448: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:450: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:452: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:460: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:461: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:463: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:465: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:472: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:498: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:509: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:510: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:511: warning: Member vibrationIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:512: warning: Member setVibrationIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:513: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:514: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:521: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:522: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:523: warning: Member coordinate3d() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:524: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:527: warning: Member m_graph (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:528: warning: Member m_graphDirty (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:529: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:530: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:531: warning: Member m_atomicNumbers (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:532: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:533: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:534: warning: Member m_coordinates3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:535: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:536: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:539: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:540: warning: Member m_vibrationIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:541: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:543: warning: Member m_bondPairs (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:544: warning: Member m_bondOrders (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:547: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:549: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:550: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:552: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/molecule.h:553: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:76: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:77: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:78: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:79: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:73: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:51: warning: Member MoleculeModel(QObject *p=0) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:53: warning: Member parent(const QModelIndex &child) const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:54: warning: Member rowCount(const QModelIndex &parent) const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:55: warning: Member columnCount(const QModelIndex &parent) const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:57: warning: Member flags(const QModelIndex &index) const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:59: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:60: warning: Member data(const QModelIndex &index, int role) const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:62: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:65: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:67: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:68: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:70: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:34: warning: Member m_molecule (variable) of class Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:35: warning: Member m_modelView (variable) of class Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:36: warning: Member m_dirty (variable) of class Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/moleculemodel.h:37: warning: Member m_active (variable) of class Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:63: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:64: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:65: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:66: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:60: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:44: warning: Member MultiViewWidget(QWidget *parent=0, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:47: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:56: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/multiviewwidget.h:57: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictableview.h:57: warning: argument 'element' of command @param is not found in the argument list of PeriodicTableView::setElement(int element_) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/periodictableview.h:59: warning: The following parameters of Avogadro::QtGui::PeriodicTableView::setElement(int element_) are not documented: parameter 'element_' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentatom.h:35: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentatom.h:36: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentbond.h:35: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/persistentbond.h:36: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h:110: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h:111: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h:112: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h:113: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h:47: warning: The following parameters of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=NULL) are not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h:43: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=NULL) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/pythonscript.h:49: warning: The following parameters of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=NULL) are not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:644: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:162: warning: Member selected() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/atom.h:52: warning: Member MoleculeType (typedef) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:651: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:37: warning: Member MoleculeType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core/bond.h:38: warning: Member AtomType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:86: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:245: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:246: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:247: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:625: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:626: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:633: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/rwmolecule.h:635: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:36: warning: Member createInstance()=0 (function) of class PluginFactory< ScenePlugin > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:37: warning: Member identifier() const=0 (function) of class PluginFactory< ScenePlugin > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:38: warning: Member description() const=0 (function) of class PluginFactory< ScenePlugin > is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:64: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:65: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:66: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:60: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:61: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member ScenePluginModel(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member parent(const QModelIndex &child) const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:43: warning: Member rowCount(const QModelIndex &parent) const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:44: warning: Member columnCount(const QModelIndex &parent) const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:46: warning: Member flags(const QModelIndex &index) const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:49: warning: Member data(const QModelIndex &index, int role) const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:54: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:122: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:151: warning: Member createInstance()=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:152: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. ssianSetTools... Generating docs for compound Avogadro::Core::Graph... Generating docs for compound Avogadro::Core::Mesh... Generating docs for compound Avogadro::Core::Molecule... Generating docs for compound Avogadro::Core::MoleculeDeserializer... Generating docs for compound Avogadro::Core::MoleculeSerializer... Generating docs for compound Avogadro::Core::Mutex... Generating docs for compound Avogadro::Core::NameAtomTyper... Generating docs for compound Avogadro::Core::RingPerceiver... Generating docs for compound Avogadro::Core::SlaterSet... Generating docs for compound Avogadro::Core::SlaterSetTools... Generating docs for compound Avogadro::Core::SpaceGroups... Generating docs for compound Avogadro::Core::SymbolAtomTyper... Generating docs for compound Avogadro::Core::UnitCell... Generating docs for compound Avogadro::Core::Variant... Generating docs for compound Avogadro::Core::VariantMap... Generating docs for compound Avogadro::Core::internal::ArrayRefContainer... Generating docs for compound Avogadro::Io::CjsonFormat... Generating docs for compound Avogadro::Io::CmlFormat... Generating docs for compound Avogadro::Io::FileFormat... Generating docs for compound Avogadro::Io::FileFormatManager... Generating docs for compound Avogadro::Io::GromacsFormat... Generating docs for compound Avogadro::Io::Hdf5DataFormat... Generating docs for compound Avogadro::Io::MdlFormat... Generating docs for compound Avogadro::Io::PoscarFormat... Generating docs for compound Avogadro::Io::XyzFormat... Generating docs for compound Avogadro::MoleQueue::BatchJob... Generating docs for compound Avogadro::MoleQueue::InputGenerator... Generating docs for compound Avogadro::MoleQueue::InputGeneratorDialog... Generating docs for compound Avogadro::MoleQueue::InputGeneratorWidget... Generating docs for compound Avogadro::MoleQueue::MoleQueueDialog... Generating docs for compound Avogadro::MoleQueue::MoleQueueManager... Generating docs for compound Avogadro::MoleQueue::MoleQueueQueueListModel... Generating docs for compound Avogadro::MoleQueue::MoleQueueWidget... Generating docs for compound Avogadro::QtGui::ContainerWidget... Generating docs for compound Avogadro::QtGui::CustomElementDialog... Generating docs for compound Avogadro::QtGui::ElementDetail... Generating docs for compound Avogadro::QtGui::ElementItem... Generating docs for compound Avogadro::QtGui::ElementTranslator... Generating docs for compound Avogadro::QtGui::ExtensionPlugin... Generating docs for compound Avogadro::QtGui::ExtensionPluginFactory... Generating docs for compound Avogadro::QtGui::FileBrowseWidget... Generating docs for compound Avogadro::QtGui::FileFormatDialog... Generating docs for compound Avogadro::QtGui::GenericHighlighter... Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule... Generating docs for compound Avogadro::QtGui::HydrogenTools... Generating docs for compound Avogadro::QtGui::MeshGenerator... Generating docs for compound Avogadro::QtGui::Molecule... Generating docs for compound Avogadro::QtGui::MoleculeModel... Generating docs for compound Avogadro::QtGui::MoleculeSystem... Generating docs for compound Avogadro::QtGui::MultiViewWidget... Generating docs for compound Avogadro::QtGui::PeriodicTableScene... Generating docs for compound Avogadro::QtGui::PeriodicTableView... Generating docs for compound Avogadro::QtGui::PersistentAtom... Generating docs for compound Avogadro::QtGui::PersistentBond... Generating docs for compound Avogadro::QtGui::PythonScript... Generating docs for compound Avogadro::QtGui::RWAtom... Generating docs for compound Avogadro::QtGui::RWBond... Generating docs for compound Avogadro::QtGui::RWMolecule... Generating docs for compound Avogadro::QtGui::ScenePlugin... Generating docs for compound Avogadro::QtGui::ScenePluginFactory... Generating docs for compound Avogadro::QtGui::ScenePluginModel... Generating docs for compound Avogadro::QtGui::ToolPlugin... Generating docs for compound Avogadro::QtGui::ToolPluginFactory... Generating docs for compound Avogadro::QtGui::ViewFactory... Generating docs for/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/glwidget.h:116: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl/glwidget.h:60: warning: Member GLWidget(QWidget *parent=0) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbs.h:39: warning: Member Apbs(QObject *parent_=0) (function) of class Avogadro::QtPlugins::Apbs is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/apbsdialog.h:56: warning: Member setMolecule(QtGui::Molecule *molecule) (function) of class Avogadro::QtPlugins::ApbsDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick/ballandstick.h:34: warning: Member BallAndStick(QObject *parent=0) (function) of class Avogadro::QtPlugins::BallAndStick is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick/ballandstick.h:40: warning: Member processEditable(const QtGui::RWMolecule &molecule, Rendering::GroupNode &node) AVO_OVERRIDE (function) of class Avogadro::QtPlugins::BallAndStick is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick/ballandstick.h:54: warning: Member setupWidget() AVO_OVERRIDE (function) of class Avogadro::QtPlugins::BallAndStick is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h:62: warning: Member BondCentricTool(QObject *parent_=NULL) (function) of class Avogadro::QtPlugins::BondCentricTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h:72: warning: Member setEditMolecule(QtGui::RWMolecule *) AVO_OVERRIDE (function) of class Avogadro::QtPlugins::BondCentricTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding/bonding.h:48: warning: Member setMolecule(QtGui::Molecule *mol) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::Bonding is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding/bonding.h:33: warning: Member Bonding(QObject *parent_=0) (function) of class Avogadro::QtPlugins::Bonding is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/clientserver.h:62: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::ClientServer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/clientserver.h:63: warning: Member readMolecule(QtGui::Molecule &mol) (slot) of class Avogadro::QtPlugins::ClientServer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/clientserver.h:66: warning: Member connectionError() (signal) of class Avogadro::QtPlugins::ClientServer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/clientserver.h:53: warning: Member ClientServer(QObject *parent_=0) (function) of class Avogadro::QtPlugins::ClientServer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/connectionsettingsdialog.h:46: warning: Member settingsChanged() (signal) of class Avogadro::QtPlugins::ConnectionSettingsDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/connectionsettingsdialog.h:39: warning: Member ConnectionSettingsDialog(QWidget *parent_=0) (function) of class Avogadro::QtPlugins::ConnectionSettingsDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/connectionsettingsdialog.h:42: warning: Member defaultHost (variable) of class Avogadro::QtPlugins::ConnectionSettingsDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/clientserver/connectionsettingsdialog.h:43: warning: Member defaultPort (variable) of class Avogadro::QtPlugins::ConnectionSettingsDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h:51: warning: Member setMolecule(QtGui::Molecule *mol) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::CoordinateEditor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h:36: warning: Member CoordinateEditor(QObject *parent_=0) (function) of class Avogadro::QtPlugins::CoordinateEditor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:47: warning: Member validationFinished(bool valid) (signal) of class Avogadro::QtPlugins::CoordinateEditorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:41: warning: Member CoordinateEditorDialog(QWidget *parent_=0) (function) of class Avogadro::QtPlugins::CoordinateEditorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:44: warning: Member setMolecule(QtGui::Molecule *mol) (function) of class Avogadro::QtPlugins::CoordinateEditorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:42: warning: Member resetMarks() (slot) of class Avogadro::QtPlugins::CoordinateTextEdit is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:43: warning: Member markInvalid(QTextCursor &cur, const QString &tooltip) (slot) of class Avogadro::QtPlugins::CoordinateTextEdit is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:44: warning: Member markValid(QTextCursor &cur, const QString &tooltip) (slot) of class Avogadro::QtPlugins::CoordinateTextEdit is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:37: warning: Member CoordinateTextEdit(QWidget *p=0) (function) of class Avogadro::QtPlugins::CoordinateTextEdit is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:39: warning: Member hasInvalidMarks() const (function) of class Avogadro::QtPlugins::CoordinateTextEdit is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:47: warning: Member event(QEvent *e) (function) of class Avogadro::QtPlugins::CoordinateTextEdit is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste/copypaste.h:54: warning: Member setMolecule(QtGui::Molecule *mol) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::CopyPaste is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste/copypaste.h:39: warning: Member CopyPaste(QObject *parent_=0) (function) of class Avogadro::QtPlugins::CopyPaste is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystal.h:42: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::Crystal is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystal.h:44: warning: Member moleculeChanged(unsigned int changes) (slot) of class Avogadro::QtPlugins::Crystal is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystal.h:33: warning: Member Crystal(QObject *parent_=0) (function) of class Avogadro::QtPlugins::Crystal is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/crystalscene.h:33: warning: Member CrystalScene(QObject *parent=0) (function) of class Avogadro::QtPlugins::CrystalScene is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements/customelements.h:41: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::CustomElements is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements/customelements.h:32: warning: Member CustomElements(QObject *parent_=0) (function) of class Avogadro::QtPlugins::CustomElements is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.h:42: warning: Member Editor(QObject *parent_=NULL) (function) of class Avogadro::QtPlugins::Editor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editor.h:57: warning: Member setEditMolecule(QtGui::RWMolecule *mol) AVO_OVERRIDE (function) of class Avogadro::QtPlugins::Editor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h:38: warning: Member EditorToolWidget(QWidget *parent_=0) (function) of class Avogadro::QtPlugins::EditorToolWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h:41: warning: Member setAtomicNumber(unsigned char atomicNum) (function) of class Avogadro::QtPlugins::EditorToolWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h:42: warning: Member atomicNumber() const (function) of class Avogadro::QtPlugins::EditorToolWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h:44: warning: Member setBondOrder(unsigned char order) (function) of class Avogadro::QtPlugins::EditorToolWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h:45: warning: Member bondOrder() const (function) of class Avogadro::QtPlugins::EditorToolWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor/editortoolwidget.h:47: warning: Member adjustHydrogens() const (function) of class Avogadro::QtPlugins::EditorToolWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h:127: warning: Member FileFormatScript(const QString &scriptFileName) (function) of class Avogadro::QtPlugins::FileFormatScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h:130: warning: Member scriptFilePath() const (function) of class Avogadro::QtPlugins::FileFormatScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h:132: warning: Member inputFormat() const (function) of class Avogadro::QtPlugins::FileFormatScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h:134: warning: Member outputFormat() const (function) of class Avogadro::QtPlugins::FileFormatScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h:136: warning: Member isValid() const (function) of class Avogadro::QtPlugins::FileFormatScript is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h:142: warning: argument 'fileName' of command @param is not found in the argument list of FileFormatScript::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/fileformatscript.h:142: warning: The following parameters of Avogadro::QtPlugins::FileFormatScript::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h:36: warning: Member GamessHighlighter(QTextDocument *parent_=0) (function) of class Avogadro::QtPlugins::GamessHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h:39: warning: Member highlightBlock(const QString &text) (function) of class Avogadro::QtPlugins::GamessHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinput.h:62: warning: Member readMolecule(QtGui::Molecule &mol) (slot) of class Avogadro::QtPlugins::GamessInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinput.h:43: warning: Member GamessInput(QObject *parent=0) (function) of class Avogadro::QtPlugins::GamessInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:47: warning: Member GamessInputDialog(QWidget *parent_=0, Qt::WindowFlags f=0) (function) of class Avogadro::QtPlugins::GamessInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:50: warning: Member setMolecule(QtGui::Molecule *mol) (function) of class Avogadro::QtPlugins::GamessInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:59: warning: Member showEvent(QShowEvent *e) (function) of class Avogadro::QtPlugins::GamessInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h:48: warning: Member GaussianSetConcurrent(QObject *p=0) (function) of class Avogadro::QtPlugins::GaussianSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h:51: warning: Member setMolecule(Core::Molecule *mol) (function) of class Avogadro::QtPlugins::GaussianSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h:53: warning: Member calculateMolecularOrbital(Core::Cube *cube, unsigned int state) (function) of class Avogadro::QtPlugins::GaussianSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h:54: warning: Member calculateElectronDensity(Core::Cube *cube) (function) of class Avogadro::QtPlugins::GaussianSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h:55: warning: Member calculateSpinDensity(Core::Cube *cube) (function) of class Avogadro::QtPlugins::GaussianSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/gaussiansetconcurrent.h:57: warning: Member watcher() (function) of class Avogadro::QtPlugins::GaussianSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens/hydrogens.h:41: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::Hydrogens is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens/hydrogens.h:32: warning: Member Hydrogens(QObject *parent_=0) (function) of class Avogadro::QtPlugins::Hydrogens is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/importcrystaldialog.h:45: warning: Member ImportCrystalDialog(QWidget *p=0) (function) of class Avogadro::QtPlugins::ImportCrystalDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/importcrystaldialog.h:49: warning: Member importCrystalClipboard(Avogadro::Core::Molecule &mol) (function) of class Avogadro::QtPlugins::ImportCrystalDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/importcrystaldialog.h:51: warning: Member displayInvalidFormatMessage() (function) of class Avogadro::QtPlugins::ImportCrystalDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice/licorice.h:34: warning: Member Licorice(QObject *parent=0) (function) of class Avogadro::QtPlugins::Licorice is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:48: warning: Member readMolecule(QtGui::Molecule &mol) (slot) of class Avogadro::QtPlugins::LineFormatInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:49: warning: Member setMolecule(QtGui::Molecule *) (slot) of class Avogadro::QtPlugins::LineFormatInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:39: warning: Member LineFormatInput(QObject *parent_=0) (function) of class Avogadro::QtPlugins::LineFormatInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h:37: warning: Member LineFormatInputDialog(QWidget *parent=0) (function) of class Avogadro::QtPlugins::LineFormatInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h:40: warning: Member setFormats(const QStringList &indents) (function) of class Avogadro::QtPlugins::LineFormatInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h:41: warning: Member format() const (function) of class Avogadro::QtPlugins::LineFormatInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h:42: warning: Member descriptor() const (function) of class Avogadro::QtPlugins::LineFormatInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h:45: warning: Member accept() (slot) of class Avogadro::QtPlugins::LineFormatInputDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator/manipulator.h:40: warning: Member Manipulator(QObject *parent_=NULL) (function) of class Avogadro::QtPlugins::Manipulator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator/manipulator.h:55: warning: Member setEditMolecule(QtGui::RWMolecule *mol) AVO_OVERRIDE (function) of class Avogadro::QtPlugins::Manipulator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool/measuretool.h:45: warning: Member MeasureTool(QObject *parent_=NULL) (function) of class Avogadro::QtPlugins::MeasureTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool/measuretool.h:55: warning: Member setEditMolecule(QtGui::RWMolecule *) AVO_OVERRIDE (function) of class Avogadro::QtPlugins::MeasureTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes/meshes.h:34: warning: Member Meshes(QObject *parent=0) (function) of class Avogadro::QtPlugins::Meshes is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularproperties.h:48: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::MolecularProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularproperties.h:39: warning: Member MolecularProperties(QObject *parent_=0) (function) of class Avogadro::QtPlugins::MolecularProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h:53: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::MolecularPropertiesDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h:47: warning: Member MolecularPropertiesDialog(QtGui::Molecule *mol, QWidget *parent_=0) (function) of class Avogadro::QtPlugins::MolecularPropertiesDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h:50: warning: Member molecule() (function) of class Avogadro::QtPlugins::MolecularPropertiesDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem/mongochem.h:46: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::MongoChem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem/mongochem.h:37: warning: Member MongoChem(QObject *parent_=0) (function) of class Avogadro::QtPlugins::MongoChem is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator/navigator.h:39: warning: Member Navigator(QObject *parent_=NULL) (function) of class Avogadro::QtPlugins::Navigator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:122: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases/networkdatabases.h:59: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::NetworkDatabases is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases/networkdatabases.h:60: warning: Member readMolecule(QtGui::Molecule &mol) (slot) of class Avogadro::QtPlugins::NetworkDatabases is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases/networkdatabases.h:44: warning: Member NetworkDatabases(QObject *parent=0) (function) of class Avogadro::QtPlugins::NetworkDatabases is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obfileformat.h:32: warning: Member OBFileFormat(const std::string &name_, const std::string &identifier_, const std::string &description_, const std::string &specificationUrl_, const std::vector< std::string > fileExtensions_, const std::vector< std::string > mimeTypes_, bool fileOnly_=false) (function) of class Avogadro::QtPlugins::OBFileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obfileformat.h:81: warning: Member fileOnly() const (function) of class Avogadro::QtPlugins::OBFileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obfileformat.h:47: warning: argument 'fileName' of command @param is not found in the argument list of OBFileFormat::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obfileformat.h:47: warning: The following parameters of Avogadro::QtPlugins::OBFileFormat::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/obprocess.h:40: warning: Member OBProcess(QObject *parent_=0) (function) of class Avogadro::QtPlugins::OBProcess is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h:63: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::OpenBabel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h:65: warning: Member readMolecule(QtGui::Molecule &mol) (slot) of class Avogadro::QtPlugins::OpenBabel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h:44: warning: Member OpenBabel(QObject *parent=0) (function) of class Avogadro::QtPlugins::OpenBabel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel/openbabel.h:60: warning: Member openBabelInfo() const (function) of class Avogadro::QtPlugins::OpenBabel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs/opendxreader.h:47: warning: Found unknown command `\fileName' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:32: warning: Member OverlayAxes(QObject *parent=0) (function) of class Avogadro::QtPlugins::OverlayAxes is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:38: warning: Member processEditable(const QtGui::RWMolecule &molecule, Rendering::GroupNode &node) AVO_OVERRIDE (function) of class Avogadro::QtPlugins::OverlayAxes is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:55: warning: Member setMolecule(QtGui::Molecule *) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:56: warning: Member setGLRenderer(Rendering::GLRenderer *renderer) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:57: warning: Member setActiveWidget(QWidget *widget) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:122: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:41: warning: Member PlayerTool(QObject *p=NULL) (function) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:60: warning: Member back() (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:61: warning: Member forward() (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:62: warning: Member play() (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:63: warning: Member stop() (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:64: warning: Member animate(int advance=1) (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool/playertool.h:66: warning: Member recordMovie() (slot) of class Avogadro::QtPlugins::PlayerTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:36: warning: Member createInstance()=0 (function) of class Avogadro::QtPlugins::PluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:37: warning: Member identifier() const =0 (function) of class Avogadro::QtPlugins::PluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginfactory.h:38: warning: Member description() const =0 (function) of class Avogadro::QtPlugins::PluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginmanager.h:66: warning: Member load(const QString &dir) (function) of class Avogadro::QtPlugins::PluginManager is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginmanager.h:39: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginmanager.h:79: warning: argument 'name' of command @param is not found in the argument list of PluginManager::pluginFactory(const QString &id) const /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/pluginmanager.h:90: warning: The following parameters of Avogadro::QtPlugins::PluginManager::pluginFactory(const QString &id) const are not documented: parameter 'id' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray/povray.h:48: warning: Member setMolecule(QtGui::Molecule *mol) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::POVRay is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray/povray.h:49: warning: Member setScene(Rendering::Scene *scene) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::POVRay is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray/povray.h:50: warning: Member setCamera(Rendering::Camera *camera) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::POVRay is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray/povray.h:33: warning: Member POVRay(QObject *p=0) (function) of class Avogadro::QtPlugins::POVRay is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:36: warning: Member QTAIMCriticalPointLocator(QTAIMWavefunction &wfn) (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:37: warning: Member locateNuclearCriticalPoints() (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:38: warning: Member locateBondCriticalPoints() (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:40: warning: Member locateElectronDensitySources() (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:41: warning: Member locateElectronDensitySinks() (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:43: warning: Member nuclearCriticalPoints() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:44: warning: Member bondCriticalPoints() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:45: warning: Member ringCriticalPoints() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:46: warning: Member cageCriticalPoints() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:48: warning: Member laplacianAtBondCriticalPoints() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:49: warning: Member ellipticityAtBondCriticalPoints() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:51: warning: Member bondPaths() (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:52: warning: Member bondedAtoms() (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:54: warning: Member electronDensitySources() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h:55: warning: Member electronDensitySinks() const (function) of class Avogadro::QtPlugins::QTAIMCriticalPointLocator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcubature.h:122: warning: Member QTAIMCubature(QTAIMWavefunction &wfn) (function) of class Avogadro::QtPlugins::QTAIMCubature is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcubature.h:125: warning: Member integrate(qint64 mode, QList< qint64 > basins) (function) of class Avogadro::QtPlugins::QTAIMCubature is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimcubature.h:127: warning: Member setMode(qint64 mode) (function) of class Avogadro::QtPlugins::QTAIMCubature is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimengine.h:33: warning: Member QTAIMEngine(QObject *parent=0) (function) of class Avogadro::QtPlugins::QTAIMEngine is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.h:41: warning: Member setMolecule(QtGui::Molecule *molecule) AVO_OVERRIDE (slot) of class Avogadro::QtPlugins::QTAIMExtension is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimextension.h:32: warning: Member QTAIMExtension(QObject *parent=0) (function) of class Avogadro::QtPlugins::QTAIMExtension is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h:54: warning: Member QTAIMLSODAIntegrator(QTAIMWavefunctionEvaluator &eval, const qint64 mode) (function) of class Avogadro::QtPlugins::QTAIMLSODAIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h:56: warning: Member integrate(QVector3D x0y0z0) (function) of class Avogadro::QtPlugins::QTAIMLSODAIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h:58: warning: Member status() const (function) of class Avogadro::QtPlugins::QTAIMLSODAIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h:59: warning: Member path() const (function) of class Avogadro::QtPlugins::QTAIMLSODAIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h:61: warning: Member setBetaSpheres(QList< QPair< QVector3D, qreal > > betaSpheres) (function) of class Avogadro::QtPlugins::QTAIMLSODAIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h:62: warning: Member associatedSphere() const (function) of class Avogadro::QtPlugins::QTAIMLSODAIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h:51: warning: Member QTAIMODEIntegrator(QTAIMWavefunctionEvaluator &eval, const qint64 mode) (function) of class Avogadro::QtPlugins::QTAIMODEIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h:53: warning: Member integrate(QVector3D x0y0z0) (function) of class Avogadro::QtPlugins::QTAIMODEIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h:55: warning: Member status() const (function) of class Avogadro::QtPlugins::QTAIMODEIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h:56: warning: Member path() const (function) of class Avogadro::QtPlugins::QTAIMODEIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h:58: warning: Member setBetaSpheres(QList< QPair< QVector3D, qreal > > betaSpheres) (function) of class Avogadro::QtPlugins::QTAIMODEIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.h:59: warning: Member associatedSphere() const (function) of class Avogadro::QtPlugins::QTAIMODEIntegrator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:45: warning: Member saveToBinaryFile(const QString &fileName) (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:73: warning: Member loadFromBinaryFile(const QString &fileName) (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:101: warning: Member initializeWithWFNFile(const QString &fileName) (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:103: warning: Member initializeWithMoleculeProperties(QtGui::Molecule *&mol) (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:106: warning: Member numberOfMolecularOrbitals() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:107: warning: Member numberOfGaussianPrimitives() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:108: warning: Member numberOfNuclei() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:110: warning: Member xNuclearCoordinates() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:111: warning: Member yNuclearCoordinates() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:112: warning: Member zNuclearCoordinates() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:113: warning: Member xNuclearCoordinate(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:114: warning: Member yNuclearCoordinate(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:115: warning: Member zNuclearCoordinate(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:117: warning: Member nuclearCharges() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:118: warning: Member nuclearCharge(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:119: warning: Member nuclearChargesList() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:121: warning: Member xGaussianPrimitiveCenterCoordinates() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:122: warning: Member yGaussianPrimitiveCenterCoordinates() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:123: warning: Member zGaussianPrimitiveCenterCoordinates() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:124: warning: Member xGaussianPrimitiveCenterCoordinate(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:125: warning: Member yGaussianPrimitiveCenterCoordinate(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:126: warning: Member zGaussianPrimitiveCenterCoordinate(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:128: warning: Member xGaussianPrimitiveAngularMomenta() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:129: warning: Member yGaussianPrimitiveAngularMomenta() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:130: warning: Member zGaussianPrimitiveAngularMomenta() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:131: warning: Member xGaussianPrimitiveAngularMomentum(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:132: warning: Member yGaussianPrimitiveAngularMomentum(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:133: warning: Member zGaussianPrimitiveAngularMomentum(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:135: warning: Member gaussianPrimitiveExponentCoefficients() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:136: warning: Member gaussianPrimitiveExponentCoefficient(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:138: warning: Member molecularOrbitalOccupationNumbers() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:139: warning: Member molecularOrbitalOccupationNumber(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:141: warning: Member molecularOrbitalEigenvalues() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:142: warning: Member molecularOrbitalEigenvalue(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:144: warning: Member molecularOrbitalCoefficients() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:145: warning: Member molecularOrbitalCoefficient(qint64 i) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:146: warning: Member molecularOrbitalCoefficient(qint64 mo, qint64 prim) const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:148: warning: Member totalEnergy() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunction.h:149: warning: Member virialRatio() const (function) of class Avogadro::QtPlugins::QTAIMWavefunction is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:36: warning: Member QTAIMWavefunctionEvaluator(QTAIMWavefunction &wfn) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:38: warning: Member molecularOrbital(const qint64 mo, const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:39: warning: Member electronDensity(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:40: warning: Member gradientOfElectronDensity(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:41: warning: Member hessianOfElectronDensity(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:42: warning: Member gradientAndHessianOfElectronDensity(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:43: warning: Member laplacianOfElectronDensity(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:44: warning: Member electronDensityLaplacian(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:45: warning: Member gradientOfElectronDensityLaplacian(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:46: warning: Member hessianOfElectronDensityLaplacian(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:47: warning: Member gradientAndHessianOfElectronDensityLaplacian(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:48: warning: Member kineticEnergyDensityG(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:49: warning: Member kineticEnergyDensityK(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h:50: warning: Member quantumStressTensor(const Matrix< qreal, 3, 1 > xyz) (function) of class Avogadro::QtPlugins::QTAIMWavefunctionEvaluator is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput/quantuminput.h:77: warning: Member readMolecule(QtGui::Molecule &mol) (slot) of class Avogadro::QtPlugins::QuantumInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput/quantuminput.h:53: warning: Member QuantumInput(QObject *parent=0) (function) of class Avogadro::QtPlugins::QuantumInput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/quantumoutput.h:54: warning: Member QuantumOutput(QObject *parent=0) (function) of class Avogadro::QtPlugins::QuantumOutput is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h:36: warning: Member ScriptFileFormats(QObject *parent=0) (function) of class Avogadro::QtPlugins::ScriptFileFormats is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool/selectiontool.h:42: warning: Member SelectionTool(QObject *parent_=NULL) (function) of class Avogadro::QtPlugins::SelectionTool is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:55: warning: Member ToolPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/toolplugin.h:122: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h:48: warning: Member SlaterSetConcurrent(QObject *p=0) (function) of class Avogadro::QtPlugins::SlaterSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h:51: warning: Member setMolecule(Core::Molecule *mol) (function) of class Avogadro::QtPlugins::SlaterSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h:53: warning: Member calculateMolecularOrbital(Core::Cube *cube, unsigned int state) (function) of class Avogadro::QtPlugins::SlaterSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h:54: warning: Member calculateElectronDensity(Core::Cube *cube) (function) of class Avogadro::QtPlugins::SlaterSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h:55: warning: Member calculateSpinDensity(Core::Cube *cube) (function) of class Avogadro::QtPlugins::SlaterSetConcurrent is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/slatersetconcurrent.h:57: warning: Member watcher() (function) of class Avogadro::QtPlugins::SlaterSetConcurrent is not documented. compound Avogadro::QtOpenGL::GLWidget... Generating docs for compound Avogadro::QtOpenGL::QtTextRenderStrategy... Generating docs for compound Avogadro::QtPlugins::Apbs... Generating docs for compound Avogadro::QtPlugins::ApbsDialog... Generating docs for compound Avogadro::QtPlugins::ApbsOutputDialog... Generating docs for compound Avogadro::QtPlugins::BallAndStick... Generating docs for compound Avogadro::QtPlugins::BondCentricTool... Generating docs for compound Avogadro::QtPlugins::Bonding... Generating docs for compound Avogadro::QtPlugins::ClientServer... Generating docs for compound Avogadro::QtPlugins::ConnectionSettingsDialog... Generating docs for compound Avogadro::QtPlugins::CoordinateEditor... Generating docs for compound Avogadro::QtPlugins::CoordinateEditorDialog... Generating docs for compound Avogadro::QtPlugins::CoordinateTextEdit... Generating docs for compound Avogadro::QtPlugins::CopyPaste... Generating docs for compound Avogadro::QtPlugins::Crystal... Generating docs for compound Avogadro::QtPlugins::CrystalScene... Generating docs for compound Avogadro::QtPlugins::CustomElements... Generating docs for compound Avogadro::QtPlugins::Editor... Generating docs for compound Avogadro::QtPlugins::EditorToolWidget... Generating docs for compound Avogadro::QtPlugins::FileFormatScript... Generating docs for compound Avogadro::QtPlugins::GamessHighlighter... Generating docs for compound Avogadro::QtPlugins::GamessInput... Generating docs for compound Avogadro::QtPlugins::GamessInputDialog... Generating docs for compound Avogadro::QtPlugins::GaussianSetConcurrent... Generating docs for compound Avogadro::QtPlugins::Hydrogens... Generating docs for compound Avogadro::QtPlugins::ImportCrystalDialog... Generating docs for compound Avogadro::QtPlugins::Licorice... Generating docs for compound Avogadro::QtPlugins::LineFormatInput... Generating docs for compound Avogadro::QtPlugins::LineFormatInputDialog... Generating docs for compound Avogadro::QtPlugins::Manipulator... Generating docs for compound Avogadro::QtPlugins::MeasureTool... Generating docs for compound Avogadro::QtPlugins::Meshes... Generating docs for compound Avogadro::QtPlugins::MolecularProperties... Generating docs for compound Avogadro::QtPlugins::MolecularPropertiesDialog... Generating docs for compound Avogadro::QtPlugins::MongoChem... Generating docs for compound Avogadro::QtPlugins::Navigator... Generating docs for compound Avogadro::QtPlugins::NetworkDatabases... Generating docs for compound Avogadro::QtPlugins::OBFileFormat... Generating docs for compound Avogadro::QtPlugins::OBForceFieldDialog... Generating docs for compound Avogadro::QtPlugins::OBProcess... Generating docs for compound Avogadro::QtPlugins::OpenBabel... Generating docs for compound Avogadro::QtPlugins::OpenDxReader... Generating docs for compound Avogadro::QtPlugins::OverlayAxes... Generating docs for compound Avogadro::QtPlugins::PlayerTool... Generating docs for compound Avogadro::QtPlugins::PluginFactory... Generating docs for compound Avogadro::QtPlugins::PluginManager... Generating docs for compound Avogadro::QtPlugins::POVRay... Generating docs for compound Avogadro::QtPlugins::QTAIMCriticalPointLocator... Generating docs for compound Avogadro::QtPlugins::QTAIMCubature... Generating docs for compound Avogadro::QtPlugins::QTAIMEngine... Generating docs for compound Avogadro::QtPlugins::QTAIMExtension... Generating docs for compound Avogadro::QtPlugins::QTAIMLSODAIntegrator... Generating docs for compound Avogadro::QtPlugins::QTAIMODEIntegrator... Generating docs for compound Avogadro::QtPlugins::QTAIMWavefunction... Generating docs for compound Avogadro::QtPlugins::QTAIMWavefunctionEvaluator... Generating docs for compound Avogadro::QtPlugins::QuantumInput... Generating docs for compound Avogadro::QtPlugins::QuantumOutput... Generating docs for compound Avogadro::QtPlugins::ScriptFileFormats... Generating docs for compound Avogadro::QtPlugins::SelectionTool... Generating docs for compound Avogadro::QtPlugins::SlaterSetConcurrent... Generating docs for compound Avogadro:/builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup/spacegroup.h:41: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::SpaceGroup is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup/spacegroup.h:43: warning: Member moleculeChanged(unsigned int changes) (slot) of class Avogadro::QtPlugins::SpaceGroup is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup/spacegroup.h:32: warning: Member SpaceGroup(QObject *parent_=0) (function) of class Avogadro::QtPlugins::SpaceGroup is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:54: warning: Member setMode(int mode) (slot) of class Avogadro::QtPlugins::Spectra is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:55: warning: Member setAmplitude(int amplitude) (slot) of class Avogadro::QtPlugins::Spectra is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:56: warning: Member startVibrationAnimation() (slot) of class Avogadro::QtPlugins::Spectra is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:57: warning: Member stopVibrationAnimation() (slot) of class Avogadro::QtPlugins::Spectra is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:58: warning: Member openDialog() (slot) of class Avogadro::QtPlugins::Spectra is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/spectra.h:40: warning: Member Spectra(QObject *parent=0) (function) of class Avogadro::QtPlugins::Spectra is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/supercelldialog.h:45: warning: Member SupercellDialog(QWidget *p=0) (function) of class Avogadro::QtPlugins::SupercellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/supercelldialog.h:48: warning: Member buildSupercell(Avogadro::QtGui::Molecule &mol) (function) of class Avogadro::QtPlugins::SupercellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/supercelldialog.h:50: warning: Member displayInvalidFormatMessage() (function) of class Avogadro::QtPlugins::SupercellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h:53: warning: Member calculateClickedSignal(int index, float isosurfaceValue, float resolutionStepSize) (signal) of class Avogadro::QtPlugins::SurfaceDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h:39: warning: Member SurfaceDialog(QWidget *parent=0, Qt::WindowFlags f=0) (function) of class Avogadro::QtPlugins::SurfaceDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h:42: warning: Member setupBasis(int numElectrons, int numMOs) (function) of class Avogadro::QtPlugins::SurfaceDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h:43: warning: Member setupCube(int numCubes) (function) of class Avogadro::QtPlugins::SurfaceDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h:44: warning: Member reenableCalculateButton() (function) of class Avogadro::QtPlugins::SurfaceDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h:49: warning: Member resolutionComboChanged(int n) (slot) of class Avogadro::QtPlugins::SurfaceDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput/surfacedialog.h:50: warning: Member calculateClicked() (slot) of class Avogadro::QtPlugins::SurfaceDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmol.h:48: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::ThreeDMol is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmol.h:39: warning: Member ThreeDMol(QObject *parent_=0) (function) of class Avogadro::QtPlugins::ThreeDMol is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/extensionplugin.h:55: warning: Member ExtensionPlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmoldialog.h:53: warning: Member setMolecule(QtGui::Molecule *mol) (slot) of class Avogadro::QtPlugins::ThreeDMolDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmoldialog.h:47: warning: Member ThreeDMolDialog(QtGui::Molecule *mol, QWidget *parent_=0) (function) of class Avogadro::QtPlugins::ThreeDMolDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol/3dmoldialog.h:50: warning: Member molecule() (function) of class Avogadro::QtPlugins::ThreeDMolDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:49: warning: Member Mode (enumeration) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:57: warning: Member moleculeChanged(unsigned int changes) (slot) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:59: warning: Member parametersEdited() (slot) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:60: warning: Member cellMatrixEdited() (slot) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:61: warning: Member fractionalMatrixEdited() (slot) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:63: warning: Member apply() (slot) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:64: warning: Member revert() (slot) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:51: warning: Member UnitCellDialog(QWidget *parent=0) (function) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/unitcelldialog.h:54: warning: Member setMolecule(QtGui::Molecule *molecule) (function) of class Avogadro::QtPlugins::UnitCellDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals/vanderwaals.h:34: warning: Member VanDerWaals(QObject *parent=0) (function) of class Avogadro::QtPlugins::VanDerWaals is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h:35: warning: Member VanDerWaalsAO(QObject *parent=0) (function) of class Avogadro::QtPlugins::VanDerWaalsAO is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:83: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:52: warning: Member modeChanged(int mode) (signal) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:53: warning: Member amplitudeChanged(int amplitude) (signal) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:54: warning: Member startAnimation() (signal) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:55: warning: Member stopAnimation() (signal) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:42: warning: Member VibrationDialog(QWidget *parent=0, Qt::WindowFlags f=0) (function) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:45: warning: Member setMolecule(QtGui::Molecule *molecule) (function) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:46: warning: Member currentMode() const (function) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationdialog.h:49: warning: Member selectRow(QModelIndex) (slot) of class Avogadro::QtPlugins::VibrationDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:31: warning: Member VibrationModel(QObject *p=0) (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:33: warning: Member parent(const QModelIndex &child) const (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:34: warning: Member rowCount(const QModelIndex &parent) const (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:35: warning: Member columnCount(const QModelIndex &parent) const (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:37: warning: Member flags(const QModelIndex &index) const (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:39: warning: Member headerData(int section, Qt::Orientation orientation, int role) const (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:41: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:42: warning: Member data(const QModelIndex &index, int role) const (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:44: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:47: warning: Member clear() (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra/vibrationmodel.h:49: warning: Member setMolecule(QtGui::Molecule *mol) (function) of class Avogadro::QtPlugins::VibrationModel is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.h:38: warning: Member VolumeScalingDialog(QWidget *parent=0) (function) of class Avogadro::QtPlugins::VolumeScalingDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.h:41: warning: Member setCurrentVolume(double vol) (function) of class Avogadro::QtPlugins::VolumeScalingDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.h:42: warning: Member newVolume() const (function) of class Avogadro::QtPlugins::VolumeScalingDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal/volumescalingdialog.h:43: warning: Member transformAtoms() const (function) of class Avogadro::QtPlugins::VolumeScalingDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe/wireframe.h:33: warning: Member Wireframe(QObject *parent=0) (function) of class Avogadro::QtPlugins::Wireframe is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe/wireframe.h:50: warning: Member setupWidget() AVO_OVERRIDE (function) of class Avogadro::QtPlugins::Wireframe is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:51: warning: Member ScenePlugin(QObject *parent=0) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:60: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui/sceneplugin.h:86: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:84: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:86: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:87: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h:58: warning: argument 'fileName' of command @param is not found in the argument list of GAMESSUSOutput::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessus.h:58: warning: The following parameters of Avogadro::QuantumIO::GAMESSUSOutput::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.h:56: warning: argument 'fileName' of command @param is not found in the argument list of GaussianCube::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussiancube.h:56: warning: The following parameters of Avogadro::QuantumIO::GaussianCube::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h:64: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h:58: warning: argument 'fileName' of command @param is not found in the argument list of GaussianFchk::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gaussianfchk.h:58: warning: The following parameters of Avogadro::QuantumIO::GaussianFchk::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:49: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:50: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:62: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:63: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:64: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:65: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:66: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:67: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:68: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:71: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:72: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:76: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:77: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/gamessukout.h:78: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.h:58: warning: argument 'fileName' of command @param is not found in the argument list of MoldenFile::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/molden.h:58: warning: The following parameters of Avogadro::QuantumIO::MoldenFile::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h:35: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h:59: warning: argument 'fileName' of command @param is not found in the argument list of MopacAux::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/mopacaux.h:59: warning: The following parameters of Avogadro::QuantumIO::MopacAux::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.h:60: warning: argument 'fileName' of command @param is not found in the argument list of NWChemJson::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemjson.h:60: warning: The following parameters of Avogadro::QuantumIO::NWChemJson::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:35: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h:71: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:59: warning: argument 'fileName' of command @param is not found in the argument list of NWChemLog::write(std::ostream &out, const Core::Molecule &molecule) inherited from member write at line 128 in file /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io/fileformat.h /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio/nwchemlog.h:59: warning: The following parameters of Avogadro::QuantumIO::NWChemLog::write(std::ostream &out, const Core::Molecule &molecule) are not documented: parameter 'out' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.h:48: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.h:51: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.h:92: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/ambientocclusionspheregeometry.h:52: warning: Member swap(AmbientOcclusionSphereGeometry &lhs, AmbientOcclusionSphereGeometry &rhs) (friend) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/bufferobject.h:42: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/bufferobject.h:47: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:85: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:88: warning: Member colorOffset() (function) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:89: warning: Member normalOffset() (function) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:93: warning: Member vertexOffset() (function) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:79: warning: Member color (variable) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:80: warning: Member unusedAlign (variable) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:81: warning: Member normal (variable) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:82: warning: Member vertex (variable) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:83: warning: Member padding[4] (variable) of class Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:58: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:64: warning: Member vertexOffset() (function) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:65: warning: Member colorOffset() (function) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:66: warning: Member textureCoordOffset() (function) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:71: warning: Member textureCoord2Offset() (function) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:52: warning: Member vertex (variable) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:53: warning: Member color (variable) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:54: warning: Member unusedAlign (variable) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:55: warning: Member textureCoord (variable) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:56: warning: Member textureCoord2 (variable) of class Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:130: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:131: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:133: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:134: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:136: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:137: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:139: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:140: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:89: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:92: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:93: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:95: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:96: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:29: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of class Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:36: warning: Member end1 (variable) of class Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:37: warning: Member end2 (variable) of class Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:38: warning: Member radius (variable) of class Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:39: warning: Member color (variable) of class Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:40: warning: Member color2 (variable) of class Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:53: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:56: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:140: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:57: warning: Member swap(CylinderGeometry &lhs, CylinderGeometry &rhs) (friend) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:87: warning: argument 'position' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:87: warning: argument 'direction' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:87: warning: argument 'length' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:94: warning: The following parameters of Avogadro::Rendering::CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color) are not documented: parameter 'pos1' parameter 'pos2' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:98: warning: argument 'position' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color1, const Vector3ub &color2) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:98: warning: argument 'direction' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color1, const Vector3ub &color2) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:98: warning: argument 'length' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color1, const Vector3ub &color2) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:98: warning: argument 'colorStart' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color1, const Vector3ub &color2) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:98: warning: argument 'colorEnd' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color1, const Vector3ub &color2) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:106: warning: The following parameters of Avogadro::Rendering::CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color1, const Vector3ub &color2) are not documented: parameter 'pos1' parameter 'pos2' parameter 'color1' parameter 'color2' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:110: warning: argument 'position' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:110: warning: argument 'direction' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:110: warning: argument 'length' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:118: warning: The following parameters of Avogadro::Rendering::CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, size_t index) are not documented: parameter 'pos1' parameter 'pos2' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:123: warning: argument 'position' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, const Vector3ub &color2, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:123: warning: argument 'direction' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, const Vector3ub &color2, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:123: warning: argument 'length' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, const Vector3ub &color2, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:123: warning: argument 'colorStart' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, const Vector3ub &color2, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:123: warning: argument 'colorEnd' of command @param is not found in the argument list of CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, const Vector3ub &color2, size_t index) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/cylindergeometry.h:132: warning: The following parameters of Avogadro::Rendering::CylinderGeometry::addCylinder(const Vector3f &pos1, const Vector3f &pos2, float radius, const Vector3ub &color, const Vector3ub &color2, size_t index) are not documented: parameter 'pos1' parameter 'pos2' parameter 'color' parameter 'color2' /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:53: warning: Member swap(Drawable &lhs, Drawable &rhs) (friend) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometrynode.h:78: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:54: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:73: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometrynode.h:102: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:84: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:85: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(GroupNode &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:49: warning: Member visit(GeometryNode &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:50: warning: Member visit(Drawable &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:51: warning: Member visit(SphereGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:52: warning: Member visit(AmbientOcclusionSphereGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:53: warning: Member visit(CylinderGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:54: warning: Member visit(MeshGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:55: warning: Member visit(TextLabel2D &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:56: warning: Member visit(TextLabel3D &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/geometryvisitor.h:57: warning: Member visit(LineStripGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrenderer.h:86: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrenderer.h:90: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrenderer.h:94: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:40: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=NULL) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(GroupNode &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:58: warning: Member visit(GeometryNode &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:59: warning: Member visit(Drawable &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:60: warning: Member visit(SphereGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:61: warning: Member visit(AmbientOcclusionSphereGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:62: warning: Member visit(CylinderGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:63: warning: Member visit(MeshGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:64: warning: Member visit(TextLabel2D &geometry) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:65: warning: Member visit(TextLabel3D &geometry) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:66: warning: Member visit(LineStripGeometry &geometry) AVO_OVERRIDE (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:68: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/glrendervisitor.h:69: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h:39: warning: Member GroupNode(GroupNode *parent=0) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h:77: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:54: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:73: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h:85: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:84: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:85: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:36: warning: Member operator==(const Identifier &other) const (function) of class Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:42: warning: Member operator!=(const Identifier &other) const (function) of class Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:47: warning: Member isValid() const (function) of class Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:52: warning: Member molecule (variable) of class Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:53: warning: Member type (variable) of class Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:54: warning: Member index (variable) of class Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:48: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:51: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:45: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:52: warning: Member swap(LineStripGeometry &lhs, LineStripGeometry &rhs) (friend) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:71: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:40: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of class Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:41: warning: Member vertexOffset() (function) of class Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:42: warning: Member colorOffset() (function) of class Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:37: warning: Member vertex (variable) of class Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/linestripgeometry.h:38: warning: Member color (variable) of class Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:56: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:59: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:145: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:146: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:53: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:60: warning: Member swap(MeshGeometry &lhs, MeshGeometry &rhs) (friend) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:74: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:42: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:45: warning: Member colorOffset() (function) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:46: warning: Member normalOffset() (function) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:47: warning: Member vertexOffset() (function) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:37: warning: Member color (variable) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:38: warning: Member normal (variable) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:39: warning: Member vertex (variable) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/meshgeometry.h:40: warning: Member padding[4] (variable) of class Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:54: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:73: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:84: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:85: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:41: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:44: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:45: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:51: warning: Member visit(GroupNode &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:52: warning: Member visit(GeometryNode &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:53: warning: Member visit(Drawable &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:54: warning: Member visit(SphereGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:55: warning: Member visit(AmbientOcclusionSphereGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:56: warning: Member visit(CylinderGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:57: warning: Member visit(MeshGeometry &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:58: warning: Member visit(TextLabel2D &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:59: warning: Member visit(TextLabel3D &) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:60: warning: Member visit(LineStripGeometry &geometry) AVO_OVERRIDE (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:62: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:63: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:65: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:66: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/povrayvisitor.h:67: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:89: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:92: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:93: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:95: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:96: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:71: warning: Member operator==(const Identifier &other) const (function) of class Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:77: warning: Member operator!=(const Identifier &other) const (function) of class Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:82: warning: Member isValid() const (function) of class Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:84: warning: Member molecule (variable) of class Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:85: warning: Member type (variable) of class Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:86: warning: Member index (variable) of class Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/scene.h:117: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h:47: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h:80: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h:81: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h:82: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h:84: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shader.h:85: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:157: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:166: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:171: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:173: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:175: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:177: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:179: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/shaderprogram.h:180: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:106: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:110: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:111: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:113: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:114: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:89: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:92: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:93: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:95: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/primitive.h:96: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:30: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of class Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:32: warning: Member center (variable) of class Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:33: warning: Member radius (variable) of class Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:34: warning: Member color (variable) of class Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:53: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:56: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:96: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/spheregeometry.h:57: warning: Member swap(SphereGeometry &lhs, SphereGeometry &rhs) (friend) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:42: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:45: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:84: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:85: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:88: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:89: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:91: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:78: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:79: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:80: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:81: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:42: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:45: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:84: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:85: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:88: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:89: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:91: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:78: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:79: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:80: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:81: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:42: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:45: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:84: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:85: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:88: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:89: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:91: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:78: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:79: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:80: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:81: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textlabelbase.h:46: warning: Member swap(TextLabelBase &lhs, TextLabelBase &rhs) (friend) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:55: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:58: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:59: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:61: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:62: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:69: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:76: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:83: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:95: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:102: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:109: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:116: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:123: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/textproperties.h:130: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.h:120: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.h:121: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.h:122: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.h:164: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/texture2d.h:166: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/transformnode.h:36: warning: Member TransformNode(GroupNode *parent=0) (function) of class Avogadro::Rendering::TransformNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h:39: warning: Member GroupNode(GroupNode *parent=0) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h:77: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:54: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:73: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/groupnode.h:85: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:84: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/node.h:85: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:57: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:58: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:59: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:60: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:61: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:62: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:63: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:64: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:65: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/visitor.h:66: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:49: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:52: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:65: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:99: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:126: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:127: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:128: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering/drawable.h:129: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/vtk/vtkglwidget.h:50: warning: Member vtkGLWidget(QWidget *p=NULL, const QGLWidget *shareWidget=0, Qt::WindowFlags f=0) (function) of class Avogadro::VTK::vtkGLWidget is not documented. :QtPlugins::SpaceGroup... Generating docs for compound Avogadro::QtPlugins::Spectra... Generating docs for compound Avogadro::QtPlugins::SupercellDialog... Generating docs for compound Avogadro::QtPlugins::SurfaceDialog... Generating docs for compound Avogadro::QtPlugins::ThreeDMol... Generating docs for compound Avogadro::QtPlugins::ThreeDMolDialog... Generating docs for compound Avogadro::QtPlugins::UnitCellDialog... Generating docs for compound Avogadro::QtPlugins::VanDerWaals... Generating docs for compound Avogadro::QtPlugins::VanDerWaalsAO... Generating docs for compound Avogadro::QtPlugins::VibrationDialog... Generating docs for compound Avogadro::QtPlugins::VibrationModel... Generating docs for compound Avogadro::QtPlugins::VolumeScalingDialog... Generating docs for compound Avogadro::QtPlugins::Wireframe... Generating docs for compound Avogadro::QuantumIO::GamessukOut... Generating docs for compound Avogadro::QuantumIO::GAMESSUSOutput... Generating docs for compound Avogadro::QuantumIO::GaussianCube... Generating docs for compound Avogadro::QuantumIO::GaussianFchk... Generating docs for compound Avogadro::QuantumIO::GUKBasisSet... Generating docs for compound Avogadro::QuantumIO::MoldenFile... Generating docs for compound Avogadro::QuantumIO::MopacAux... Generating docs for compound Avogadro::QuantumIO::NWChemJson... Generating docs for compound Avogadro::QuantumIO::NWChemLog... Generating docs for compound Avogadro::Rendering::AmbientOcclusionSphereGeometry... Generating docs for compound Avogadro::Rendering::BufferObject... Generating docs for compound Avogadro::Rendering::Camera... Generating docs for compound Avogadro::Rendering::ColorNormalVertex... Generating docs for compound Avogadro::Rendering::ColorTextureVertex... Generating docs for compound Avogadro::Rendering::Cylinder... Generating docs for compound Avogadro::Rendering::CylinderColor... Generating docs for compound Avogadro::Rendering::CylinderGeometry... Generating docs for compound Avogadro::Rendering::Drawable... Generating docs for compound Avogadro::Rendering::GeometryNode... Generating docs for compound Avogadro::Rendering::GeometryVisitor... Generating docs for compound Avogadro::Rendering::GLRenderer... Generating docs for compound Avogadro::Rendering::GLRenderVisitor... Generating docs for compound Avogadro::Rendering::GroupNode... Generating docs for compound Avogadro::Rendering::Identifier... Generating docs for compound Avogadro::Rendering::LineStripGeometry... Generating docs for nested compound Avogadro::Rendering::LineStripGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::MeshGeometry... Generating docs for nested compound Avogadro::Rendering::MeshGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Node... Generating docs for compound Avogadro::Rendering::POVRayVisitor... Generating docs for compound Avogadro::Rendering::Primitive... Generating docs for nested compound Avogadro::Rendering::Primitive::Identifier... Generating docs for compound Avogadro::Rendering::Scene... Generating docs for compound Avogadro::Rendering::Shader... Generating docs for compound Avogadro::Rendering::ShaderProgram... Generating docs for compound Avogadro::Rendering::Sphere... Generating docs for compound Avogadro::Rendering::SphereColor... Generating docs for compound Avogadro::Rendering::SphereGeometry... Generating docs for compound Avogadro::Rendering::TextLabel2D... Generating docs for compound Avogadro::Rendering::TextLabel3D... Generating docs for compound Avogadro::Rendering::TextLabelBase... Generating docs for compound Avogadro::Rendering::TextProperties... Generating docs for compound Avogadro::Rendering::TextRenderStrategy... Generating docs for compound Avogadro::Rendering::Texture2D... Generating docs for compound Avogadro::Rendering::TransformNode... Generating docs for compound Avogadro::Rendering::Visitor... Generating docs for compound Avogadro::Rendering::VolumeGeometry... Generating docs for compound Avogadro::VTK::vtkGLWidget... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 3944/65536 hits=23829 misses=4904 finished... + popd ~/build/BUILD/avogadrolibs-1.90.0/build ~/build/BUILD/avogadrolibs-1.90.0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.8sB1MF + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm '!=' / ']' + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm ++ dirname /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm + cd avogadrolibs-1.90.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm -C build make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/cmake -H/builddir/build/BUILD/avogadrolibs-1.90.0 -B/builddir/build/BUILD/avogadrolibs-1.90.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.90.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.90.0/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'utilities/bodr/CMakeFiles/bodrparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 1%] Built target bodrparse /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.90.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'utilities/encodefile/CMakeFiles/encodefile.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 1%] Built target encodefile /usr/bin/make -f thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/build.make thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/thirdparty/jsoncpp /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/thirdparty/jsoncpp /builddir/build/BUILD/avogadrolibs-1.90.0/build/thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/build.make thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'thirdparty/jsoncpp/CMakeFiles/jsoncpp.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 2%] Built target jsoncpp /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/core/CMakeFiles/AvogadroCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 7%] Built target AvogadroCore /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/io/CMakeFiles/AvogadroIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 9%] Built target AvogadroIO /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 11%] Built target AvogadroQuantumIO /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avobabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 12%] Built target avobabel /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avocjsontocml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 12%] Built target avocjsontocml /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/qube.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 13%] Built target qube /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 24%] Built target AvogadroRendering /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 24%] Automatic MOC for target AvogadroQtGui cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 24%] Built target AvogadroQtGui_autogen /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 31%] Built target AvogadroQtGui /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 32%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 32%] Built target AvogadroQtOpenGL_autogen /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 33%] Built target AvogadroQtOpenGL /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 33%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 33%] Built target AvogadroMoleQueue_autogen /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 37%] Built target AvogadroMoleQueue /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 38%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 38%] Built target AvogadroQtPlugins_autogen /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 38%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 38%] Built target ThreeDMol_autogen /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 40%] Built target ThreeDMol /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 40%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 40%] Built target BondCentric_autogen /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 42%] Built target BondCentric /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 42%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 42%] Built target Bonding_autogen /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Built target Bonding /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 43%] Built target CoordinateEditor_autogen /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Built target CoordinateEditor /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 45%] Built target CopyPaste_autogen /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Built target CopyPaste /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 46%] Built target Crystal_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 49%] Built target Crystal /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 50%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 50%] Built target CrystalScene_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 51%] Built target CrystalScene /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 51%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 51%] Built target CustomElements_autogen /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 52%] Built target CustomElements /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 52%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 52%] Built target Editor_autogen /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 54%] Built target Editor /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 55%] Built target Hydrogens_autogen /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 56%] Built target Hydrogens /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 57%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 57%] Built target LineFormatInput_autogen /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Built target LineFormatInput /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 58%] Built target Manipulator_autogen /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Built target Manipulator /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 59%] Built target MeasureTool_autogen /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 61%] Built target MeasureTool /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 61%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 61%] Built target MolecularProperties_autogen /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 63%] Built target MolecularProperties /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 63%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 63%] Built target Navigator_autogen /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 65%] Built target Navigator /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 66%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 66%] Built target NetworkDatabases_autogen /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Built target NetworkDatabases /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 67%] Built target OpenBabel_autogen /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 69%] Built target OpenBabel /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 69%] Automatic MOC for target QuantumOutput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 69%] Built target QuantumOutput_autogen /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/build.make avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantumoutput/CMakeFiles/QuantumOutput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Built target QuantumOutput /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 71%] Built target PlayerTool_autogen /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Built target PlayerTool /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 73%] Built target POVRay_autogen /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 74%] Built target POVRay /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 74%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 74%] Built target Selection_autogen /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Built target Selection /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 76%] Built target SpaceGroup_autogen /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Built target SpaceGroup /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 77%] Built target Spectra_autogen /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 79%] Built target Spectra /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 79%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 79%] Built target apbs_autogen /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 81%] Built target apbs /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 81%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 81%] Built target MongoChem_autogen /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Built target MongoChem /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 82%] Built target GamessInput_autogen /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 84%] Built target GamessInput /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 85%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 85%] Built target QuantumInput_autogen /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Built target QuantumInput /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 86%] Built target ScriptFileFormats_autogen /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Built target ScriptFileFormats /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 87%] Built target BallStick_autogen /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Built target BallStick /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 88%] Built target Licorice_autogen /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 89%] Built target Licorice /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 90%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 90%] Built target VanDerWaals_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 91%] Built target VanDerWaals /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 91%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 91%] Built target Wireframe_autogen /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Built target Wireframe /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 92%] Built target Meshes_autogen /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 93%] Built target Meshes /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 93%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 93%] Built target OverlayAxes_autogen /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 94%] Built target OverlayAxes /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 94%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 94%] Built target VanDerWaalsAO_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Built target VanDerWaalsAO /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 95%] Built target QTAIMScenePlugin_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 96%] Built target QTAIMScenePlugin /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 96%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 96%] Built target QTAIMExtension_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 99%] Built target QTAIMExtension /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.90.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [ 99%] Built target AvogadroQtPlugins /usr/bin/make -f boostpython/CMakeFiles/avogadro-python.dir/build.make boostpython/CMakeFiles/avogadro-python.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' cd /builddir/build/BUILD/avogadrolibs-1.90.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.90.0 /builddir/build/BUILD/avogadrolibs-1.90.0/boostpython /builddir/build/BUILD/avogadrolibs-1.90.0/build /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython /builddir/build/BUILD/avogadrolibs-1.90.0/build/boostpython/CMakeFiles/avogadro-python.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/make -f boostpython/CMakeFiles/avogadro-python.dir/build.make boostpython/CMakeFiles/avogadro-python.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[2]: Nothing to be done for 'boostpython/CMakeFiles/avogadro-python.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' [100%] Built target avogadro-python make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.90.0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/AvogadroLibs/avogadrolibs/README.md -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/AvogadroLibs/avogadrolibs/CONTRIBUTING.md -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/AvogadroLibs/avogadrolibs/COPYING -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/cmake/avogadrolibs/AvogadroLibsConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/cmake/avogadrolibs/AvogadroLibsConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/cmake/avogadrolibs/FindEigen3.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/cmake/avogadrolibs/FindGLEW.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/cmake/avogadrolibs/AvogadroLibsTargets.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/cmake/avogadrolibs/AvogadroLibsTargets-release.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/libjsoncpp.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/avospglib.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/color3f.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/array.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/atom.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/atomtyper.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/atomtyper-inline.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/avogadrocore.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/basisset.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/bond.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/coordinateset.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/coordinateblockgenerator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/crystaltools.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/cube.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/elements.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/gaussianset.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/gaussiansettools.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/graph.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/matrix.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/mesh.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/molecule.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/mutex.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/nameatomtyper.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/ringperceiver.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/slaterset.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/slatersettools.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/spacegroups.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/symbolatomtyper.h -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/core/avogadrocoreexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroCore.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroCore.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/cjsonformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/cmlformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/fileformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/fileformatmanager.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/gromacsformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/mdlformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/poscarformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/xyzformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/hdf5dataformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/io/avogadroioexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroIO.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroIO.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/gamessus.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/gaussianfchk.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/gaussiancube.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/molden.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/mopacaux.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/nwchemjson.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/nwchemlog.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/quantumio/avogadroquantumioexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQuantumIO.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQuantumIO.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/avogadrogl.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/avogadrorendering.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/bufferobject.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/camera.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/cylindergeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/drawable.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/geometrynode.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/geometryvisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/groupnode.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/glrenderer.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/glrendervisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/linestripgeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/meshgeometry.h -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/visitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/volumegeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/rendering/avogadrorenderingexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroRendering.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroRendering.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/containerwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/customelementdialog.h -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/molecule.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/moleculemodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/multiviewwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/periodictableview.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/persistentatom.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/persistentbond.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/pythonscript.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/rwmolecule.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/sceneplugin.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/scenepluginmodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/toolplugin.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/utilities.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/viewfactory.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtgui/avogadroqtguiexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtGui.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtGui.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtopengl/glwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtopengl/qttextrenderstrategy.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtopengl/avogadroqtopenglexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtOpenGL.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtOpenGL.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/batchjob.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/inputgenerator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/inputgeneratordialog.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/inputgeneratorwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/molequeuedialog.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/molequeuemanager.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/molequeuequeuelistmodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/molequeuewidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/molequeue/avogadromolequeueexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroMoleQueue.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroMoleQueue.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtplugins/pluginmanager.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtplugins/pluginfactory.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtplugins/avogadrostaticqtplugins.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/include/avogadro2/avogadro/qtplugins/avogadroqtpluginsexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtPlugins.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtPlugins.so" to "/usr/lib" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/ThreeDMol.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/BondCentric.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Bonding.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/CoordinateEditor.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/CopyPaste.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Crystal.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/CrystalScene.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/CustomElements.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Editor.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Hydrogens.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/LineFormatInput.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Manipulator.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/MeasureTool.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/MolecularProperties.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Navigator.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/NetworkDatabases.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/OpenBabel.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/QuantumOutput.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/PlayerTool.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/POVRay.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Selection.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/SpaceGroup.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Spectra.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/apbs.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/MongoChem.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/GamessInput.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/QuantumInput.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/apbs.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/gaussian.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/molpro.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/mopac.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/nwchem.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/qchem.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/terachem.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/ScriptFileFormats.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/formatScripts/zyx.py -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/BallStick.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Licorice.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/VanDerWaals.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Wireframe.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/Meshes.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/OverlayAxes.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/VanDerWaalsAO.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/QTAIMExtension.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/avogadro2/staticplugins/QTAIMScenePlugin.a make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.90.0/build' + sed -i -e '1i#!/usr/bin/python3' /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/apbs.py /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/gaussian.py /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/molpro.py /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/mopac.py /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/nwchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/qchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/inputGenerators/terachem.py + sed -i -e '1i#!/usr/bin/python3' /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6/site-packages/avogadro2/scripts/formatScripts/zyx.py + chrpath -d /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroCore.so /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroMoleQueue.so /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtGui.so /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtOpenGL.so /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtPlugins.so /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQuantumIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroRendering.so + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m --build-id-seed 1.90.0-7.fc27 --unique-debug-suffix -1.90.0-7.fc27.arm --unique-debug-src-base avogadro2-libs-1.90.0-7.fc27.arm --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/avogadrolibs-1.90.0 extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroIO.so extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroRendering.so extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtPlugins.so extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQuantumIO.so extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtGui.so extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroCore.so extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroQtOpenGL.so extracting debug info from /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/libAvogadroMoleQueue.so /usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. 7999 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/lib/python3.6 using /usr/bin/python3.6 + /usr/lib/rpm/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.L8eYo3 + umask 022 + cd /builddir/build/BUILD ~/build/BUILD/avogadrolibs-1.90.0/build ~/build/BUILD/avogadrolibs-1.90.0 + cd avogadrolibs-1.90.0 + pushd build + exit 0 Processing files: avogadro2-libs-1.90.0-7.fc27.armv7hl Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.0TptAr + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.90.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/avogadro2-libs + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/avogadro2-libs + cp -pr README.md /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/avogadro2-libs + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.vTXgkT + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.90.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/licenses/avogadro2-libs + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/licenses/avogadro2-libs + cp -pr COPYING /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/licenses/avogadro2-libs + exit 0 Provides: avogadro2-libs = 1.90.0-7.fc27 avogadro2-libs(armv7hl-32) = 1.90.0-7.fc27 avogadro2-libs-static = 1.90.0-7.fc27 jsoncpp-static libAvogadroCore.so libAvogadroIO.so libAvogadroMoleQueue.so libAvogadroQtGui.so libAvogadroQtOpenGL.so libAvogadroQtPlugins.so libAvogadroQuantumIO.so libAvogadroRendering.so Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: /usr/bin/python3 ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libAvogadroCore.so libAvogadroIO.so libAvogadroMoleQueue.so libAvogadroQtGui.so libAvogadroQtOpenGL.so libAvogadroQuantumIO.so libAvogadroRendering.so libGL.so.1 libGLEW.so.2.0 libMoleQueueClient.so libQt5Concurrent.so.5 libQt5Concurrent.so.5(Qt_5) libQt5Core.so.5 libQt5Core.so.5(Qt_5) libQt5Gui.so.5 libQt5Gui.so.5(Qt_5) libQt5Network.so.5 libQt5Network.so.5(Qt_5) libQt5OpenGL.so.5 libQt5OpenGL.so.5(Qt_5) libQt5Widgets.so.5 libQt5Widgets.so.5(Qt_5) libc.so.6 libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.4) libgcc_s.so.1(GCC_3.5) libhdf5.so.10 libm.so.6 libm.so.6(GLIBC_2.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_ARM_1.3.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libsymspg.so.0 python(abi) = 3.6 rtld(GNU_HASH) Processing files: avogadro2-libs-devel-1.90.0-7.fc27.armv7hl Provides: avogadro2-libs-devel = 1.90.0-7.fc27 avogadro2-libs-devel(armv7hl-32) = 1.90.0-7.fc27 cmake(AvogadroLibs) = 1.90.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-doc-1.90.0-7.fc27.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.iL9bbk + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.90.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/avogadro2-libs-doc + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/avogadro2-libs-doc + cp -pr README.md /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/avogadro2-libs-doc + cp -pr build/docs/html /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/doc/avogadro2-libs-doc + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.3PAVB9 + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.90.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/licenses/avogadro2-libs-doc + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/licenses/avogadro2-libs-doc + cp -pr COPYING /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm/usr/share/licenses/avogadro2-libs-doc + exit 0 Provides: avogadro2-libs-doc = 1.90.0-7.fc27 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debuginfo-1.90.0-7.fc27.armv7hl Provides: avogadro2-libs-debuginfo = 1.90.0-7.fc27 avogadro2-libs-debuginfo(armv7hl-32) = 1.90.0-7.fc27 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm Wrote: /builddir/build/RPMS/avogadro2-libs-1.90.0-7.fc27.armv7hl.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.90.0-7.fc27.armv7hl.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.90.0-7.fc27.noarch.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.90.0-7.fc27.armv7hl.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.2qEWge + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.90.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.90.0-7.fc27.arm + exit 0 Child return code was: 0