Mock Version: 1.3.4
Mock Version: 1.3.4
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-R.utils.spec'], chrootPath='/var/lib/mock/f28-build-11956487-884285/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fab08e21e10>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-R.utils.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
Wrote: /builddir/build/SRPMS/R-R.utils-2.6.0-1.fc28.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-R.utils.spec'], chrootPath='/var/lib/mock/f28-build-11956487-884285/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fab08e21e10>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-R.utils.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.LbUNQ5
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf R.utils
+ /usr/bin/mkdir -p R.utils
+ cd R.utils
+ /usr/bin/gzip -dc /builddir/build/SOURCES/R.utils_2.6.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ chmod -x R.utils/NEWS R.utils/DESCRIPTION
+ chmod -x R.utils/inst/data-ex/HISTORY.LNK R.utils/inst/data-ex/NEWS.LNK R.utils/inst/data-ex/exampleVComments.R R.utils/inst/data-ex/lnkFileWith10BitsInFlag.lnk R.utils/man/Arguments.Rd R.utils/man/Assert.Rd R.utils/man/FileProgressBar.Rd R.utils/man/GString-class.Rd R.utils/man/Java.Rd R.utils/man/LComments.Rd R.utils/man/MultiVerbose.Rd R.utils/man/Non-documented_objects.Rd R.utils/man/NullVerbose.Rd R.utils/man/Options.Rd R.utils/man/ProgressBar.Rd R.utils/man/R.utils-package.Rd R.utils/man/Settings.Rd R.utils/man/SmartComments.Rd R.utils/man/Sys.readlink2.Rd R.utils/man/System.Rd R.utils/man/TextStatusBar.Rd R.utils/man/TimeoutException.Rd R.utils/man/VComments.Rd R.utils/man/Verbose.Rd R.utils/man/addFinalizerToLast.Rd R.utils/man/arrayIndex.Rd R.utils/man/as.character.GString.Rd R.utils/man/as.character.Options.Rd R.utils/man/as.character.ProgressBar.Rd R.utils/man/as.character.Verbose.Rd R.utils/man/as.character.binmode.Rd R.utils/man/as.double.Verbose.Rd R.utils/man/as.list.MultiVerbose.Rd R.utils/man/as.list.Options.Rd R.utils/man/as.logical.Verbose.Rd R.utils/man/asByte.Java.Rd R.utils/man/asInt.Java.Rd R.utils/man/asLong.Java.Rd R.utils/man/asShort.Java.Rd R.utils/man/attachLocally.list.Rd R.utils/man/callHooks.Rd R.utils/man/callHooks.function.Rd R.utils/man/capitalize.Rd R.utils/man/capture.Verbose.Rd R.utils/man/captureOutput.Rd R.utils/man/cat.Verbose.Rd R.utils/man/check.Assert.Rd R.utils/man/cleanup.FileProgressBar.Rd R.utils/man/cmdArgs.Rd R.utils/man/cmdArgsCall.Rd R.utils/man/colClasses.Rd R.utils/man/commandArgs.Rd R.utils/man/compile.SmartComments.Rd R.utils/man/compressFile.Rd R.utils/man/compressPDF.Rd R.utils/man/convertComment.SmartComments.Rd R.utils/man/convertComment.VComments.Rd R.utils/man/copyDirectory.Rd R.utils/man/copyFile.Rd R.utils/man/countLines.Rd R.utils/man/createFileAtomically.Rd R.utils/man/createLink.Rd R.utils/man/createWindowsShortcut.Rd R.utils/man/currentTimeMillis.System.Rd R.utils/man/dataFrame.Rd R.utils/man/detachPackage.Rd R.utils/man/dimNALT_-.Rd R.utils/man/displayCode.Rd R.utils/man/doCall.Rd R.utils/man/downloadFile.character.Rd R.utils/man/draw.density.Rd R.utils/man/eget.Rd R.utils/man/egsub.Rd R.utils/man/enter.Verbose.Rd R.utils/man/env.Rd R.utils/man/equals.Options.Rd R.utils/man/equals.Verbose.Rd R.utils/man/evaluate.GString.Rd R.utils/man/evaluate.Verbose.Rd R.utils/man/exit.Verbose.Rd R.utils/man/extract.array.Rd R.utils/man/file.info2.Rd R.utils/man/fileAccess.Rd R.utils/man/filePath.Rd R.utils/man/finalizeSession.Rd R.utils/man/findFiles.Rd R.utils/man/findGhostscript.System.Rd R.utils/man/findGraphicsDevice.System.Rd R.utils/man/findSettings.Settings.Rd R.utils/man/findSourceTraceback.Rd R.utils/man/flush.TextStatusBar.Rd R.utils/man/gcDLLs.Rd R.utils/man/gcat.Rd R.utils/man/getAbsolutePath.Rd R.utils/man/getBarString.ProgressBar.Rd R.utils/man/getBuiltinDate.GString.Rd R.utils/man/getBuiltinDatetime.GString.Rd R.utils/man/getBuiltinHostname.GString.Rd R.utils/man/getBuiltinOs.GString.Rd R.utils/man/getBuiltinPid.GString.Rd R.utils/man/getBuiltinRhome.GString.Rd R.utils/man/getBuiltinRversion.GString.Rd R.utils/man/getBuiltinTime.GString.Rd R.utils/man/getBuiltinUsername.GString.Rd R.utils/man/getCharacters.Arguments.Rd R.utils/man/getDoubles.Arguments.Rd R.utils/man/getEnvironment.Arguments.Rd R.utils/man/getFilename.Arguments.Rd R.utils/man/getHostname.System.Rd R.utils/man/getIndices.Arguments.Rd R.utils/man/getInstanceOf.Arguments.Rd R.utils/man/getIntegers.Arguments.Rd R.utils/man/getLabel.TextStatusBar.Rd R.utils/man/getLeaves.Options.Rd R.utils/man/getLoadedPathname.Settings.Rd R.utils/man/getLogicals.Arguments.Rd R.utils/man/getMessage.TimeoutException.Rd R.utils/man/getNumerics.Arguments.Rd R.utils/man/getOption.Options.Rd R.utils/man/getParent.Rd R.utils/man/getRaw.GString.Rd R.utils/man/getReadablePathname.Arguments.Rd R.utils/man/getReadablePathnames.Arguments.Rd R.utils/man/getRegularExpression.Arguments.Rd R.utils/man/getRelativePath.Rd R.utils/man/getThreshold.Verbose.Rd R.utils/man/getTimestampFormat.Verbose.Rd R.utils/man/getUsername.System.Rd R.utils/man/getVariableValue.GString.Rd R.utils/man/getVector.Arguments.Rd R.utils/man/getVerbose.Arguments.Rd R.utils/man/getWritablePathname.Arguments.Rd R.utils/man/gstring.Rd R.utils/man/hasOption.Options.Rd R.utils/man/hasUrlProtocol.Rd R.utils/man/header.Verbose.Rd R.utils/man/hpaste.Rd R.utils/man/hsize.Rd R.utils/man/inAnyInterval.numeric.Rd R.utils/man/increase.ProgressBar.Rd R.utils/man/inherits.Assert.Rd R.utils/man/insert.Rd R.utils/man/installPackages.Rd R.utils/man/intToBin.Rd R.utils/man/intervalsToSeq.matrix.Rd R.utils/man/isAbsolutePath.Rd R.utils/man/isDirectory.Rd R.utils/man/isDone.ProgressBar.Rd R.utils/man/isEof.connection.Rd R.utils/man/isFile.Rd R.utils/man/isMatrix.Assert.Rd R.utils/man/isModified.Settings.Rd R.utils/man/isOn.NullVerbose.Rd R.utils/man/isOn.Verbose.Rd R.utils/man/isOpen.character.Rd R.utils/man/isPackageInstalled.Rd R.utils/man/isPackageLoaded.Rd R.utils/man/isReplicated.Rd R.utils/man/isScalar.Assert.Rd R.utils/man/isSingle.Rd R.utils/man/isUrl.Rd R.utils/man/isVector.Assert.Rd R.utils/man/isVisible.NullVerbose.Rd R.utils/man/isVisible.Verbose.Rd R.utils/man/isZero.Rd R.utils/man/lastModified.Rd R.utils/man/less.Verbose.Rd R.utils/man/listDirectory.Rd R.utils/man/loadAnywhere.Settings.Rd R.utils/man/loadObject.Rd R.utils/man/loadToEnv.Rd R.utils/man/mapToIntervals.numeric.Rd R.utils/man/mergeIntervals.numeric.Rd R.utils/man/mkdirs.Rd R.utils/man/more.Verbose.Rd R.utils/man/mout.Rd R.utils/man/moveInSearchPath.Rd R.utils/man/mpager.Rd R.utils/man/names.Options.Rd R.utils/man/nbrOfOptions.Options.Rd R.utils/man/newline.TextStatusBar.Rd R.utils/man/newline.Verbose.Rd R.utils/man/nullfile.Rd R.utils/man/off.Verbose.Rd R.utils/man/on.Verbose.Rd R.utils/man/onGarbageCollect.Rd R.utils/man/onSessionExit.Rd R.utils/man/openBrowser.System.Rd R.utils/man/parse.GString.Rd R.utils/man/parse.SmartComments.Rd R.utils/man/parseDebian.System.Rd R.utils/man/patchCode.Rd R.utils/man/popBackupFile.Rd R.utils/man/popMessage.TextStatusBar.Rd R.utils/man/popTemporaryFile.Rd R.utils/man/print.GString.Rd R.utils/man/print.Verbose.Rd R.utils/man/printf.Rd R.utils/man/printf.Verbose.Rd R.utils/man/promptAndSave.Settings.Rd R.utils/man/pushBackupFile.Rd R.utils/man/pushState.Verbose.Rd R.utils/man/pushTemporaryFile.Rd R.utils/man/queryRCmdCheck.Rd R.utils/man/readBinFragments.Rd R.utils/man/readByte.Java.Rd R.utils/man/readInt.Java.Rd R.utils/man/readRdHelp.Rd R.utils/man/readShort.Java.Rd R.utils/man/readTable.Rd R.utils/man/readTableIndex.Rd R.utils/man/readUTF.Java.Rd R.utils/man/readWindowsShellLink.Rd R.utils/man/readWindowsShortcut.Rd R.utils/man/reassignInPackage.Rd R.utils/man/removeDirectory.Rd R.utils/man/renameFile.Rd R.utils/man/resample.Rd R.utils/man/reset.ProgressBar.Rd R.utils/man/reset.SmartComments.Rd R.utils/man/reset.VComments.Rd R.utils/man/resetWarnings.Rd R.utils/man/ruler.Verbose.Rd R.utils/man/saveAnywhere.Settings.Rd R.utils/man/saveObject.Rd R.utils/man/seqToHumanReadable.Rd R.utils/man/seqToIntervals.Rd R.utils/man/setDefaultLevel.Verbose.Rd R.utils/man/setLabel.TextStatusBar.Rd R.utils/man/setLabels.TextStatusBar.Rd R.utils/man/setMaxValue.ProgressBar.Rd R.utils/man/setOption.Options.Rd R.utils/man/setOption.Rd R.utils/man/setProgress.ProgressBar.Rd R.utils/man/setStepLength.ProgressBar.Rd R.utils/man/setThreshold.Verbose.Rd R.utils/man/setTicks.ProgressBar.Rd R.utils/man/setTimestampFormat.Verbose.Rd R.utils/man/setValue.ProgressBar.Rd R.utils/man/shell.exec2.Rd R.utils/man/sourceDirectory.Rd R.utils/man/sourceTo.Rd R.utils/man/splitByPattern.Rd R.utils/man/stext.Rd R.utils/man/str.Options.Rd R.utils/man/str.Verbose.Rd R.utils/man/subplots.Rd R.utils/man/summary.Verbose.Rd R.utils/man/swapXY.density.Rd R.utils/man/systemR.Rd R.utils/man/tempvar.Rd R.utils/man/timestamp.Verbose.Rd R.utils/man/timestampOn.Verbose.Rd R.utils/man/tmpfile.Rd R.utils/man/toCamelCase.Rd R.utils/man/toUrl.Rd R.utils/man/touchFile.Rd R.utils/man/unwrap.array.Rd R.utils/man/update.FileProgressBar.Rd R.utils/man/update.ProgressBar.Rd R.utils/man/update.TextStatusBar.Rd R.utils/man/updateLabels.TextStatusBar.Rd R.utils/man/use.Rd R.utils/man/useRepos.Rd R.utils/man/validate.SmartComments.Rd R.utils/man/validate.VComments.Rd R.utils/man/warnings.Verbose.Rd R.utils/man/whichVector.logical.Rd R.utils/man/withCapture.Rd R.utils/man/withLocale.Rd R.utils/man/withOptions.Rd R.utils/man/withRepos.Rd R.utils/man/withSeed.Rd R.utils/man/withSink.Rd R.utils/man/withTimeout.Rd R.utils/man/wrap.array.Rd R.utils/man/writeBinFragments.Rd R.utils/man/writeByte.Java.Rd R.utils/man/writeDataFrame.data.frame.Rd R.utils/man/writeInt.Java.Rd R.utils/man/writeRaw.MultiVerbose.Rd R.utils/man/writeRaw.NullVerbose.Rd R.utils/man/writeRaw.Verbose.Rd R.utils/man/writeShort.Java.Rd R.utils/man/writeUTF.Java.Rd
+ chmod -x R.utils/R/000.R R.utils/R/006.fixVarArgs.R R.utils/R/999.NonDocumentedObjects.R R.utils/R/999.package.R R.utils/R/Arguments.R R.utils/R/Assert.R R.utils/R/CmdArgsFunction.R R.utils/R/FileListTree.R R.utils/R/FileProgressBar.R R.utils/R/GString-class.R R.utils/R/GenericSummary.R R.utils/R/Java.R R.utils/R/LComments.R R.utils/R/MultiVerbose.R R.utils/R/NullVerbose.R R.utils/R/Options.R R.utils/R/ProgressBar.R R.utils/R/Settings.R R.utils/R/SmartComments.R R.utils/R/Sys.readlink2.R R.utils/R/System.R R.utils/R/TextStatusBar.R R.utils/R/TimeoutException.R R.utils/R/VComments.R R.utils/R/Verbose.R R.utils/R/addFinalizerToLast.R R.utils/R/arrayIndex.R R.utils/R/attachLocally.R R.utils/R/callHooks.R R.utils/R/capitalize.R R.utils/R/captureOutput.R R.utils/R/cmdArgs.R R.utils/R/colClasses.R R.utils/R/commandArgs.R R.utils/R/compressFile.R R.utils/R/compressPDF.R R.utils/R/copyDirectory.R R.utils/R/copyFile.R R.utils/R/countLines.R R.utils/R/createFileAtomically.R R.utils/R/createLink.R R.utils/R/createWindowsShortcut.R R.utils/R/dataFrame.R R.utils/R/density.EXTS.R R.utils/R/detachPackage.R R.utils/R/detachPlain.R R.utils/R/dimNA.R R.utils/R/displayCode.R R.utils/R/doCall.R R.utils/R/downloadFile.R R.utils/R/eget.R R.utils/R/egsub.R R.utils/R/env.R R.utils/R/extract.array.R R.utils/R/fileAccess.R R.utils/R/filePath.R R.utils/R/finalizeSession.R R.utils/R/findFiles.R R.utils/R/findSourceTraceback.R R.utils/R/gcDLLs.R R.utils/R/gcat.R R.utils/R/getAbsolutePath.R R.utils/R/getCommonPrefix.R R.utils/R/getParent.R R.utils/R/getPathIfEmpty.R R.utils/R/getRelativePath.R R.utils/R/gstring.R R.utils/R/hasUrlProtocol.R R.utils/R/hpaste.R R.utils/R/hsize.R R.utils/R/inAnyInterval.R R.utils/R/insert.R R.utils/R/installPackages.R R.utils/R/intToHex.R R.utils/R/intervalsToSeq.R R.utils/R/isAbsolutePath.R R.utils/R/isDirectory.R R.utils/R/isEof.connection.R R.utils/R/isFile.R R.utils/R/isOpen.character.R R.utils/R/isPackageInstalled.R R.utils/R/isPackageLoaded.R R.utils/R/isReplicated.R R.utils/R/isSingle.R R.utils/R/isUrl.R R.utils/R/isZero.R R.utils/R/lastModified.R R.utils/R/listDirectory.R R.utils/R/loadObject.R R.utils/R/loadToEnv.R R.utils/R/mapToIntervals.R R.utils/R/mergeByCommonTails.R R.utils/R/mergeIntervals.R R.utils/R/mkdirs.R R.utils/R/mout.R R.utils/R/moveInSearchPath.R R.utils/R/mpager.R R.utils/R/nullfile.R R.utils/R/onGarbageCollect.R R.utils/R/onSessionExit.R R.utils/R/parseArgs.R R.utils/R/patchCode.R R.utils/R/popBackupFile.R R.utils/R/popTemporaryFile.R R.utils/R/printf.R R.utils/R/pushBackupFile.R R.utils/R/pushTemporaryFile.R R.utils/R/queryRCmdCheck.R R.utils/R/readBinFragments.R R.utils/R/readRdHelp.R R.utils/R/readTable.R R.utils/R/readTableIndex.R R.utils/R/readWindowsShellLink.R R.utils/R/readWindowsShortcut.R R.utils/R/reassignInPackage.R R.utils/R/removeDirectory.R R.utils/R/renameFile.R R.utils/R/resample.R R.utils/R/resetWarnings.R R.utils/R/saveObject.R R.utils/R/seqToHumanReadable.R R.utils/R/seqToIntervals.R R.utils/R/setOption.R R.utils/R/shell.exec2.R R.utils/R/sourceDirectory.R R.utils/R/sourceTo.R R.utils/R/splitByCommonTails.R R.utils/R/splitByPattern.R R.utils/R/stext.R R.utils/R/subplots.R R.utils/R/systemR.R R.utils/R/tempvar.R R.utils/R/tmpfile.R R.utils/R/toAsciiRegExprPattern.R R.utils/R/toCamelCase.R R.utils/R/toUrl.R R.utils/R/touchFile.R R.utils/R/unwrap.array.R R.utils/R/use.R R.utils/R/useRepos.R R.utils/R/whichVector.R R.utils/R/withCapture.R R.utils/R/withLocale.R R.utils/R/withOptions.R R.utils/R/withRepos.R R.utils/R/withSeed.R R.utils/R/withSink.R R.utils/R/withTimeout.R R.utils/R/wrap.array.R R.utils/R/writeBinFragments.R R.utils/R/writeDataFrame.R R.utils/R/zzz.R R.utils/R/beta/Options.ui.Rtodo R.utils/R/beta/singularPlural.Rtrial R.utils/R/devel/doCall.R R.utils/R/devel/fileSizeToHumanReadable.R R.utils/R/devel/splitUrl.R
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.WhmBRl
+ umask 022
+ cd /builddir/build/BUILD
+ cd R.utils
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.933LSB
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch
++ dirname /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch
+ cd R.utils
+ mkdir -p /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch/usr/share/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch/usr/share/R/library R.utils
* installing *source* package 'R.utils' ...
** package 'R.utils' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function warnings to warnings.default, which was defined in environment base.
** help
*** installing help indices
  converting help for package 'R.utils'
    finding HTML links ... done
    Arguments                               html  
    Assert                                  html  
    FileProgressBar                         html  
    GString-class                           html  
    Java                                    html  
    LComments                               html  
    MultiVerbose                            html  
    Non-documented_objects                  html  
    NullVerbose                             html  
    Options                                 html  
    ProgressBar                             html  
    R.utils-package                         html  
    Settings                                html  
    SmartComments                           html  
    Sys.readlink2                           html  
    System                                  html  
    TextStatusBar                           html  
    TimeoutException                        html  
    finding level-2 HTML links ... done
    VComments                               html  
    Verbose                                 html  
    addFinalizerToLast                      html  
    arrayIndex                              html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/arrayIndex.Rd:62: missing file link 'arrayInd'
    as.character.GString                    html  
    as.character.Options                    html  
    as.character.ProgressBar                html  
    as.character.Verbose                    html  
    as.character.binmode                    html  
    as.double.Verbose                       html  
    as.list.MultiVerbose                    html  
    as.list.Options                         html  
    as.logical.Verbose                      html  
    asByte.Java                             html  
    asInt.Java                              html  
    asLong.Java                             html  
    asShort.Java                            html  
    attachLocally.list                      html  
    callHooks                               html  
    callHooks.function                      html  
    capitalize                              html  
    capture.Verbose                         html  
    captureOutput                           html  
    cat.Verbose                             html  
    check.Assert                            html  
    cleanup.FileProgressBar                 html  
    cmdArgs                                 html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/cmdArgs.Rd:53: missing file link 'as.numeric'
    cmdArgsCall                             html  
    colClasses                              html  
    commandArgs                             html  
    compile.SmartComments                   html  
    compressFile                            html  
    compressPDF                             html  
    convertComment.SmartComments            html  
    convertComment.VComments                html  
    copyDirectory                           html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/copyDirectory.Rd:40: missing file link 'file.copy'
    copyFile                                html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/copyFile.Rd:40: missing file link 'file.copy'
    countLines                              html  
    createFileAtomically                    html  
    createLink                              html  
    createWindowsShortcut                   html  
    currentTimeMillis.System                html  
    dataFrame                               html  
    detachPackage                           html  
    dimNALT_-                               html  
    displayCode                             html  
    doCall                                  html  
    downloadFile.character                  html  
    draw.density                            html  
    eget                                    html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/eget.Rd:77: missing file link 'cmdArg'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/eget.Rd:78: missing file link 'mget'
    egsub                                   html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/egsub.Rd:25: missing file link 'gsub'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/egsub.Rd:27: missing file link 'gsub'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/egsub.Rd:29: missing file link 'gsub'
    enter.Verbose                           html  
    env                                     html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/env.Rd:24: missing file link 'evalq'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/env.Rd:26: missing file link 'new.env'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/env.Rd:59: missing file link 'new.env'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/env.Rd:59: missing file link 'evalq'
    equals.Options                          html  
    equals.Verbose                          html  
    evaluate.GString                        html  
    evaluate.Verbose                        html  
    exit.Verbose                            html  
    extract.array                           html  
    file.info2                              html  
    fileAccess                              html  
    filePath                                html  
    finalizeSession                         html  
    findFiles                               html  
    findGhostscript.System                  html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/findGhostscript.System.Rd:31: missing file link 'R_GSCMD'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/findGhostscript.System.Rd:34: missing file link 'R_GSCMD'
    findGraphicsDevice.System               html  
    findSettings.Settings                   html  
    findSourceTraceback                     html  
    flush.TextStatusBar                     html  
    gcDLLs                                  html  
    gcat                                    html  
    getAbsolutePath                         html  
    getBarString.ProgressBar                html  
    getBuiltinDate.GString                  html  
    getBuiltinDatetime.GString              html  
    getBuiltinHostname.GString              html  
    getBuiltinOs.GString                    html  
    getBuiltinPid.GString                   html  
    getBuiltinRhome.GString                 html  
    getBuiltinRversion.GString              html  
    getBuiltinTime.GString                  html  
    getBuiltinUsername.GString              html  
    getCharacters.Arguments                 html  
    getDoubles.Arguments                    html  
    getEnvironment.Arguments                html  
    getFilename.Arguments                   html  
    getHostname.System                      html  
    getIndices.Arguments                    html  
    getInstanceOf.Arguments                 html  
    getIntegers.Arguments                   html  
    getLabel.TextStatusBar                  html  
    getLeaves.Options                       html  
    getLoadedPathname.Settings              html  
    getLogicals.Arguments                   html  
    getMessage.TimeoutException             html  
    getNumerics.Arguments                   html  
    getOption.Options                       html  
    getParent                               html  
    getRaw.GString                          html  
    getReadablePathname.Arguments           html  
    getReadablePathnames.Arguments          html  
    getRegularExpression.Arguments          html  
    getRelativePath                         html  
    getThreshold.Verbose                    html  
    getTimestampFormat.Verbose              html  
    getUsername.System                      html  
    getVariableValue.GString                html  
    getVector.Arguments                     html  
    getVerbose.Arguments                    html  
    getWritablePathname.Arguments           html  
    gstring                                 html  
    hasOption.Options                       html  
    hasUrlProtocol                          html  
    header.Verbose                          html  
    hpaste                                  html  
    hsize                                   html  
    inAnyInterval.numeric                   html  
    increase.ProgressBar                    html  
    inherits.Assert                         html  
    insert                                  html  
    installPackages                         html  
    intToBin                                html  
    intervalsToSeq.matrix                   html  
    isAbsolutePath                          html  
    isDirectory                             html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/isDirectory.Rd:43: missing file link 'file_test'
    isDone.ProgressBar                      html  
    isEof.connection                        html  
    isFile                                  html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/isFile.Rd:43: missing file link 'file_test'
    isMatrix.Assert                         html  
    isModified.Settings                     html  
    isOn.NullVerbose                        html  
    isOn.Verbose                            html  
    isOpen.character                        html  
    isPackageInstalled                      html  
    isPackageLoaded                         html  
    isReplicated                            html  
    isScalar.Assert                         html  
    isSingle                                html  
    isUrl                                   html  
    isVector.Assert                         html  
    isVisible.NullVerbose                   html  
    isVisible.Verbose                       html  
    isZero                                  html  
    lastModified                            html  
    less.Verbose                            html  
    listDirectory                           html  
    loadAnywhere.Settings                   html  
    loadObject                              html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/loadObject.Rd:47: missing file link 'saveRDS'
    loadToEnv                               html  
    mapToIntervals.numeric                  html  
    mergeIntervals.numeric                  html  
    mkdirs                                  html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/mkdirs.Rd:41: missing file link 'dir.create'
    more.Verbose                            html  
    mout                                    html  
    moveInSearchPath                        html  
    mpager                                  html  
    names.Options                           html  
    nbrOfOptions.Options                    html  
    newline.TextStatusBar                   html  
    newline.Verbose                         html  
    nullfile                                html  
    off.Verbose                             html  
    on.Verbose                              html  
    onGarbageCollect                        html  
    onSessionExit                           html  
    openBrowser.System                      html  
    parse.GString                           html  
    parse.SmartComments                     html  
    parseDebian.System                      html  
    patchCode                               html  
    popBackupFile                           html  
    popMessage.TextStatusBar                html  
    popTemporaryFile                        html  
    print.GString                           html  
    print.Verbose                           html  
    printf                                  html  
    printf.Verbose                          html  
    promptAndSave.Settings                  html  
    pushBackupFile                          html  
    pushState.Verbose                       html  
    pushTemporaryFile                       html  
    queryRCmdCheck                          html  
    readBinFragments                        html  
    readByte.Java                           html  
    readInt.Java                            html  
    readRdHelp                              html  
    readShort.Java                          html  
    readTable                               html  
    readTableIndex                          html  
    readUTF.Java                            html  
    readWindowsShellLink                    html  
    readWindowsShortcut                     html  
    reassignInPackage                       html  
    removeDirectory                         html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/removeDirectory.Rd:40: missing file link 'file.remove'
    renameFile                              html  
    resample                                html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/resample.Rd:29: missing file link 'sample.int'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/resample.Rd:39: missing file link 'sample.int'
    reset.ProgressBar                       html  
    reset.SmartComments                     html  
    reset.VComments                         html  
    resetWarnings                           html  
    ruler.Verbose                           html  
    saveAnywhere.Settings                   html  
    saveObject                              html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/saveObject.Rd:46: missing file link 'saveRDS'
    seqToHumanReadable                      html  
    seqToIntervals                          html  
    setDefaultLevel.Verbose                 html  
    setLabel.TextStatusBar                  html  
    setLabels.TextStatusBar                 html  
    setMaxValue.ProgressBar                 html  
    setOption.Options                       html  
    setOption                               html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/setOption.Rd:36: missing file link 'getOption'
    setProgress.ProgressBar                 html  
    setStepLength.ProgressBar               html  
    setThreshold.Verbose                    html  
    setTicks.ProgressBar                    html  
    setTimestampFormat.Verbose              html  
    setValue.ProgressBar                    html  
    shell.exec2                             html  
    sourceDirectory                         html  
    sourceTo                                html  
    splitByPattern                          html  
    stext                                   html  
    str.Options                             html  
    str.Verbose                             html  
    subplots                                html  
    summary.Verbose                         html  
    swapXY.density                          html  
    systemR                                 html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/systemR.Rd:52: missing file link 'R.home'
    tempvar                                 html  
    timestamp.Verbose                       html  
    timestampOn.Verbose                     html  
    tmpfile                                 html  
    toCamelCase                             html  
    toUrl                                   html  
    touchFile                               html  
    unwrap.array                            html  
    update.FileProgressBar                  html  
    update.ProgressBar                      html  
    update.TextStatusBar                    html  
    updateLabels.TextStatusBar              html  
    use                                     html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/use.Rd:38: missing file link 'require'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/use.Rd:38: missing file link 'requireNamespace'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/use.Rd:44: missing file link 'package_version'
    useRepos                                html  
    validate.SmartComments                  html  
    validate.VComments                      html  
    warnings.Verbose                        html  
    whichVector.logical                     html  
    withCapture                             html  
    withLocale                              html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/withLocale.Rd:57: missing file link 'Sys.setlocale'
    withOptions                             html  
    withRepos                               html  
    withSeed                                html  
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/withSeed.Rd:25: missing file link 'set.seed'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/withSeed.Rd:37: missing file link '.Random.seed'
Rd warning: /builddir/build/BUILD/R.utils/R.utils/man/withSeed.Rd:66: missing file link 'set.seed'
    withSink                                html  
    withTimeout                             html  
    wrap.array                              html  
    writeBinFragments                       html  
    writeByte.Java                          html  
    writeDataFrame.data.frame               html  
    writeInt.Java                           html  
    writeRaw.MultiVerbose                   html  
    writeRaw.NullVerbose                    html  
    writeRaw.Verbose                        html  
    writeShort.Java                         html  
    writeUTF.Java                           html  
** building package indices
** testing if installed package can be loaded
* DONE (R.utils)
+ test -d R.utils/src
+ rm -f /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch/usr/share/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 2.6.0-1.fc28 --unique-debug-suffix -2.6.0-1.fc28.noarch --unique-debug-src-base R-R.utils-2.6.0-1.fc28.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R.utils
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs '' ''
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Rtu6Id
+ umask 022
+ cd /builddir/build/BUILD
+ cd R.utils
+ /usr/bin/R CMD check R.utils
* using log directory '/builddir/build/BUILD/R.utils/R.utils.Rcheck'
* using R version 3.4.3 (2017-11-30)
* using platform: x86_64-redhat-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'R.utils/DESCRIPTION' ... OK
* this is package 'R.utils' version '2.6.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.6/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.6/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.6/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.6/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.6/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'R.utils' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... WARNING
Error: package 'R.oo' required by 'R.utils' could not be found
Execution halted
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'Arguments-FILES.R'
  Running 'FileProgressBar.R'
  Running 'GString.R'
  Running 'Java.R'
  Running 'MultiVerbose.R'
  Running 'NullVerbose.R'
  Running 'Options.R'
  Running 'ProgressBar.R'
  Running 'Settings.R'
  Running 'System.R'
  Running 'TextStatusBar.R'
  Running 'VComments.R'
  Running 'Verbose.R'
  Running 'absolute-relative-paths.R'
  Running 'arrayIndex.R'
  Running 'attachLocally.R'
  Running 'callHooks.R'
  Running 'capitalize.R'
  Running 'captureOutput.R'
  Running 'cmdArgs.R'
  Running 'colClasses.R'
  Running 'commandArgs.R'
  Running 'compressFile.R'
  Running 'compressPDF.R'
  Running 'copyRenameFile.R'
  Running 'countLines.R'
  Running 'cout.R'
  Running 'createFileAtomically.R'
  Running 'createLink.R'
  Running 'dataFrame.R'
  Running 'dimNA.R'
  Running 'displayCode.R'
  Running 'doCall.R'
  Running 'eget.R'
  Running 'egsub.R'
  Running 'env.R'
  Running 'extract.array.R'
  Running 'fileAccess.R'
  Running 'filePath.R'
  Running 'findFiles.R'
  Running 'findSourceTraceback.R'
  Running 'gcDLLs.R'
  Running 'gcat.R'
  Running 'getOption.R'
  Running 'getParent.R'
  Running 'hpaste.R'
  Running 'insert.R'
  Running 'intToHex.R'
  Running 'isPackageLoaded.R'
  Running 'isReplicated.R'
  Running 'isUrl.R'
  Running 'isZero.R'
  Running 'listDirectory.R'
  Running 'loadObject.R'
  Running 'loadToEnv.R'
  Running 'mkdirs.R'
  Running 'mout.R'
  Running 'mpager.R'
  Running 'nullfile.R'
  Running 'parseRepos.R'
  Running 'pushBackupFile.R'
  Running 'pushTemporaryFile.R'
  Running 'queryRCmdCheck.R'
  Running 'readBinFragments.R'
  Running 'readWindowsShellLink.R'
  Running 'readWindowsShortcut.R'
  Running 'resample.R'
  Running 'seqToHumanReadable.R'
  Running 'seqToIntervals.R'
  Running 'sourceTo.R'
  Running 'splitByPattern.R'
  Running 'subplots.R'
  Running 'symlinks,dirs.R'
  Running 'symlinks,files.R'
  Running 'systemR.R'
  Running 'tempvar.R'
  Running 'tmpfile.R'
  Running 'toCamelCase.R'
  Running 'touchFile.R'
  Running 'use.R'
  Running 'useRepos.R'
  Running 'whichVector.R'
  Running 'withCapture.R'
  Running 'withLocale.R'
  Running 'withOptions.R'
  Running 'withRepos.R'
  Running 'withSeed.R'
  Running 'withSink.R'
  Running 'withTimeout.R'
  Running 'wrap.array.R'
  Running 'writeDataFrame.R'
  Running 'zzz_finalizer_crash.R'
 OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
  '/builddir/build/BUILD/R.utils/R.utils.Rcheck/00check.log'
for details.
+ exit 0
Processing files: R-R.utils-2.6.0-1.fc28.noarch
Provides: R-R.utils = 2.6.0-1.fc28
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Suggests: R-digest
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch
Wrote: /builddir/build/RPMS/R-R.utils-2.6.0-1.fc28.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.xfIIK2
+ umask 022
+ cd /builddir/build/BUILD
+ cd R.utils
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-R.utils-2.6.0-1.fc28.noarch
+ exit 0
Child return code was: 0