Mock Version: 1.3.4
Mock Version: 1.3.4
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R-quadprog.spec'], chrootPath='/var/lib/mock/f28-build-12362678-907184/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fac3a1bbfd0>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R-quadprog.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: i686
Building for target i686
Wrote: /builddir/build/SRPMS/R-quadprog-1.5.5-1.fc28.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R-quadprog.spec'], chrootPath='/var/lib/mock/f28-build-12362678-907184/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fac3a1bbfd0>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R-quadprog.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: i686
Building for target i686
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.D4FQI0
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf quadprog
+ /usr/bin/mkdir -p quadprog
+ cd quadprog
+ /usr/bin/gzip -dc /builddir/build/SOURCES/quadprog_1.5-5.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
~/build/BUILD/quadprog/quadprog ~/build/BUILD/quadprog
Patch #1 (Fix-FSF-address.patch):
+ pushd quadprog
+ echo 'Patch #1 (Fix-FSF-address.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file src/aind.f
patching file src/solve.QP.compact.f
patching file src/solve.QP.f
~/build/BUILD/quadprog
+ popd
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ffjAFa
+ umask 022
+ cd /builddir/build/BUILD
+ cd quadprog
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2MrICk
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386
++ dirname /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386
+ cd quadprog
+ mkdir -p /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386/usr/lib/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386/usr/lib/R/library quadprog
* installing *source* package 'quadprog' ...
files 'src/aind.f', 'src/solve.QP.compact.f', 'src/solve.QP.f' have the wrong MD5 checksums
** libs
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib/gfortran/modules  -c aind.f -o aind.o
gcc -m32 -I/usr/include/R -DNDEBUG   -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection  -c init.c -o init.o
gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib/gfortran/modules -ffloat-store   -c -o solve.QP.compact.o solve.QP.compact.f
solve.QP.compact.f:254:3:
  72   if (nvl .EQ. 0) then
   1
Warning: Label 72 at (1) defined but not used [-Wunused-label]
solve.QP.compact.f:302:2:
  7       t1inf = .FALSE.
  1
Warning: Label 7 at (1) defined but not used [-Wunused-label]
solve.QP.compact.f:94:0:
      *     info, q, fdamat, iamat(fdamat+1,*), iact(*), iter(*), it1,
 
Warning: 'it1' may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib/gfortran/modules -ffloat-store   -c -o solve.QP.o solve.QP.f
solve.QP.f:245:3:
  72   if (nvl .EQ. 0) then
   1
Warning: Label 72 at (1) defined but not used [-Wunused-label]
solve.QP.f:293:2:
  7       t1inf = .FALSE.
  1
Warning: Label 7 at (1) defined but not used [-Wunused-label]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib/gfortran/modules  -c util.f -o util.o
g++ -m32 -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o quadprog.so aind.o init.o solve.QP.compact.o solve.QP.o util.o -L/usr/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386/usr/lib/R/library/quadprog/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'quadprog'
    finding HTML links ... done
    solve.QP                                html  
    solve.QP.compact                        html  
** building package indices
** testing if installed package can be loaded
* DONE (quadprog)
+ test -d quadprog/src
+ cd quadprog/src
+ rm -f aind.o init.o solve.QP.compact.o solve.QP.o util.o quadprog.so
+ rm -f /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386/usr/lib/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 1.5.5-1.fc28 --unique-debug-suffix -1.5.5-1.fc28.i386 --unique-debug-src-base R-quadprog-1.5.5-1.fc28.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/quadprog
extracting debug info from /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386/usr/lib/R/library/quadprog/libs/quadprog.so
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
87 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs '' ''
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.qtlcoz
+ umask 022
+ cd /builddir/build/BUILD
+ cd quadprog
+ /usr/bin/R CMD check quadprog
* using log directory '/builddir/build/BUILD/quadprog/quadprog.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: i686-redhat-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'quadprog/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quadprog' version '1.5-5'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.6/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.6/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.6/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.6/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.6/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'quadprog' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'Gwen.R'
  Comparing 'Gwen.Rout' to 'Gwen.Rout.save' ... OK
  Running 'TalbotKatz.R'
  Comparing 'TalbotKatz.Rout' to 'TalbotKatz.Rout.save' ... OK
  Running 'test1.R'
  Comparing 'test1.Rout' to 'test1.Rout.save' ... OK
  Running 'test2.R'
  Comparing 'test2.Rout' to 'test2.Rout.save' ... OK
 OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  '/builddir/build/BUILD/quadprog/quadprog.Rcheck/00check.log'
for details.
+ exit 0
Processing files: R-quadprog-1.5.5-1.fc28.i686
Provides: R-quadprog = 1.5.5-1.fc28 R-quadprog(x86-32) = 1.5.5-1.fc28
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libR.so libRblas.so libc.so.6 libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgfortran.so.5 libm.so.6 libquadmath.so.0 libstdc++.so.6 rtld(GNU_HASH)
Processing files: R-quadprog-debugsource-1.5.5-1.fc28.i686
Provides: R-quadprog-debugsource = 1.5.5-1.fc28 R-quadprog-debugsource(x86-32) = 1.5.5-1.fc28
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-quadprog-debuginfo-1.5.5-1.fc28.i686
Provides: R-quadprog-debuginfo = 1.5.5-1.fc28 R-quadprog-debuginfo(x86-32) = 1.5.5-1.fc28 debuginfo(build-id) = 46ddbeef9e55166380a79b9353a767d34cc41a23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-quadprog-debugsource(x86-32) = 1.5.5-1.fc28
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386
Wrote: /builddir/build/RPMS/R-quadprog-1.5.5-1.fc28.i686.rpm
Wrote: /builddir/build/RPMS/R-quadprog-debugsource-1.5.5-1.fc28.i686.rpm
Wrote: /builddir/build/RPMS/R-quadprog-debuginfo-1.5.5-1.fc28.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.oCXSNh
+ umask 022
+ cd /builddir/build/BUILD
+ cd quadprog
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-quadprog-1.5.5-1.fc28.i386
+ exit 0
Child return code was: 0