Mock Version: 1.4.14 Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-ggplot2.spec'], chrootPath='/var/lib/mock/f28-build-15840439-1137373/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-ggplot2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch Wrote: /builddir/build/SRPMS/R-ggplot2-3.1.1-1.fc28.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-ggplot2.spec'], chrootPath='/var/lib/mock/f28-build-15840439-1137373/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-ggplot2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: noarch Building for target noarch Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SRb96p + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ggplot2 + /usr/bin/mkdir -p ggplot2 + cd ggplot2 + /usr/bin/gzip -dc /builddir/build/SOURCES/ggplot2_3.1.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd ggplot2 ~/build/BUILD/ggplot2/ggplot2 ~/build/BUILD/ggplot2 + echo 'Patch #1 (0001-Don-t-run-Hmisc-examples.patch):' Patch #1 (0001-Don-t-run-Hmisc-examples.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file R/stat-summary.r patching file man/hmisc.Rd + sed -i 's/covr, //g' DESCRIPTION + popd ~/build/BUILD/ggplot2 + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.994Pxd + umask 022 + cd /builddir/build/BUILD + cd ggplot2 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6W2ZY0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch + cd ggplot2 + mkdir -p /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch/usr/share/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch/usr/share/R/library ggplot2 BUILDSTDERR: * installing *source* package 'ggplot2' ... files 'DESCRIPTION', 'R/stat-summary.r', 'man/hmisc.Rd' have the wrong MD5 checksums BUILDSTDERR: ** R BUILDSTDERR: ** data BUILDSTDERR: *** moving datasets to lazyload DB BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'ggplot2' BUILDSTDERR: finding HTML links ... done absoluteGrob html add_theme html aes html aes_ html aes_all html aes_auto html aes_colour_fill_alpha html aes_group_order html aes_linetype_size_shape html aes_position html annotate html annotation_custom html annotation_logticks html annotation_map html annotation_raster html as.list.ggproto html as_labeller html autolayer html autoplot html benchplot html borders html calc_element html combine_vars html continuous_scale html coord_cartesian html coord_fixed html coord_flip html coord_map html coord_munch html coord_polar html coord_trans html cut_interval html diamonds html discrete_scale html draw_key html economics html element html element_grob html expand_limits html expand_scale html facet_grid html facet_null html facet_wrap html faithfuld html find_panel html fortify-multcomp html fortify html fortify.lm html fortify.map html fortify.sp html geom_abline html geom_bar html geom_bin2d html geom_blank html geom_boxplot html geom_contour html geom_count html geom_density html Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/geom_density.Rd:65: file link 'bw.nrd' in package 'stats' does not exist and so has been treated as a topic geom_density_2d html geom_dotplot html geom_errorbarh html geom_hex html geom_histogram html geom_jitter html geom_linerange html geom_map html geom_path html geom_point html geom_polygon html geom_qq html geom_quantile html geom_ribbon html geom_rug html geom_segment html Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/geom_segment.Rd:88: file link 'curveGrob' in package 'grid' does not exist and so has been treated as a topic geom_smooth html geom_spoke html geom_text html geom_tile html geom_violin html Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/geom_violin.Rd:76: file link 'bw.nrd' in package 'stats' does not exist and so has been treated as a topic gg-add html gg_dep html ggplot html BUILDSTDERR: ggplot2-ggproto html BUILDSTDERR: finding level-2 HTML links ... done ggplot2-package html ggplotGrob html ggplot_add html ggplot_build html ggplot_gtable html ggproto html ggsave html ggsf html ggtheme html graphical-units html guide-exts html guide_colourbar html guide_legend html guides html hmisc html is.Coord html is.facet html is.ggplot html is.rel html is.theme html label_bquote html labeller html labellers html labs html last_plot html layer html limits html lims html luv_colours html map_data html max_height html mean_se html merge_element html midwest html mpg html msleep html position_dodge html position_identity html position_jitter html position_jitterdodge html position_nudge html position_stack html presidential html print.ggplot html print.ggproto html qplot html reexports html remove_missing html render_axes html render_strips html resolution html scale_alpha html scale_brewer html Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/scale_brewer.Rd:37: file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a topic scale_colour_continuous html scale_continuous html scale_date html scale_discrete html scale_gradient html scale_grey html scale_hue html scale_identity html scale_linetype html scale_manual html scale_shape html scale_size html scale_type html scale_viridis html seals html sec_axis html set_last_plot html should_stop html standardise_aes_names html stat html stat_ecdf html stat_ellipse html stat_function html stat_identity html stat_sf_coordinates html stat_summary html stat_summary_2d html stat_unique html summarise_plot html summary.ggplot html theme html theme_get html tidyeval html Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:23: file link 'syms' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:25: file link 'expr' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:25: file link 'quo' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:28: file link 'exprs' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:29: file link 'quos' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:31: file link 'enexpr' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:31: file link 'enquo' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:35: file link 'enexprs' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/ggplot2/ggplot2/man/tidyeval.Rd:35: file link 'enquos' in package 'rlang' does not exist and so has been treated as a topic transform_position html translate_qplot_ggplot html translate_qplot_lattice html txhousing html update_defaults html update_labels html vars html waiver html wrap_dims html zeroGrob html BUILDSTDERR: *** copying figures BUILDSTDERR: ** building package indices BUILDSTDERR: ** installing vignettes BUILDSTDERR: ** testing if installed package can be loaded BUILDSTDERR: * DONE (ggplot2) + test -d ggplot2/src + rm -f /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch/usr/share/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 3.1.1-1.fc28 --unique-debug-suffix -3.1.1-1.fc28.noarch --unique-debug-src-base R-ggplot2-3.1.1-1.fc28.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ggplot2 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs '' '' Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Wx3Qnw + umask 022 + cd /builddir/build/BUILD + cd ggplot2 + export LANG=C.UTF-8 + LANG=C.UTF-8 + ARGS=--no-examples + _R_CHECK_FORCE_SUGGESTS_=0 + /usr/bin/R CMD check ggplot2 --no-examples * using log directory ‘/builddir/build/BUILD/ggplot2/ggplot2.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: i686-redhat-linux-gnu (32-bit) * using session charset: UTF-8 * using option ‘--no-examples’ * checking for file ‘ggplot2/DESCRIPTION’ ... OK * this is package ‘ggplot2’ version ‘3.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK BUILDSTDERR: * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: BUILDSTDERR: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/bioc/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/bioc/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/annotation/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/data/annotation/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/experiment/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.8/data/experiment/src/contrib/PACKAGES' NOTE Packages suggested but not available for checking: ‘dplyr’ ‘ggplot2movies’ ‘Hmisc’ ‘maptools’ ‘vdiffr’ ‘quantreg’ ‘sf’ ‘svglite’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ggplot2’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... WARNING Error: package or namespace load failed for ‘ggplot2’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘gtable’ Execution halted It looks like this package has a loading problem when not on .libPaths: see the messages for details. * checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘mgcv’ ‘reshape2’ ‘viridisLite’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Unknown packages ‘quantreg’, ‘Hmisc’ in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... SKIPPED * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... BUILDSTDERR: Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘extending-ggplot2.Rmd’ using ‘UTF-8’ ... OK ‘ggplot2-specs.Rmd’ using ‘UTF-8’ ... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 2 NOTEs BUILDSTDERR: See BUILDSTDERR: ‘/builddir/build/BUILD/ggplot2/ggplot2.Rcheck/00check.log’ BUILDSTDERR: for details. + exit 0 Processing files: R-ggplot2-3.1.1-1.fc28.noarch Provides: R-ggplot2 = 3.1.1-1.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Suggests: R-Hmisc R-dplyr R-hexbin R-mapproj R-maps R-maptools R-quantreg R-sf >= 0.3.4 R-svglite >= 1.2.0.9001 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch Wrote: /builddir/build/RPMS/R-ggplot2-3.1.1-1.fc28.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.p91A8P + umask 022 + cd /builddir/build/BUILD + cd ggplot2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-ggplot2-3.1.1-1.fc28.noarch + exit 0 Child return code was: 0