Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsedml.spec'], chrootPath='/var/lib/mock/f25-build-10229980-800332/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsedml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False sh: perl: command not found sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/libsedml-0.4.3-4.fc25.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsedml.spec'], chrootPath='/var/lib/mock/f25-build-10229980-800332/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsedml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Jrf31g + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSEDML-0.4.3 + /usr/bin/gzip -dc /builddir/build/SOURCES/libSEDML-0.4.3.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd libSEDML-0.4.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (libsedml-fix_install_libpaths.patch): + echo 'Patch #0 (libsedml-fix_install_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 766 (offset 54 lines). patching file bindings/ruby/CMakeLists.txt Hunk #1 succeeded at 130 (offset 14 lines). patching file bindings/csharp/CMakeLists.txt Hunk #1 succeeded at 132 (offset 6 lines). patching file bindings/perl/CMakeLists.txt Hunk #1 succeeded at 117 (offset 4 lines). patching file bindings/java/CMakeLists.txt Hunk #1 succeeded at 93 (offset 9 lines). patching file bindings/r/CMakeLists.txt Hunk #1 succeeded at 222 (offset 14 lines). + sed -e 's| lib/cmake | lib64/cmake |g' -i CMakeLists.txt + sed -e 's| /usr/lib/cmake | /usr/lib64/cmake |g' -i CMakeModules/FindLIBNUML.cmake + sed -e 's| /usr/lib/cmake | /usr/lib64/cmake |g' -i CMakeModules/FindLIBSBML.cmake + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.7CiyR7 + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + mkdir build2 ~/build/BUILD/libSEDML-0.4.3/build2 ~/build/BUILD/libSEDML-0.4.3 + pushd build2 + export 'LDFLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread' + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread' ++ echo '-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' ++ sed -e s/-Werror=format-security/-Wno-error=unused-value/g + SEDMLOPT_FLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + export 'CFLAGS=-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CXXFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DWITH_PYTHON:BOOL=ON -DWITH_SWIG:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.5m -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.5m.so -DWITH_JAVA:BOOL=OFF -DWITH_SWIG:BOOL=OFF -DWITH_PERL:BOOL=OFF -DWITH_RUBY:BOOL=OFF -DWITH_R:BOOL=OFF -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CSHARP:BOOL=OFF -DWITH_SWIG:BOOL=OFF -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_CHECK:BOOL=ON -DWITH_EXAMPLES:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=/usr/lib64/libsbml.so -DLIBSBML_INCLUDE_DIR:PATH=/usr/include -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DLIBSEDML_SHARED_VERSION:BOOL=ON '-DEXTRA_LIBS:STRING=numl;sbml;xml2;bz2;z;m;dl' -DLIBSBML_STATIC:BOOL=OFF -DCMAKE_CXX_FLAGS_RELEASE:STRING=-I/usr/include/libxml2 -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DWITH_ZLIB:BOOL=ON -DWITH_CPP_NAMESPACE:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES .. -- The C compiler identification is GNU 6.4.1 -- The CXX compiler identification is GNU 6.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Looking for sbml-static -- Found LIBSBML: sbml-static -- Looking for numl-static -- Found LIBNUML: numl-static -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found SWIG: /usr/bin/swig (found version "3.0.11") -- Found PythonInterp: /usr/bin/python3 (found version "3.5.4") -- Found PythonLibs: /usr/lib64/libpython3.5m.so (found version "3.5.4") -- ---------------------------------------------------------------------- libSEDML version 0.4.3 ---------------------------------------------------------------------- More information and the latest version are available online at https://github.com/fbergmann/libSEDML/ Please report problems using the issue tracker at https://github.com/fbergmann/libSEDML/issues To contact the developers directly, email fbergman@caltech.edu Configured on host 'unknown' host type = Linux host operating system = Linux 4.12.9-300.fc26.x86_64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX -DPACKAGE_VERSION="0.4.3" -DPACKAGE_NAME="libsedml" CFLAGS = -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread SBML library configuration: SBML library = /usr/lib64/libsbml.so SBML include = -I/usr/include NUML library configuration: NUML library = /lib64/libnuml.so NUML include = -I/usr/include Other libSEDML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using Python = /usr/bin/python3 -- Using libcheck = /usr/lib64/libcheck.so -- -- Using C++ namespace for libSEDML (libsedml) = no -- ---------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH CSHARP_COMPILER INCLUDE_INSTALL_DIR LIBSBML_STATIC LIB_INSTALL_DIR LIB_SUFFIX R_INCLUDE_DIRS SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSEDML-0.4.3/build2 + make -j6 /usr/bin/cmake -H/builddir/build/BUILD/libSEDML-0.4.3 -B/builddir/build/BUILD/libSEDML-0.4.3/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build2/CMakeFiles /builddir/build/BUILD/libSEDML-0.4.3/build2/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/depend make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/depend make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/CMakeFiles/sedml-static.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/CMakeFiles/sedml.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 1%] Swig Python source cd /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python -I/usr/include/ -I/usr/include/ -c++ -python -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/libsedml.i Scanning dependencies of target sedml-static make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' Scanning dependencies of target sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/build [ 4%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o [ 4%] Building CXX object sedml/CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o [ 3%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAddXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithmParameter.cpp cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/common/libsedml-version.cpp [ 5%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAlgorithm.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAddXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAddXML.cpp cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAlgorithm.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithm.cpp make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 6%] Building CXX object sedml/CMakeFiles/sedml.dir/common/libsedml-version.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/common/libsedml-version.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/common/libsedml-version.cpp [ 6%] Building CXX object sedml/CMakeFiles/sedml.dir/SedAddXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAddXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAddXML.cpp [ 7%] Building CXX object sedml/CMakeFiles/sedml.dir/SedAlgorithm.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAlgorithm.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithm.cpp [ 8%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedBase.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedBase.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp [ 9%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChange.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. [ 9%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeAttribute.cpp [ 10%] Building CXX object sedml/CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithmParameter.cpp [ 11%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeXML.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp: In member function 'bool SedBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp:1985:8: warning: variable 'sedmlDeclared' set but not used [-Wunused-but-set-variable] bool sedmlDeclared = false; ^~~~~~~~~~~~~ [ 12%] Building CXX object sedml/CMakeFiles/sedml.dir/SedBase.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedBase.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp [ 13%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChange.cpp [ 14%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeAttribute.cpp [ 15%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedComputeChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedComputeChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedComputeChange.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp: In member function 'bool SedBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp:1985:8: warning: variable 'sedmlDeclared' set but not used [-Wunused-but-set-variable] bool sedmlDeclared = false; ^~~~~~~~~~~~~ [ 16%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedConstructorException.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedConstructorException.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedConstructorException.cpp [ 17%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedCurve.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedCurve.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedCurve.cpp [ 18%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChangeXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChangeXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeXML.cpp [ 19%] Building CXX object sedml/CMakeFiles/sedml.dir/SedComputeChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedComputeChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedComputeChange.cpp [ 20%] Building CXX object sedml/CMakeFiles/sedml.dir/SedConstructorException.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedConstructorException.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedConstructorException.cpp [ 21%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataDescription.cpp [ 22%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataGenerator.cpp [ 23%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataSet.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataSet.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSet.cpp [ 23%] Building CXX object sedml/CMakeFiles/sedml.dir/SedCurve.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedCurve.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedCurve.cpp [ 24%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataDescription.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataDescription.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataDescription.cpp [ 25%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataGenerator.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataGenerator.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataGenerator.cpp [ 26%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataSet.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataSet.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSet.cpp [ 27%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataSource.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataSource.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSource.cpp [ 27%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDocument.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDocument.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp [ 28%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedError.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedError.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedError.cpp [ 29%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedErrorLog.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp: In member function 'virtual void SedDocument::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp:1330:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 30%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedFunctionalRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedFunctionalRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedFunctionalRange.cpp [ 31%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataSource.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataSource.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSource.cpp [ 32%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedListOf.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedListOf.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedListOf.cpp [ 33%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDocument.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDocument.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp [ 34%] Building CXX object sedml/CMakeFiles/sedml.dir/SedError.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedError.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedError.cpp [ 35%] Building CXX object sedml/CMakeFiles/sedml.dir/SedErrorLog.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedErrorLog.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedErrorLog.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp: In member function 'virtual void SedDocument::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp:1330:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 35%] Building CXX object sedml/CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedFunctionalRange.cpp [ 36%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedModel.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedModel.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedModel.cpp [ 37%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedNamespaces.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedNamespaces.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedNamespaces.cpp [ 38%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedOneStep.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedOneStep.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOneStep.cpp [ 38%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedOutput.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedOutput.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOutput.cpp [ 39%] Building CXX object sedml/CMakeFiles/sedml.dir/SedListOf.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedListOf.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedListOf.cpp [ 40%] Building CXX object sedml/CMakeFiles/sedml.dir/SedModel.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedModel.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedModel.cpp [ 41%] Building CXX object sedml/CMakeFiles/sedml.dir/SedNamespaces.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedNamespaces.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedNamespaces.cpp [ 42%] Building CXX object sedml/CMakeFiles/sedml.dir/SedOneStep.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedOneStep.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOneStep.cpp [ 43%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedParameter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedParameter.cpp [ 44%] Building CXX object sedml/CMakeFiles/sedml.dir/SedOutput.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedOutput.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOutput.cpp [ 45%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedPlot2D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedPlot2D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp [ 46%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedPlot3D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedPlot3D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot3D.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp: In member function 'virtual void SedPlot2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp:514:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 47%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRange.cpp [ 48%] Building CXX object sedml/CMakeFiles/sedml.dir/SedParameter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedParameter.cpp [ 49%] Building CXX object sedml/CMakeFiles/sedml.dir/SedPlot2D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedPlot2D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp [ 50%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedReader.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedReader.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReader.cpp [ 51%] Building CXX object sedml/CMakeFiles/sedml.dir/SedPlot3D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedPlot3D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot3D.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp: In member function 'virtual void SedPlot2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp:514:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 52%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedRemoveXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRemoveXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRemoveXML.cpp [ 52%] Building CXX object sedml/CMakeFiles/sedml.dir/SedRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRange.cpp [ 53%] Building CXX object sedml/CMakeFiles/sedml.dir/SedReader.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedReader.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReader.cpp [ 54%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedRepeatedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRepeatedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRepeatedTask.cpp [ 55%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedReport.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedReport.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReport.cpp [ 56%] Building CXX object sedml/CMakeFiles/sedml.dir/SedRemoveXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRemoveXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRemoveXML.cpp [ 56%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSetValue.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSetValue.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSetValue.cpp [ 57%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSimulation.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSimulation.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSimulation.cpp [ 58%] Building CXX object sedml/CMakeFiles/sedml.dir/SedRepeatedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRepeatedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRepeatedTask.cpp [ 59%] Building CXX object sedml/CMakeFiles/sedml.dir/SedReport.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedReport.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReport.cpp [ 60%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSlice.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSlice.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp: In member function 'virtual SedBase* SedSlice::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp:262:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 61%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSteadyState.cpp [ 62%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSetValue.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSetValue.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSetValue.cpp [ 63%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSimulation.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSimulation.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSimulation.cpp [ 64%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSubTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSubTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSubTask.cpp [ 65%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSlice.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSlice.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp [ 66%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSurface.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSurface.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSurface.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp: In member function 'virtual SedBase* SedSlice::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp:262:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 67%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp [ 68%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedTypeCodes.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedTypeCodes.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTypeCodes.cpp cd /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python" -DVERSION="0.4.3" -P /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/add_version.cmake Python: Add Version to generated file make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 68%] Built target binding_python_swig [ 69%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedUniformRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedUniformRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformRange.cpp [ 69%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedUniformTimeCourse.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedUniformTimeCourse.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformTimeCourse.cpp [ 70%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedVariable.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVariable.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVariable.cpp [ 71%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSteadyState.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSteadyState.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSteadyState.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp: In member function 'virtual SedBase* SedTask::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp:376:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 71%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSubTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSubTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSubTask.cpp [ 72%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSurface.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSurface.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSurface.cpp [ 73%] Building CXX object sedml/CMakeFiles/sedml.dir/SedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp [ 74%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedVectorRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVectorRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVectorRange.cpp [ 75%] Building CXX object sedml/CMakeFiles/sedml.dir/SedTypeCodes.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedTypeCodes.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTypeCodes.cpp [ 76%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedVisitor.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVisitor.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVisitor.cpp [ 77%] Building CXX object sedml/CMakeFiles/sedml.dir/SedUniformRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedUniformRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformRange.cpp [ 78%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedWriter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedWriter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedWriter.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp: In member function 'virtual SedBase* SedTask::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp:376:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 79%] Building CXX object sedml/CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformTimeCourse.cpp [ 80%] Building CXX object sedml/CMakeFiles/sedml.dir/SedVariable.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVariable.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVariable.cpp [ 81%] Building CXX object sedml/CMakeFiles/sedml.dir/SedVectorRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVectorRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVectorRange.cpp [ 81%] Building CXX object sedml/CMakeFiles/sedml.dir/SedVisitor.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVisitor.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVisitor.cpp [ 82%] Building CXX object sedml/CMakeFiles/sedml.dir/SedWriter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedWriter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedWriter.cpp [ 83%] Linking CXX static library libsedml-static.a cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/cmake -P CMakeFiles/sedml-static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/cmake -E cmake_link_script CMakeFiles/sedml-static.dir/link.txt --verbose=1 /usr/bin/ar qc libsedml-static.a CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o CMakeFiles/sedml-static.dir/SedAddXML.cpp.o CMakeFiles/sedml-static.dir/SedAlgorithm.cpp.o CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o CMakeFiles/sedml-static.dir/SedBase.cpp.o CMakeFiles/sedml-static.dir/SedChange.cpp.o CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o CMakeFiles/sedml-static.dir/SedComputeChange.cpp.o CMakeFiles/sedml-static.dir/SedConstructorException.cpp.o CMakeFiles/sedml-static.dir/SedCurve.cpp.o CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o CMakeFiles/sedml-static.dir/SedDataSet.cpp.o CMakeFiles/sedml-static.dir/SedDataSource.cpp.o CMakeFiles/sedml-static.dir/SedDocument.cpp.o CMakeFiles/sedml-static.dir/SedError.cpp.o CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o CMakeFiles/sedml-static.dir/SedFunctionalRange.cpp.o CMakeFiles/sedml-static.dir/SedListOf.cpp.o CMakeFiles/sedml-static.dir/SedModel.cpp.o CMakeFiles/sedml-static.dir/SedNamespaces.cpp.o CMakeFiles/sedml-static.dir/SedOneStep.cpp.o CMakeFiles/sedml-static.dir/SedOutput.cpp.o CMakeFiles/sedml-static.dir/SedParameter.cpp.o CMakeFiles/sedml-static.dir/SedPlot2D.cpp.o CMakeFiles/sedml-static.dir/SedPlot3D.cpp.o CMakeFiles/sedml-static.dir/SedRange.cpp.o CMakeFiles/sedml-static.dir/SedReader.cpp.o CMakeFiles/sedml-static.dir/SedRemoveXML.cpp.o CMakeFiles/sedml-static.dir/SedRepeatedTask.cpp.o CMakeFiles/sedml-static.dir/SedReport.cpp.o CMakeFiles/sedml-static.dir/SedSetValue.cpp.o CMakeFiles/sedml-static.dir/SedSimulation.cpp.o CMakeFiles/sedml-static.dir/SedSlice.cpp.o CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o CMakeFiles/sedml-static.dir/SedSubTask.cpp.o CMakeFiles/sedml-static.dir/SedSurface.cpp.o CMakeFiles/sedml-static.dir/SedTask.cpp.o CMakeFiles/sedml-static.dir/SedTypeCodes.cpp.o CMakeFiles/sedml-static.dir/SedUniformRange.cpp.o CMakeFiles/sedml-static.dir/SedUniformTimeCourse.cpp.o CMakeFiles/sedml-static.dir/SedVariable.cpp.o CMakeFiles/sedml-static.dir/SedVectorRange.cpp.o CMakeFiles/sedml-static.dir/SedVisitor.cpp.o CMakeFiles/sedml-static.dir/SedWriter.cpp.o /usr/bin/ranlib libsedml-static.a make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 83%] Built target sedml-static make -f bindings/python/CMakeFiles/binding_python_lib.dir/build.make bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_lib make[2]: Leaving directory 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python/libsedml_wrap.cpp make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/CMakeFiles/example_c_echo_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_c_echo_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 85%] Building C object examples/c/CMakeFiles/example_c_echo_sedml.dir/echo_sedml.c.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c && /usr/bin/cc -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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/builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/CMakeFiles/example_c_create_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_c_print_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c/CMakeFiles/example_c_print_sedml.dir/build.make examples/c/CMakeFiles/example_c_print_sedml.dir/build [ 86%] Linking CXX executable echo_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_c_echo_sedml.dir/link.txt --verbose=1 make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' Scanning dependencies of target example_c_create_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 86%] Building C object examples/c/CMakeFiles/example_c_print_sedml.dir/print_sedml.c.o make -f examples/c/CMakeFiles/example_c_create_sedml.dir/build.make examples/c/CMakeFiles/example_c_create_sedml.dir/build /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_c_echo_sedml.dir/echo_sedml.c.o -o echo_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c && /usr/bin/cc -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/example_c_print_sedml.dir/print_sedml.c.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c/print_sedml.c make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 87%] Building C object examples/c/CMakeFiles/example_c_create_sedml.dir/create_sedml.c.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c && /usr/bin/cc -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/example_c_create_sedml.dir/create_sedml.c.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c/create_sedml.c make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/DependInfo.cmake --color= [ 88%] Linking CXX executable create_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_c_create_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_c_create_sedml.dir/create_sedml.c.o -o create_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl Scanning dependencies of target example_cpp_echo_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 89%] Building CXX object examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/echo_sedml.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++ -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/example_cpp_echo_sedml.dir/echo_sedml.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c++/echo_sedml.cpp [ 90%] Linking CXX executable print_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_c_print_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_c_print_sedml.dir/print_sedml.c.o -o print_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 90%] Built target example_c_echo_sedml make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/CMakeFiles/example_cpp_print_sedml.dir/DependInfo.cmake --color= [ 91%] Linking CXX shared library libsedml.so cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/cmake -E cmake_link_script CMakeFiles/sedml.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,libsedml.so.0 -o libsedml.so.0.4.3 CMakeFiles/sedml.dir/common/libsedml-version.cpp.o CMakeFiles/sedml.dir/SedAddXML.cpp.o CMakeFiles/sedml.dir/SedAlgorithm.cpp.o CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o CMakeFiles/sedml.dir/SedBase.cpp.o CMakeFiles/sedml.dir/SedChange.cpp.o CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o CMakeFiles/sedml.dir/SedChangeXML.cpp.o CMakeFiles/sedml.dir/SedComputeChange.cpp.o CMakeFiles/sedml.dir/SedConstructorException.cpp.o CMakeFiles/sedml.dir/SedCurve.cpp.o CMakeFiles/sedml.dir/SedDataDescription.cpp.o CMakeFiles/sedml.dir/SedDataGenerator.cpp.o CMakeFiles/sedml.dir/SedDataSet.cpp.o CMakeFiles/sedml.dir/SedDataSource.cpp.o CMakeFiles/sedml.dir/SedDocument.cpp.o CMakeFiles/sedml.dir/SedError.cpp.o CMakeFiles/sedml.dir/SedErrorLog.cpp.o CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o CMakeFiles/sedml.dir/SedListOf.cpp.o CMakeFiles/sedml.dir/SedModel.cpp.o CMakeFiles/sedml.dir/SedNamespaces.cpp.o CMakeFiles/sedml.dir/SedOneStep.cpp.o CMakeFiles/sedml.dir/SedOutput.cpp.o CMakeFiles/sedml.dir/SedParameter.cpp.o CMakeFiles/sedml.dir/SedPlot2D.cpp.o CMakeFiles/sedml.dir/SedPlot3D.cpp.o CMakeFiles/sedml.dir/SedRange.cpp.o CMakeFiles/sedml.dir/SedReader.cpp.o CMakeFiles/sedml.dir/SedRemoveXML.cpp.o CMakeFiles/sedml.dir/SedRepeatedTask.cpp.o CMakeFiles/sedml.dir/SedReport.cpp.o CMakeFiles/sedml.dir/SedSetValue.cpp.o CMakeFiles/sedml.dir/SedSimulation.cpp.o CMakeFiles/sedml.dir/SedSlice.cpp.o CMakeFiles/sedml.dir/SedSteadyState.cpp.o CMakeFiles/sedml.dir/SedSubTask.cpp.o CMakeFiles/sedml.dir/SedSurface.cpp.o CMakeFiles/sedml.dir/SedTask.cpp.o CMakeFiles/sedml.dir/SedTypeCodes.cpp.o CMakeFiles/sedml.dir/SedUniformRange.cpp.o CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o CMakeFiles/sedml.dir/SedVariable.cpp.o CMakeFiles/sedml.dir/SedVectorRange.cpp.o CMakeFiles/sedml.dir/SedVisitor.cpp.o CMakeFiles/sedml.dir/SedWriter.cpp.o /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl Scanning dependencies of target example_cpp_print_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 92%] Building CXX object examples/c++/CMakeFiles/example_cpp_print_sedml.dir/print_sedml.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++ -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/example_cpp_print_sedml.dir/print_sedml.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c++/print_sedml.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 92%] Built target example_c_create_sedml make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/CMakeFiles/example_cpp_create_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_cpp_create_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 93%] Building CXX object examples/c++/CMakeFiles/example_cpp_create_sedml.dir/create_sedml.cpp.o [ 93%] Built target example_c_print_sedml make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/depend cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++ -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/example_cpp_create_sedml.dir/create_sedml.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c++/create_sedml.cpp make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/tests /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/tests /builddir/build/BUILD/libSEDML-0.4.3/build2/tests/CMakeFiles/test_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target test_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 94%] Building CXX object tests/CMakeFiles/test_sedml.dir/TestIssues.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/tests && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/common -I/builddir/build/BUILD/libSEDML-0.4.3/build2 -I/builddir/build/BUILD/libSEDML-0.4.3/tests/.. -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/test_sedml.dir/TestIssues.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/tests/TestIssues.cpp cd /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml && /usr/bin/cmake -E cmake_symlink_library libsedml.so.0.4.3 libsedml.so.0 libsedml.so make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 94%] Built target sedml [ 95%] Building CXX object tests/CMakeFiles/test_sedml.dir/TestRunner.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build2/tests && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/common -I/builddir/build/BUILD/libSEDML-0.4.3/build2 -I/builddir/build/BUILD/libSEDML-0.4.3/tests/.. -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/test_sedml.dir/TestRunner.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/tests/TestRunner.cpp [ 96%] Linking CXX executable echo_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_cpp_echo_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_cpp_echo_sedml.dir/echo_sedml.cpp.o -o echo_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 96%] Built target example_cpp_echo_sedml [ 97%] Linking CXX executable test_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/test_sedml.dir/TestIssues.cpp.o CMakeFiles/test_sedml.dir/TestRunner.cpp.o -o test_sedml ../sedml/libsedml-static.a -lcheck -lsbml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl [ 98%] Linking CXX executable print_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_cpp_print_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_cpp_print_sedml.dir/print_sedml.cpp.o -o print_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 98%] Built target test_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 98%] Built target example_cpp_print_sedml [ 99%] Linking CXX executable create_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_cpp_create_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_cpp_create_sedml.dir/create_sedml.cpp.o -o create_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 99%] Built target example_cpp_create_sedml [100%] Linking CXX shared library _libsedml.so cd /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,_libsedml.so -o _libsedml.so CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o ../../sedml/libsedml-static.a -lpython3.5m /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [100%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build2/CMakeFiles 0 + popd ~/build/BUILD/libSEDML-0.4.3 + mkdir build ~/build/BUILD/libSEDML-0.4.3/build ~/build/BUILD/libSEDML-0.4.3 + pushd build + export 'LDFLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread' + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread' ++ echo '-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' ++ sed -e s/-Werror=format-security/-Wno-error=unused-value/g + SEDMLOPT_FLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic' + export 'CFLAGS=-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CXXFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + CFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DWITH_PYTHON:BOOL=ON -DWITH_SWIG:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython2.7.so -DWITH_JAVA:BOOL=ON -DWITH_SWIG:BOOL=ON -DWITH_PERL:BOOL=ON -DWITH_RUBY:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CSHARP:BOOL=ON -DWITH_SWIG:BOOL=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_CHECK:BOOL=ON -DWITH_EXAMPLES:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=/usr/lib64/libsbml.so -DLIBSBML_INCLUDE_DIR:PATH=/usr/include -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DLIBSEDML_SHARED_VERSION:BOOL=ON '-DEXTRA_LIBS:STRING=numl;sbml;xml2;bz2;z;m;dl' -DLIBSBML_STATIC:BOOL=OFF -DCMAKE_CXX_FLAGS_RELEASE:STRING=-I/usr/include/libxml2 -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DWITH_ZLIB:BOOL=ON -DWITH_CPP_NAMESPACE:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES .. -- The C compiler identification is GNU 6.4.1 -- The CXX compiler identification is GNU 6.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Looking for sbml-static -- Found LIBSBML: sbml-static -- Looking for numl-static -- Found LIBNUML: numl-static -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found SWIG: /usr/bin/swig (found version "3.0.11") -- Found JNI: /usr/lib/jvm/jre/lib/amd64/libjawt.so -- Found Java: /usr/bin/java (found version "1.8.0.144") found components: Development -- Found PythonInterp: /usr/bin/python2 (found version "2.7.13") -- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.13") -- Found Perl: /usr/bin/perl (found version "5.24.3") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.24.3") -- Found Ruby: /usr/bin/ruby (found version "2.3.0") -- ---------------------------------------------------------------------- libSEDML version 0.4.3 ---------------------------------------------------------------------- More information and the latest version are available online at https://github.com/fbergmann/libSEDML/ Please report problems using the issue tracker at https://github.com/fbergmann/libSEDML/issues To contact the developers directly, email fbergman@caltech.edu Configured on host 'unknown' host type = Linux host operating system = Linux 4.12.9-300.fc26.x86_64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX -DPACKAGE_VERSION="0.4.3" -DPACKAGE_NAME="libsedml" CFLAGS = -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread SBML library configuration: SBML library = /usr/lib64/libsbml.so SBML include = -I/usr/include NUML library configuration: NUML library = /lib64/libnuml.so NUML include = -I/usr/include Other libSEDML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig -- Using C# = /usr/bin/mcs -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python2 -- Using Perl = /usr/bin/perl -- Using Ruby = /usr/bin/ruby -- Using libcheck = /usr/lib64/libcheck.so -- -- Using C++ namespace for libSEDML (libsedml) = no -- ---------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH INCLUDE_INSTALL_DIR LIBSBML_STATIC LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSEDML-0.4.3/build + make -j1 /usr/bin/cmake -H/builddir/build/BUILD/libSEDML-0.4.3 -B/builddir/build/BUILD/libSEDML-0.4.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build/CMakeFiles /builddir/build/BUILD/libSEDML-0.4.3/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/sedml /builddir/build/BUILD/libSEDML-0.4.3/build/sedml/CMakeFiles/sedml-static.dir/DependInfo.cmake --color= Scanning dependencies of target sedml-static make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 0%] Building CXX object sedml/CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/common/libsedml-version.cpp [ 1%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAddXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAddXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAddXML.cpp [ 2%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAlgorithm.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAlgorithm.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithm.cpp [ 3%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithmParameter.cpp [ 3%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedBase.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedBase.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp: In member function 'bool SedBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp:1985:8: warning: variable 'sedmlDeclared' set but not used [-Wunused-but-set-variable] bool sedmlDeclared = false; ^~~~~~~~~~~~~ [ 4%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChange.cpp [ 5%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeAttribute.cpp [ 5%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeXML.cpp [ 6%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedComputeChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedComputeChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedComputeChange.cpp [ 7%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedConstructorException.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedConstructorException.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedConstructorException.cpp [ 7%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedCurve.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedCurve.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedCurve.cpp [ 8%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataDescription.cpp [ 9%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataGenerator.cpp [ 10%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataSet.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataSet.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSet.cpp [ 10%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDataSource.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDataSource.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSource.cpp [ 11%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedDocument.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedDocument.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp: In member function 'virtual void SedDocument::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp:1330:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 12%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedError.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedError.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedError.cpp [ 12%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedErrorLog.cpp [ 13%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedFunctionalRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedFunctionalRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedFunctionalRange.cpp [ 14%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedListOf.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedListOf.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedListOf.cpp [ 14%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedModel.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedModel.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedModel.cpp [ 15%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedNamespaces.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedNamespaces.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedNamespaces.cpp [ 16%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedOneStep.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedOneStep.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOneStep.cpp [ 16%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedOutput.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedOutput.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOutput.cpp [ 17%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedParameter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedParameter.cpp [ 18%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedPlot2D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedPlot2D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp: In member function 'virtual void SedPlot2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp:514:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 19%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedPlot3D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedPlot3D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot3D.cpp [ 19%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRange.cpp [ 20%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedReader.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedReader.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReader.cpp [ 21%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedRemoveXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRemoveXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRemoveXML.cpp [ 21%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedRepeatedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedRepeatedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRepeatedTask.cpp [ 22%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedReport.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedReport.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReport.cpp [ 23%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSetValue.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSetValue.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSetValue.cpp [ 23%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSimulation.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSimulation.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSimulation.cpp [ 24%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSlice.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSlice.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp: In member function 'virtual SedBase* SedSlice::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp:262:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 25%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSteadyState.cpp [ 25%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSubTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSubTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSubTask.cpp [ 26%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedSurface.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedSurface.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSurface.cpp [ 27%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp: In member function 'virtual SedBase* SedTask::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp:376:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 28%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedTypeCodes.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedTypeCodes.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTypeCodes.cpp [ 28%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedUniformRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedUniformRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformRange.cpp [ 29%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedUniformTimeCourse.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedUniformTimeCourse.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformTimeCourse.cpp [ 30%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedVariable.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVariable.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVariable.cpp [ 30%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedVectorRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVectorRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVectorRange.cpp [ 31%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedVisitor.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedVisitor.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVisitor.cpp [ 32%] Building CXX object sedml/CMakeFiles/sedml-static.dir/SedWriter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/sedml-static.dir/SedWriter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedWriter.cpp [ 32%] Linking CXX static library libsedml-static.a cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/cmake -P CMakeFiles/sedml-static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/cmake -E cmake_link_script CMakeFiles/sedml-static.dir/link.txt --verbose=1 /usr/bin/ar qc libsedml-static.a CMakeFiles/sedml-static.dir/common/libsedml-version.cpp.o CMakeFiles/sedml-static.dir/SedAddXML.cpp.o CMakeFiles/sedml-static.dir/SedAlgorithm.cpp.o CMakeFiles/sedml-static.dir/SedAlgorithmParameter.cpp.o CMakeFiles/sedml-static.dir/SedBase.cpp.o CMakeFiles/sedml-static.dir/SedChange.cpp.o CMakeFiles/sedml-static.dir/SedChangeAttribute.cpp.o CMakeFiles/sedml-static.dir/SedChangeXML.cpp.o CMakeFiles/sedml-static.dir/SedComputeChange.cpp.o CMakeFiles/sedml-static.dir/SedConstructorException.cpp.o CMakeFiles/sedml-static.dir/SedCurve.cpp.o CMakeFiles/sedml-static.dir/SedDataDescription.cpp.o CMakeFiles/sedml-static.dir/SedDataGenerator.cpp.o CMakeFiles/sedml-static.dir/SedDataSet.cpp.o CMakeFiles/sedml-static.dir/SedDataSource.cpp.o CMakeFiles/sedml-static.dir/SedDocument.cpp.o CMakeFiles/sedml-static.dir/SedError.cpp.o CMakeFiles/sedml-static.dir/SedErrorLog.cpp.o CMakeFiles/sedml-static.dir/SedFunctionalRange.cpp.o CMakeFiles/sedml-static.dir/SedListOf.cpp.o CMakeFiles/sedml-static.dir/SedModel.cpp.o CMakeFiles/sedml-static.dir/SedNamespaces.cpp.o CMakeFiles/sedml-static.dir/SedOneStep.cpp.o CMakeFiles/sedml-static.dir/SedOutput.cpp.o CMakeFiles/sedml-static.dir/SedParameter.cpp.o CMakeFiles/sedml-static.dir/SedPlot2D.cpp.o CMakeFiles/sedml-static.dir/SedPlot3D.cpp.o CMakeFiles/sedml-static.dir/SedRange.cpp.o CMakeFiles/sedml-static.dir/SedReader.cpp.o CMakeFiles/sedml-static.dir/SedRemoveXML.cpp.o CMakeFiles/sedml-static.dir/SedRepeatedTask.cpp.o CMakeFiles/sedml-static.dir/SedReport.cpp.o CMakeFiles/sedml-static.dir/SedSetValue.cpp.o CMakeFiles/sedml-static.dir/SedSimulation.cpp.o CMakeFiles/sedml-static.dir/SedSlice.cpp.o CMakeFiles/sedml-static.dir/SedSteadyState.cpp.o CMakeFiles/sedml-static.dir/SedSubTask.cpp.o CMakeFiles/sedml-static.dir/SedSurface.cpp.o CMakeFiles/sedml-static.dir/SedTask.cpp.o CMakeFiles/sedml-static.dir/SedTypeCodes.cpp.o CMakeFiles/sedml-static.dir/SedUniformRange.cpp.o CMakeFiles/sedml-static.dir/SedUniformTimeCourse.cpp.o CMakeFiles/sedml-static.dir/SedVariable.cpp.o CMakeFiles/sedml-static.dir/SedVectorRange.cpp.o CMakeFiles/sedml-static.dir/SedVisitor.cpp.o CMakeFiles/sedml-static.dir/SedWriter.cpp.o /usr/bin/ranlib libsedml-static.a make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 32%] Built target sedml-static make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/sedml /builddir/build/BUILD/libSEDML-0.4.3/build/sedml/CMakeFiles/sedml.dir/DependInfo.cmake --color= Scanning dependencies of target sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 33%] Building CXX object sedml/CMakeFiles/sedml.dir/common/libsedml-version.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/common/libsedml-version.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/common/libsedml-version.cpp [ 34%] Building CXX object sedml/CMakeFiles/sedml.dir/SedAddXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAddXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAddXML.cpp [ 34%] Building CXX object sedml/CMakeFiles/sedml.dir/SedAlgorithm.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAlgorithm.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithm.cpp [ 35%] Building CXX object sedml/CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedAlgorithmParameter.cpp [ 36%] Building CXX object sedml/CMakeFiles/sedml.dir/SedBase.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedBase.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp: In member function 'bool SedBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedBase.cpp:1985:8: warning: variable 'sedmlDeclared' set but not used [-Wunused-but-set-variable] bool sedmlDeclared = false; ^~~~~~~~~~~~~ [ 36%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChange.cpp [ 37%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeAttribute.cpp [ 38%] Building CXX object sedml/CMakeFiles/sedml.dir/SedChangeXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedChangeXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedChangeXML.cpp [ 38%] Building CXX object sedml/CMakeFiles/sedml.dir/SedComputeChange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedComputeChange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedComputeChange.cpp [ 39%] Building CXX object sedml/CMakeFiles/sedml.dir/SedConstructorException.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedConstructorException.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedConstructorException.cpp [ 40%] Building CXX object sedml/CMakeFiles/sedml.dir/SedCurve.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedCurve.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedCurve.cpp [ 40%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataDescription.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataDescription.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataDescription.cpp [ 41%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataGenerator.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataGenerator.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataGenerator.cpp [ 42%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataSet.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataSet.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSet.cpp [ 43%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDataSource.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDataSource.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDataSource.cpp [ 43%] Building CXX object sedml/CMakeFiles/sedml.dir/SedDocument.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedDocument.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp: In member function 'virtual void SedDocument::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedDocument.cpp:1330:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 44%] Building CXX object sedml/CMakeFiles/sedml.dir/SedError.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedError.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedError.cpp [ 45%] Building CXX object sedml/CMakeFiles/sedml.dir/SedErrorLog.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedErrorLog.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedErrorLog.cpp [ 45%] Building CXX object sedml/CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedFunctionalRange.cpp [ 46%] Building CXX object sedml/CMakeFiles/sedml.dir/SedListOf.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedListOf.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedListOf.cpp [ 47%] Building CXX object sedml/CMakeFiles/sedml.dir/SedModel.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedModel.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedModel.cpp [ 47%] Building CXX object sedml/CMakeFiles/sedml.dir/SedNamespaces.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedNamespaces.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedNamespaces.cpp [ 48%] Building CXX object sedml/CMakeFiles/sedml.dir/SedOneStep.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedOneStep.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOneStep.cpp [ 49%] Building CXX object sedml/CMakeFiles/sedml.dir/SedOutput.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedOutput.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedOutput.cpp [ 50%] Building CXX object sedml/CMakeFiles/sedml.dir/SedParameter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedParameter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedParameter.cpp [ 50%] Building CXX object sedml/CMakeFiles/sedml.dir/SedPlot2D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedPlot2D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp: In member function 'virtual void SedPlot2D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot2D.cpp:514:8: warning: unused variable 'assigned' [-Wunused-variable] bool assigned = false; ^~~~~~~~ [ 51%] Building CXX object sedml/CMakeFiles/sedml.dir/SedPlot3D.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedPlot3D.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedPlot3D.cpp [ 52%] Building CXX object sedml/CMakeFiles/sedml.dir/SedRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRange.cpp [ 52%] Building CXX object sedml/CMakeFiles/sedml.dir/SedReader.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedReader.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReader.cpp [ 53%] Building CXX object sedml/CMakeFiles/sedml.dir/SedRemoveXML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRemoveXML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRemoveXML.cpp [ 54%] Building CXX object sedml/CMakeFiles/sedml.dir/SedRepeatedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedRepeatedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedRepeatedTask.cpp [ 54%] Building CXX object sedml/CMakeFiles/sedml.dir/SedReport.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedReport.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedReport.cpp [ 55%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSetValue.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSetValue.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSetValue.cpp [ 56%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSimulation.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSimulation.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSimulation.cpp [ 56%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSlice.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSlice.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp: In member function 'virtual SedBase* SedSlice::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSlice.cpp:262:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 57%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSteadyState.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSteadyState.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSteadyState.cpp [ 58%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSubTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSubTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSubTask.cpp [ 59%] Building CXX object sedml/CMakeFiles/sedml.dir/SedSurface.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedSurface.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedSurface.cpp [ 59%] Building CXX object sedml/CMakeFiles/sedml.dir/SedTask.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedTask.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp: In member function 'virtual SedBase* SedTask::createObject(XMLInputStream&)': /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTask.cpp:376:17: warning: unused variable 'name' [-Wunused-variable] const string& name = stream.peek().getName(); ^~~~ [ 60%] Building CXX object sedml/CMakeFiles/sedml.dir/SedTypeCodes.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedTypeCodes.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedTypeCodes.cpp [ 61%] Building CXX object sedml/CMakeFiles/sedml.dir/SedUniformRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedUniformRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformRange.cpp [ 61%] Building CXX object sedml/CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedUniformTimeCourse.cpp [ 62%] Building CXX object sedml/CMakeFiles/sedml.dir/SedVariable.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVariable.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVariable.cpp [ 63%] Building CXX object sedml/CMakeFiles/sedml.dir/SedVectorRange.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVectorRange.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVectorRange.cpp [ 63%] Building CXX object sedml/CMakeFiles/sedml.dir/SedVisitor.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedVisitor.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedVisitor.cpp [ 64%] Building CXX object sedml/CMakeFiles/sedml.dir/SedWriter.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/c++ -DLIBSEDML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dsedml_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml/.. -I/builddir/build/BUILD/libSEDML-0.4.3/sedml -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/sedml.dir/SedWriter.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/sedml/SedWriter.cpp [ 65%] Linking CXX shared library libsedml.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/cmake -E cmake_link_script CMakeFiles/sedml.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,libsedml.so.0 -o libsedml.so.0.4.3 CMakeFiles/sedml.dir/common/libsedml-version.cpp.o CMakeFiles/sedml.dir/SedAddXML.cpp.o CMakeFiles/sedml.dir/SedAlgorithm.cpp.o CMakeFiles/sedml.dir/SedAlgorithmParameter.cpp.o CMakeFiles/sedml.dir/SedBase.cpp.o CMakeFiles/sedml.dir/SedChange.cpp.o CMakeFiles/sedml.dir/SedChangeAttribute.cpp.o CMakeFiles/sedml.dir/SedChangeXML.cpp.o CMakeFiles/sedml.dir/SedComputeChange.cpp.o CMakeFiles/sedml.dir/SedConstructorException.cpp.o CMakeFiles/sedml.dir/SedCurve.cpp.o CMakeFiles/sedml.dir/SedDataDescription.cpp.o CMakeFiles/sedml.dir/SedDataGenerator.cpp.o CMakeFiles/sedml.dir/SedDataSet.cpp.o CMakeFiles/sedml.dir/SedDataSource.cpp.o CMakeFiles/sedml.dir/SedDocument.cpp.o CMakeFiles/sedml.dir/SedError.cpp.o CMakeFiles/sedml.dir/SedErrorLog.cpp.o CMakeFiles/sedml.dir/SedFunctionalRange.cpp.o CMakeFiles/sedml.dir/SedListOf.cpp.o CMakeFiles/sedml.dir/SedModel.cpp.o CMakeFiles/sedml.dir/SedNamespaces.cpp.o CMakeFiles/sedml.dir/SedOneStep.cpp.o CMakeFiles/sedml.dir/SedOutput.cpp.o CMakeFiles/sedml.dir/SedParameter.cpp.o CMakeFiles/sedml.dir/SedPlot2D.cpp.o CMakeFiles/sedml.dir/SedPlot3D.cpp.o CMakeFiles/sedml.dir/SedRange.cpp.o CMakeFiles/sedml.dir/SedReader.cpp.o CMakeFiles/sedml.dir/SedRemoveXML.cpp.o CMakeFiles/sedml.dir/SedRepeatedTask.cpp.o CMakeFiles/sedml.dir/SedReport.cpp.o CMakeFiles/sedml.dir/SedSetValue.cpp.o CMakeFiles/sedml.dir/SedSimulation.cpp.o CMakeFiles/sedml.dir/SedSlice.cpp.o CMakeFiles/sedml.dir/SedSteadyState.cpp.o CMakeFiles/sedml.dir/SedSubTask.cpp.o CMakeFiles/sedml.dir/SedSurface.cpp.o CMakeFiles/sedml.dir/SedTask.cpp.o CMakeFiles/sedml.dir/SedTypeCodes.cpp.o CMakeFiles/sedml.dir/SedUniformRange.cpp.o CMakeFiles/sedml.dir/SedUniformTimeCourse.cpp.o CMakeFiles/sedml.dir/SedVariable.cpp.o CMakeFiles/sedml.dir/SedVectorRange.cpp.o CMakeFiles/sedml.dir/SedVisitor.cpp.o CMakeFiles/sedml.dir/SedWriter.cpp.o /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl cd /builddir/build/BUILD/libSEDML-0.4.3/build/sedml && /usr/bin/cmake -E cmake_symlink_library libsedml.so.0.4.3 libsedml.so.0 libsedml.so make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 65%] Built target sedml make -f bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_csharp_swig make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 65%] Built target binding_csharp_swig make -f bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 66%] Swig C# source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp && /usr/bin/cmake -E remove_directory /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/csharp-files cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp && /usr/bin/cmake -E make_directory /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/csharp-files cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp && /usr/bin/swig -I/usr/share/swig/3.0.11/csharp -I/usr/share/swig/3.0.11/std -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp -I/usr/include/ -I/usr/include/ -c++ -csharp -namespace libsedmlcs -dllimport libsedmlcs -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -outdir /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/csharp-files -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/../swig/libsedml.i /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. /usr/include/sbml/xml/XMLConstructorException.h:68: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/xml/XMLInputStream.h:326: Warning 844: C# exception may not be thrown - no $excode or excode attribute in 'csout' typemap. /usr/include/sbml/xml/XMLInputStream.h:353: Warning 844: C# exception may not be thrown - no $excode or excode attribute in 'csout' typemap. cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_csharp_native_lib make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 66%] Building CXX object bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/libsedml_wrap.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp && /usr/bin/c++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dbinding_csharp_native_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/../swig -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_csharp_native_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/libsedml_wrap.cpp [ 67%] Linking CXX shared library libsedmlcs.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_csharp_native_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,libsedmlcs.so -o libsedmlcs.so CMakeFiles/binding_csharp_native_lib.dir/libsedml_wrap.cpp.o ../../sedml/libsedml-static.a /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 67%] Built target binding_csharp_native_lib make -f bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_csharp_managed_lib make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 67%] Build csharp files cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp && /usr/bin/cmake -DCSHARP_EXTRA_ARGS="" -DCSHARP_COMPILER="/usr/bin/mcs" -DBIN_DIRECTORY="/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp" -P /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp/compile-native-files.cmake Creating: libsedmlcsP.dll Creating: TestRunner.exe make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 68%] Built target binding_csharp_managed_lib make -f bindings/java/CMakeFiles/binding_java_swig.dir/build.make bindings/java/CMakeFiles/binding_java_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_java_swig make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/java/CMakeFiles/binding_java_swig.dir/build.make bindings/java/CMakeFiles/binding_java_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 69%] Swig Java source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java && /usr/bin/cmake -E make_directory /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/java-files/org/sedml/libsedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/java/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/java/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/java/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/java -I/usr/include/ -I/usr/include/ -c++ -java -package org.sedml.libsedml -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -outdir /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/java-files/org/sedml/libsedml -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/java/../swig/libsedml.i /builddir/build/BUILD/libSEDML-0.4.3/bindings/java/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. /usr/include/sbml/xml/XMLConstructorException.h:68: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 69%] Built target binding_java_swig make -f bindings/java/CMakeFiles/binding_java_jar.dir/build.make bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= Scanning dependencies of target binding_java_jar make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/java/CMakeFiles/binding_java_jar.dir/build.make bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 70%] Building: libsedml.jar cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java && /usr/bin/cmake -E make_directory /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/test cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java && /usr/bin/cmake -DJava_JAVAC_EXECUTABLE="/usr/bin/javac" -DJava_JAR_EXECUTABLE="/usr/bin/jar" -DBIN_DIRECTORY="/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSEDML-0.4.3/bindings/java" -DFILE_SEP=":" -DPATH_SEP=/ -P /builddir/build/BUILD/libSEDML-0.4.3/bindings/java/compile-native-files.cmake Creating: libsedml.jar warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings added manifest adding: org/sedml/libsedml/ASTNode.class(in = 16179) (out= 4754)(deflated 70%) adding: org/sedml/libsedml/ASTNodeList.class(in = 1542) (out= 711)(deflated 53%) adding: org/sedml/libsedml/AtomicDescription.class(in = 2776) (out= 1078)(deflated 61%) adding: org/sedml/libsedml/AtomicValue.class(in = 2512) (out= 1047)(deflated 58%) adding: org/sedml/libsedml/CVTerm.class(in = 4674) (out= 1650)(deflated 64%) adding: org/sedml/libsedml/CVTermList.class(in = 1524) (out= 711)(deflated 53%) adding: org/sedml/libsedml/CompositeDescription.class(in = 4937) (out= 1542)(deflated 68%) adding: org/sedml/libsedml/CompositeValue.class(in = 5054) (out= 1641)(deflated 67%) adding: org/sedml/libsedml/Date.class(in = 4765) (out= 1770)(deflated 62%) adding: org/sedml/libsedml/DateList.class(in = 1488) (out= 708)(deflated 52%) adding: org/sedml/libsedml/Dimension.class(in = 3157) (out= 1211)(deflated 61%) adding: org/sedml/libsedml/DimensionDescription.class(in = 3942) (out= 1334)(deflated 66%) adding: org/sedml/libsedml/DoubleStdVector.class(in = 2036) (out= 867)(deflated 57%) adding: org/sedml/libsedml/L3ParserSettings.class(in = 4543) (out= 1510)(deflated 66%) adding: org/sedml/libsedml/MathML.class(in = 1254) (out= 661)(deflated 47%) adding: org/sedml/libsedml/Model.class(in = 36039) (out= 9101)(deflated 74%) adding: org/sedml/libsedml/ModelCreatorList.class(in = 1641) (out= 724)(deflated 55%) adding: org/sedml/libsedml/NMBase.class(in = 8128) (out= 2445)(deflated 69%) adding: org/sedml/libsedml/NUMLConstructorException.class(in = 907) (out= 533)(deflated 41%) adding: org/sedml/libsedml/NUMLDocument.class(in = 5377) (out= 1842)(deflated 65%) adding: org/sedml/libsedml/NUMLError.class(in = 2275) (out= 973)(deflated 57%) adding: org/sedml/libsedml/NUMLErrorLog.class(in = 3518) (out= 1258)(deflated 64%) adding: org/sedml/libsedml/NUMLList.class(in = 3371) (out= 1277)(deflated 62%) adding: org/sedml/libsedml/NUMLNamespaces.class(in = 2601) (out= 1042)(deflated 59%) adding: org/sedml/libsedml/NUMLReader.class(in = 1654) (out= 797)(deflated 51%) adding: org/sedml/libsedml/NUMLWriter.class(in = 2479) (out= 999)(deflated 59%) adding: org/sedml/libsedml/OFStream.class(in = 1712) (out= 794)(deflated 53%) adding: org/sedml/libsedml/ONTOLOGY.class(in = 1578) (out= 742)(deflated 52%) adding: org/sedml/libsedml/OStream.class(in = 1404) (out= 751)(deflated 46%) adding: org/sedml/libsedml/OStringStream.class(in = 1247) (out= 646)(deflated 48%) adding: org/sedml/libsedml/OntologyTerm.class(in = 3203) (out= 1183)(deflated 63%) adding: org/sedml/libsedml/OntologyTerms.class(in = 2231) (out= 942)(deflated 57%) adding: org/sedml/libsedml/ResultComponent.class(in = 5580) (out= 1760)(deflated 68%) adding: org/sedml/libsedml/ResultComponents.class(in = 2478) (out= 984)(deflated 60%) adding: org/sedml/libsedml/SBMLNamespaces.class(in = 5735) (out= 1810)(deflated 68%) adding: org/sedml/libsedml/SBase.class(in = 19917) (out= 5461)(deflated 72%) adding: org/sedml/libsedml/SBaseList.class(in = 1506) (out= 710)(deflated 52%) adding: org/sedml/libsedml/SWIGTYPE_p_ASTBasePlugin.class(in = 463) (out= 301)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_ASTNodeType_t.class(in = 463) (out= 301)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_AlgebraicRule.class(in = 463) (out= 301)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_AssignmentRule.class(in = 466) (out= 300)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_Compartment.class(in = 457) (out= 299)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_CompartmentType.class(in = 469) (out= 302)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_Constraint.class(in = 454) (out= 297)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_Delay.class(in = 439) (out= 293)(deflated 33%) adding: org/sedml/libsedml/SWIGTYPE_p_ElementFilter.class(in = 463) (out= 299)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_Event.class(in = 439) (out= 291)(deflated 33%) adding: org/sedml/libsedml/SWIGTYPE_p_EventAssignment.class(in = 469) (out= 301)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_FormulaUnitsData.class(in = 472) (out= 302)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_FunctionDefinition.class(in = 478) (out= 302)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_IdentifierTransformer.class(in = 487) (out= 305)(deflated 37%) adding: org/sedml/libsedml/SWIGTYPE_p_InitialAssignment.class(in = 475) (out= 302)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_KineticLaw.class(in = 454) (out= 296)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_L3ParserSettings_t.class(in = 478) (out= 304)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_List.class(in = 436) (out= 290)(deflated 33%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfCompartmentTypes.class(in = 490) (out= 309)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfCompartments.class(in = 478) (out= 304)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfConstraints.class(in = 475) (out= 302)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfEvents.class(in = 460) (out= 299)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfFunctionDefinitions.class(in = 499) (out= 308)(deflated 38%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfInitialAssignments.class(in = 496) (out= 308)(deflated 37%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfParameters.class(in = 472) (out= 302)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfReactions.class(in = 469) (out= 302)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfRules.class(in = 457) (out= 299)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfSpecies.class(in = 463) (out= 301)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfSpeciesTypes.class(in = 478) (out= 305)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_ListOfUnitDefinitions.class(in = 487) (out= 305)(deflated 37%) adding: org/sedml/libsedml/SWIGTYPE_p_LocalParameter.class(in = 466) (out= 300)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_ModelCreator.class(in = 460) (out= 297)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_ModelHistory.class(in = 460) (out= 299)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_Model_t.class(in = 445) (out= 292)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_ModifierSpeciesReference.class(in = 496) (out= 309)(deflated 37%) adding: org/sedml/libsedml/SWIGTYPE_p_NUMLDocument_t.class(in = 466) (out= 301)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_Parameter.class(in = 451) (out= 296)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_RateRule.class(in = 448) (out= 296)(deflated 33%) adding: org/sedml/libsedml/SWIGTYPE_p_Reaction.class(in = 448) (out= 295)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_Rule.class(in = 436) (out= 290)(deflated 33%) adding: org/sedml/libsedml/SWIGTYPE_p_SBMLDocument.class(in = 460) (out= 300)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_SBasePlugin.class(in = 457) (out= 299)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_Species.class(in = 445) (out= 293)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_SpeciesReference.class(in = 472) (out= 302)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_SpeciesType.class(in = 457) (out= 299)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_StringBuffer_t.class(in = 466) (out= 301)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_Trigger.class(in = 445) (out= 292)(deflated 34%) adding: org/sedml/libsedml/SWIGTYPE_p_Unit.class(in = 436) (out= 290)(deflated 33%) adding: org/sedml/libsedml/SWIGTYPE_p_UnitDefinition.class(in = 466) (out= 298)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_XMLNamespaces_t.class(in = 469) (out= 303)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_std__listT_NUMLError_t.class(in = 490) (out= 309)(deflated 36%) adding: org/sedml/libsedml/SWIGTYPE_p_std__listT_SedError_t.class(in = 487) (out= 306)(deflated 37%) adding: org/sedml/libsedml/SWIGTYPE_p_std__ostream.class(in = 460) (out= 298)(deflated 35%) adding: org/sedml/libsedml/SWIGTYPE_p_void.class(in = 436) (out= 290)(deflated 33%) adding: org/sedml/libsedml/SedAddXML.class(in = 3052) (out= 1178)(deflated 61%) adding: org/sedml/libsedml/SedAlgorithm.class(in = 5218) (out= 1678)(deflated 67%) adding: org/sedml/libsedml/SedAlgorithmParameter.class(in = 3901) (out= 1324)(deflated 66%) adding: org/sedml/libsedml/SedBase.class(in = 11106) (out= 3182)(deflated 71%) adding: org/sedml/libsedml/SedBaseList.class(in = 1542) (out= 711)(deflated 53%) adding: org/sedml/libsedml/SedChange.class(in = 2976) (out= 1161)(deflated 60%) adding: org/sedml/libsedml/SedChangeAttribute.class(in = 3139) (out= 1144)(deflated 63%) adding: org/sedml/libsedml/SedChangeXML.class(in = 3130) (out= 1182)(deflated 62%) adding: org/sedml/libsedml/SedComputeChange.class(in = 6494) (out= 1979)(deflated 69%) adding: org/sedml/libsedml/SedConstructorException.class(in = 1814) (out= 799)(deflated 55%) adding: org/sedml/libsedml/SedCurve.class(in = 6857) (out= 2128)(deflated 68%) adding: org/sedml/libsedml/SedDataDescription.class(in = 7186) (out= 2093)(deflated 70%) adding: org/sedml/libsedml/SedDataGenerator.class(in = 7332) (out= 2184)(deflated 70%) adding: org/sedml/libsedml/SedDataSet.class(in = 4044) (out= 1428)(deflated 64%) adding: org/sedml/libsedml/SedDataSource.class(in = 5443) (out= 1774)(deflated 67%) adding: org/sedml/libsedml/SedDocument.class(in = 13881) (out= 3844)(deflated 72%) adding: org/sedml/libsedml/SedError.class(in = 2506) (out= 984)(deflated 60%) adding: org/sedml/libsedml/SedErrorLog.class(in = 6205) (out= 1819)(deflated 70%) adding: org/sedml/libsedml/SedErrorStdVector.class(in = 2319) (out= 928)(deflated 59%) adding: org/sedml/libsedml/SedFunctionalRange.class(in = 7080) (out= 2103)(deflated 70%) adding: org/sedml/libsedml/SedListOf.class(in = 4476) (out= 1567)(deflated 64%) adding: org/sedml/libsedml/SedListOfAlgorithmParameters.class(in = 3747) (out= 1228)(deflated 67%) adding: org/sedml/libsedml/SedListOfChanges.class(in = 4289) (out= 1499)(deflated 65%) adding: org/sedml/libsedml/SedListOfCurves.class(in = 3253) (out= 1198)(deflated 63%) adding: org/sedml/libsedml/SedListOfDataDescriptions.class(in = 3633) (out= 1219)(deflated 66%) adding: org/sedml/libsedml/SedListOfDataGenerators.class(in = 3557) (out= 1215)(deflated 65%) adding: org/sedml/libsedml/SedListOfDataSets.class(in = 3329) (out= 1205)(deflated 63%) adding: org/sedml/libsedml/SedListOfDataSources.class(in = 3443) (out= 1207)(deflated 64%) adding: org/sedml/libsedml/SedListOfFunctionalRanges.class(in = 3633) (out= 1217)(deflated 66%) adding: org/sedml/libsedml/SedListOfModels.class(in = 3253) (out= 1198)(deflated 63%) adding: org/sedml/libsedml/SedListOfOutputs.class(in = 3797) (out= 1372)(deflated 63%) adding: org/sedml/libsedml/SedListOfParameters.class(in = 3405) (out= 1207)(deflated 64%) adding: org/sedml/libsedml/SedListOfRanges.class(in = 3824) (out= 1375)(deflated 64%) adding: org/sedml/libsedml/SedListOfSimulations.class(in = 3997) (out= 1391)(deflated 65%) adding: org/sedml/libsedml/SedListOfSlices.class(in = 3253) (out= 1198)(deflated 63%) adding: org/sedml/libsedml/SedListOfSubTasks.class(in = 3329) (out= 1204)(deflated 63%) adding: org/sedml/libsedml/SedListOfSurfaces.class(in = 3329) (out= 1204)(deflated 63%) adding: org/sedml/libsedml/SedListOfTaskChanges.class(in = 3419) (out= 1206)(deflated 64%) adding: org/sedml/libsedml/SedListOfTasks.class(in = 3475) (out= 1291)(deflated 62%) adding: org/sedml/libsedml/SedListOfVariables.class(in = 3367) (out= 1199)(deflated 64%) adding: org/sedml/libsedml/SedModel.class(in = 6561) (out= 2170)(deflated 66%) adding: org/sedml/libsedml/SedNamespaces.class(in = 3807) (out= 1366)(deflated 64%) adding: org/sedml/libsedml/SedNamespacesList.class(in = 1650) (out= 719)(deflated 56%) adding: org/sedml/libsedml/SedOneStep.class(in = 2913) (out= 1158)(deflated 60%) adding: org/sedml/libsedml/SedOutput.class(in = 3554) (out= 1327)(deflated 62%) adding: org/sedml/libsedml/SedParameter.class(in = 3773) (out= 1365)(deflated 63%) adding: org/sedml/libsedml/SedPlot2D.class(in = 4846) (out= 1673)(deflated 65%) adding: org/sedml/libsedml/SedPlot3D.class(in = 4133) (out= 1471)(deflated 64%) adding: org/sedml/libsedml/SedRange.class(in = 2914) (out= 1154)(deflated 60%) adding: org/sedml/libsedml/SedReader.class(in = 1647) (out= 793)(deflated 51%) adding: org/sedml/libsedml/SedRemoveXML.class(in = 2500) (out= 1034)(deflated 58%) adding: org/sedml/libsedml/SedRepeatedTask.class(in = 8699) (out= 2552)(deflated 70%) adding: org/sedml/libsedml/SedReport.class(in = 4133) (out= 1471)(deflated 64%) adding: org/sedml/libsedml/SedSetValue.class(in = 7908) (out= 2374)(deflated 69%) adding: org/sedml/libsedml/SedSimulation.class(in = 4505) (out= 1549)(deflated 65%) adding: org/sedml/libsedml/SedSlice.class(in = 3496) (out= 1310)(deflated 62%) adding: org/sedml/libsedml/SedSteadyState.class(in = 2546) (out= 1037)(deflated 59%) adding: org/sedml/libsedml/SedSubTask.class(in = 3312) (out= 1250)(deflated 62%) adding: org/sedml/libsedml/SedSurface.class(in = 3385) (out= 1269)(deflated 62%) adding: org/sedml/libsedml/SedTask.class(in = 4382) (out= 1521)(deflated 65%) adding: org/sedml/libsedml/SedUniformRange.class(in = 4402) (out= 1490)(deflated 66%) adding: org/sedml/libsedml/SedUniformTimeCourse.class(in = 4738) (out= 1505)(deflated 68%) adding: org/sedml/libsedml/SedVariable.class(in = 4916) (out= 1599)(deflated 67%) adding: org/sedml/libsedml/SedVectorRange.class(in = 3456) (out= 1279)(deflated 62%) adding: org/sedml/libsedml/SedWriter.class(in = 2686) (out= 1052)(deflated 60%) adding: org/sedml/libsedml/Tuple.class(in = 3012) (out= 1199)(deflated 60%) adding: org/sedml/libsedml/TupleDescription.class(in = 3597) (out= 1292)(deflated 64%) adding: org/sedml/libsedml/XMLAttributes.class(in = 6722) (out= 1883)(deflated 71%) adding: org/sedml/libsedml/XMLConstructorException.class(in = 1109) (out= 615)(deflated 44%) adding: org/sedml/libsedml/XMLError.class(in = 4368) (out= 1614)(deflated 63%) adding: org/sedml/libsedml/XMLErrorLog.class(in = 4097) (out= 1462)(deflated 64%) adding: org/sedml/libsedml/XMLInputStream.class(in = 4641) (out= 1513)(deflated 67%) adding: org/sedml/libsedml/XMLNamespaces.class(in = 4087) (out= 1399)(deflated 65%) adding: org/sedml/libsedml/XMLNode.class(in = 7570) (out= 2211)(deflated 70%) adding: org/sedml/libsedml/XMLOutputStream.class(in = 8737) (out= 2362)(deflated 72%) adding: org/sedml/libsedml/XMLOwningOutputFileStream.class(in = 1951) (out= 759)(deflated 61%) adding: org/sedml/libsedml/XMLOwningOutputStringStream.class(in = 1659) (out= 707)(deflated 57%) adding: org/sedml/libsedml/XMLToken.class(in = 12792) (out= 3283)(deflated 74%) adding: org/sedml/libsedml/XMLTriple.class(in = 2398) (out= 1033)(deflated 56%) adding: org/sedml/libsedml/XmlErrorStdVector.class(in = 2335) (out= 949)(deflated 59%) adding: org/sedml/libsedml/libsedml.class(in = 11067) (out= 3793)(deflated 65%) adding: org/sedml/libsedml/libsedmlConstants.class(in = 35466) (out= 11270)(deflated 68%) adding: org/sedml/libsedml/libsedmlJNI.class(in = 162502) (out= 32575)(deflated 79%) make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 70%] Built target binding_java_jar make -f bindings/java/CMakeFiles/binding_java_lib.dir/build.make bindings/java/CMakeFiles/binding_java_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_java_lib make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/java/CMakeFiles/binding_java_lib.dir/build.make bindings/java/CMakeFiles/binding_java_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 71%] Building CXX object bindings/java/CMakeFiles/binding_java_lib.dir/libsedml_wrap.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java && /usr/bin/c++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dbinding_java_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/java/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/java -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/java/../swig -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_java_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/libsedml_wrap.cpp [ 71%] Linking CXX shared library libsedmlj.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_java_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,libsedmlj.so -o libsedmlj.so CMakeFiles/binding_java_lib.dir/libsedml_wrap.cpp.o ../../sedml/libsedml-static.a /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 72%] Built target binding_java_lib make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_swig make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 73%] Swig Python source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python -I/usr/include/ -I/usr/include/ -c++ -python -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/libsedml.i /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python" -DVERSION="0.4.3" -P /builddir/build/BUILD/libSEDML-0.4.3/bindings/python/add_version.cmake Python: Add Version to generated file make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 73%] Built target binding_python_swig make -f bindings/python/CMakeFiles/binding_python_lib.dir/build.make bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/python/CMakeFiles/binding_python_lib.dir/build.make bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 73%] Building CXX object bindings/python/CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python && /usr/bin/c++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/python/../swig -I/usr/include/python2.7 -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/libsedml_wrap.cpp [ 74%] Linking CXX shared library _libsedml.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,_libsedml.so -o _libsedml.so CMakeFiles/binding_python_lib.dir/libsedml_wrap.cpp.o ../../sedml/libsedml-static.a -lpython2.7 /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 75%] Built target binding_python_lib make -f bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_perl_swig make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 76%] Swig Perl bindings source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl -I/usr/include/ -I/usr/include/ -c++ -perl5 -proxy -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/LibSEDML_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/libsedml.i /usr/include/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. /usr/include/sbml/xml/XMLConstructorException.h:68: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 76%] Built target binding_perl_swig make -f bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_perl_lib make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 77%] Swig Perl bindings source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl -I/usr/include/ -I/usr/include/ -c++ -perl5 -proxy -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/LibSEDML_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/libsedml.i /usr/include/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. /usr/include/sbml/xml/XMLConstructorException.h:68: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. [ 78%] Building CXX object bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/c++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../swig -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/LibSEDML.cpp [ 78%] Linking CXX shared module LibSEDML.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -o LibSEDML.so CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o ../../sedml/libsedml-static.a -lperl /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 78%] Built target binding_perl_lib make -f bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_ruby_swig make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 79%] Swig Ruby source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby -I/usr/include/ -I/usr/include/ -c++ -ruby -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/libsedml.i /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/local.i:129: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/local.i:129: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 79%] Built target binding_ruby_swig make -f bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_ruby_lib make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 79%] Building CXX object bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsedml_wrap.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby && /usr/bin/c++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby/../swig -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_ruby_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = long int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:4791:127: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:4914:131: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector; Difference = long int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:5266:100: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector; Difference = int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:5389:104: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector; Difference = long int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:5648:107: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector; Difference = int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:5771:111: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector; Difference = long int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:5976:104: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::vector; Difference = int]': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:6099:108: required from here /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/libsedml_wrap.cpp:3811:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); ~~^~~~~~~ [ 80%] Linking CXX shared library libSEDML.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_ruby_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,libSEDML.so -o libSEDML.so CMakeFiles/binding_ruby_lib.dir/libsedml_wrap.cpp.o ../../sedml/libsedml-static.a -lruby /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 81%] Built target binding_ruby_lib make -f bindings/r/CMakeFiles/binding_r_swig.dir/build.make bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_swig make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/r/CMakeFiles/binding_r_swig.dir/build.make bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 82%] Swig R source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/r/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/r/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/r/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/r -I/usr/include/ -I/usr/include/ -c++ -r -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/libsedml.i /usr/include/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a R keyword, renaming to '_next' /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/local.i:1: Warning 401: Base class 'std::basic_ios< char >' has no name as it is an empty template instantiated with '%template()'. Ignored. /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/local.i:156: Warning 401: The %template directive must be written before 'std::basic_ios< char >' is used as a base class and be declared with a name. /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. /usr/include/sbml/xml/XMLConstructorException.h:68: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 82%] Built target binding_r_swig make -f bindings/r/CMakeFiles/binding_r_lib.dir/build.make bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_lib make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/r/CMakeFiles/binding_r_lib.dir/build.make bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 83%] Building CXX object bindings/r/CMakeFiles/binding_r_lib.dir/libsedml_wrap.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/c++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/r/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/r -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/r/../swig -I/usr/include/R -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_r_lib.dir/libsedml_wrap.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libsedml_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libsedml_wrap.cpp: In function 'int _p_f_p_q_const__ASTNode__int(const ASTNode_t*)': /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libsedml_wrap.cpp:58171:14: warning: unused variable 'arg1' [-Wunused-variable] ASTNode_t *arg1 = (ASTNode_t *) 0 ; ^~~~ /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libsedml_wrap.cpp:58177:7: warning: unused variable 'ecode' [-Wunused-variable] int ecode = 0; ^~~~~ [ 84%] Linking CXX shared library libSEDML.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -Wl,-soname,libSEDML.so -o libSEDML.so CMakeFiles/binding_r_lib.dir/libsedml_wrap.cpp.o -L/usr/lib64/R/lib ../../sedml/libsedml-static.a -lR /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 84%] Built target binding_r_lib make -f bindings/r/CMakeFiles/binding_r_package.dir/build.make bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= Scanning dependencies of target binding_r_package make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/r/CMakeFiles/binding_r_package.dir/build.make bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 84%] Create R Package (64bit) cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML.R" -P /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/patch-swig-file.cmake DONE cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML.so /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML/inst/libs cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML.R /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML/R cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/R CMD INSTALL --build --no-libs --no-test-load --no-clean-on-error --no-multiarch libSEDML -l temp * installing *source* package 'libSEDML' ... ** R ** inst ** preparing package for lazy loading ** help No man pages found in package 'libSEDML' *** installing help indices ** building package indices * creating tarball packaged installation of 'libSEDML' as 'libSEDML_0.4.3_R_x86_64-redhat-linux-gnu.tar.gz' * DONE (libSEDML) make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 85%] Built target binding_r_package make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/CMakeFiles/example_c_echo_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_c_echo_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 86%] Building C object examples/c/CMakeFiles/example_c_echo_sedml.dir/echo_sedml.c.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c && /usr/bin/cc -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/example_c_echo_sedml.dir/echo_sedml.c.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c/echo_sedml.c [ 86%] Linking CXX executable echo_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_c_echo_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_c_echo_sedml.dir/echo_sedml.c.o -o echo_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 86%] Built target example_c_echo_sedml make -f examples/c/CMakeFiles/example_c_print_sedml.dir/build.make examples/c/CMakeFiles/example_c_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/CMakeFiles/example_c_print_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_c_print_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c/CMakeFiles/example_c_print_sedml.dir/build.make examples/c/CMakeFiles/example_c_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 87%] Building C object examples/c/CMakeFiles/example_c_print_sedml.dir/print_sedml.c.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c && /usr/bin/cc -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/example_c_print_sedml.dir/print_sedml.c.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c/print_sedml.c [ 88%] Linking CXX executable print_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_c_print_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_c_print_sedml.dir/print_sedml.c.o -o print_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 88%] Built target example_c_print_sedml make -f examples/c/CMakeFiles/example_c_create_sedml.dir/build.make examples/c/CMakeFiles/example_c_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/CMakeFiles/example_c_create_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_c_create_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c/CMakeFiles/example_c_create_sedml.dir/build.make examples/c/CMakeFiles/example_c_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 88%] Building C object examples/c/CMakeFiles/example_c_create_sedml.dir/create_sedml.c.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c && /usr/bin/cc -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/example_c_create_sedml.dir/create_sedml.c.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c/create_sedml.c [ 89%] Linking CXX executable create_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_c_create_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_c_create_sedml.dir/create_sedml.c.o -o create_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 89%] Built target example_c_create_sedml make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_cpp_echo_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 90%] Building CXX object examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/echo_sedml.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++ -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/example_cpp_echo_sedml.dir/echo_sedml.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c++/echo_sedml.cpp [ 91%] Linking CXX executable echo_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_cpp_echo_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_cpp_echo_sedml.dir/echo_sedml.cpp.o -o echo_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 91%] Built target example_cpp_echo_sedml make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/CMakeFiles/example_cpp_print_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_cpp_print_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 91%] Building CXX object examples/c++/CMakeFiles/example_cpp_print_sedml.dir/print_sedml.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++ -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/example_cpp_print_sedml.dir/print_sedml.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c++/print_sedml.cpp [ 92%] Linking CXX executable print_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_cpp_print_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_cpp_print_sedml.dir/print_sedml.cpp.o -o print_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 92%] Built target example_cpp_print_sedml make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/CMakeFiles/example_cpp_create_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_cpp_create_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 93%] Building CXX object examples/c++/CMakeFiles/example_cpp_create_sedml.dir/create_sedml.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++ -I/builddir/build/BUILD/libSEDML-0.4.3/examples/c++/../../include -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/example_cpp_create_sedml.dir/create_sedml.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/examples/c++/create_sedml.cpp [ 93%] Linking CXX executable create_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/example_cpp_create_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/example_cpp_create_sedml.dir/create_sedml.cpp.o -o create_sedml ../../sedml/libsedml-static.a -lz /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 93%] Built target example_cpp_create_sedml make -f examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target exmple_cs_print_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 94%] Build C# example: print_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp && /usr/bin/mcs -r:/builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/../../bindings/csharp/libsedmlcsP.dll -target:exe -out:print_sedml.exe /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp/print_sedml.cs make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 94%] Built target exmple_cs_print_sedml make -f examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target exmple_cs_echo_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 94%] Build C# example: echo_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp && /usr/bin/mcs -r:/builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/../../bindings/csharp/libsedmlcsP.dll -target:exe -out:echo_sedml.exe /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp/echo_sedml.cs make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 94%] Built target exmple_cs_echo_sedml make -f examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target exmple_cs_create_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 95%] Build C# example: create_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp && /usr/bin/mcs -r:/builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/../../bindings/csharp/libsedmlcsP.dll -target:exe -out:create_sedml.exe /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp/create_sedml.cs make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 95%] Built target exmple_cs_create_sedml make -f examples/java/CMakeFiles/example_java_print_sedml.dir/build.make examples/java/CMakeFiles/example_java_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/CMakeFiles/example_java_print_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_java_print_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/java/CMakeFiles/example_java_print_sedml.dir/build.make examples/java/CMakeFiles/example_java_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 96%] Build java example print_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java && /usr/bin/javac -cp .:"/builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/../../bindings/java/libsedmlj.jar":/builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/examples/java/print_sedml.java -source 1.5 -target 1.5 -d /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 96%] Built target example_java_print_sedml make -f examples/java/CMakeFiles/example_java_echo_sedml.dir/build.make examples/java/CMakeFiles/example_java_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/CMakeFiles/example_java_echo_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_java_echo_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/java/CMakeFiles/example_java_echo_sedml.dir/build.make examples/java/CMakeFiles/example_java_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 96%] Build java example echo_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java && /usr/bin/javac -cp .:"/builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/../../bindings/java/libsedmlj.jar":/builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/examples/java/echo_sedml.java -source 1.5 -target 1.5 -d /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 96%] Built target example_java_echo_sedml make -f examples/java/CMakeFiles/example_java_create_sedml.dir/build.make examples/java/CMakeFiles/example_java_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/CMakeFiles/example_java_create_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target example_java_create_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/java/CMakeFiles/example_java_create_sedml.dir/build.make examples/java/CMakeFiles/example_java_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 97%] Build java example create_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java && /usr/bin/javac -cp .:"/builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/../../bindings/java/libsedmlj.jar":/builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/examples/java/create_sedml.java -source 1.5 -target 1.5 -d /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java warning: [options] bootstrap class path not set in conjunction with -source 1.5 warning: [options] source value 1.5 is obsolete and will be removed in a future release warning: [options] target value 1.5 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 97%] Built target example_java_create_sedml make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/tests /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/tests /builddir/build/BUILD/libSEDML-0.4.3/build/tests/CMakeFiles/test_sedml.dir/DependInfo.cmake --color= Scanning dependencies of target test_sedml make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 98%] Building CXX object tests/CMakeFiles/test_sedml.dir/TestIssues.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/tests && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/common -I/builddir/build/BUILD/libSEDML-0.4.3/build -I/builddir/build/BUILD/libSEDML-0.4.3/tests/.. -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/test_sedml.dir/TestIssues.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/tests/TestIssues.cpp [ 99%] Building CXX object tests/CMakeFiles/test_sedml.dir/TestRunner.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/tests && /usr/bin/c++ -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -I/builddir/build/BUILD/libSEDML-0.4.3/build/sedml/common -I/builddir/build/BUILD/libSEDML-0.4.3/build -I/builddir/build/BUILD/libSEDML-0.4.3/tests/.. -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -o CMakeFiles/test_sedml.dir/TestRunner.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/tests/TestRunner.cpp [100%] Linking CXX executable test_sedml cd /builddir/build/BUILD/libSEDML-0.4.3/build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sedml.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -rdynamic CMakeFiles/test_sedml.dir/TestIssues.cpp.o CMakeFiles/test_sedml.dir/TestRunner.cpp.o -o test_sedml ../sedml/libsedml-static.a -lcheck -lsbml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [100%] Built target test_sedml make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build/CMakeFiles 0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5VXwj4 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 ++ dirname /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 + cd libSEDML-0.4.3 + make -C build DESTDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 install make: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' /usr/bin/cmake -H/builddir/build/BUILD/libSEDML-0.4.3 -B/builddir/build/BUILD/libSEDML-0.4.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build/CMakeFiles /builddir/build/BUILD/libSEDML-0.4.3/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/sedml /builddir/build/BUILD/libSEDML-0.4.3/build/sedml/CMakeFiles/sedml-static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'sedml/CMakeFiles/sedml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 32%] Built target sedml-static make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/sedml /builddir/build/BUILD/libSEDML-0.4.3/build/sedml/CMakeFiles/sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'sedml/CMakeFiles/sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 65%] Built target sedml make -f bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 65%] Built target binding_csharp_swig make -f bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 67%] Built target binding_csharp_native_lib make -f bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 68%] Built target binding_csharp_managed_lib make -f bindings/java/CMakeFiles/binding_java_swig.dir/build.make bindings/java/CMakeFiles/binding_java_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/java/CMakeFiles/binding_java_swig.dir/build.make bindings/java/CMakeFiles/binding_java_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/java/CMakeFiles/binding_java_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 69%] Built target binding_java_swig make -f bindings/java/CMakeFiles/binding_java_jar.dir/build.make bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/java/CMakeFiles/binding_java_jar.dir/build.make bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/java/CMakeFiles/binding_java_jar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 70%] Built target binding_java_jar make -f bindings/java/CMakeFiles/binding_java_lib.dir/build.make bindings/java/CMakeFiles/binding_java_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/java/CMakeFiles/binding_java_lib.dir/build.make bindings/java/CMakeFiles/binding_java_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/java/CMakeFiles/binding_java_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 72%] Built target binding_java_lib make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 73%] Built target binding_python_swig make -f bindings/python/CMakeFiles/binding_python_lib.dir/build.make bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/python/CMakeFiles/binding_python_lib.dir/build.make bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 75%] Built target binding_python_lib make -f bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 76%] Swig Perl bindings source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl -I/usr/include/ -I/usr/include/ -c++ -perl5 -proxy -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/LibSEDML_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/libsedml.i /usr/include/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. /usr/include/sbml/xml/XMLConstructorException.h:68: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 76%] Built target binding_perl_swig make -f bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 77%] Swig Perl bindings source cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../swig/ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/../../ -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl -I/usr/include/ -I/usr/include/ -c++ -perl5 -proxy -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE -DLIBNUML_CPP_NAMESPACE_BEGIN -DLIBNUML_CPP_NAMESPACE_END -DLIBNUML_CPP_NAMESPACE_QUALIFIER -DLIBNUML_CPP_NAMESPACE_USE -o /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/LibSEDML_wrap.cpp /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/libsedml.i /usr/include/sbml/xml/XMLInputStream.h:232: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../../sedml/SedConstructorException.h:67: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/sbml/math/ASTNode.h:179: Warning 401: Nothing known about base class 'ASTBase'. Ignored. /usr/include/sbml/xml/XMLConstructorException.h:68: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. /usr/include/numl/NMBase.h:60: Warning 401: Nothing known about base class 'std::invalid_argument'. Ignored. [ 78%] Building CXX object bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/c++ -DLIBSEDML_STATIC -DLINUX -DPACKAGE_NAME=\"libsedml\" -DPACKAGE_VERSION=\"0.4.3\" -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../.. -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl -I/builddir/build/BUILD/libSEDML-0.4.3/bindings/perl/../swig -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -fPIC -o CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o -c /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl/LibSEDML.cpp [ 78%] Linking CXX shared module LibSEDML.so cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wno-error=unused-value -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -fno-strict-aliasing -fPIC -I/usr/include/libxml2 -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,now -lpthread -shared -o LibSEDML.so CMakeFiles/binding_perl_lib.dir/LibSEDML.cpp.o ../../sedml/libsedml-static.a -lperl /usr/lib64/libsbml.so -lnuml -lnuml -lsbml -lxml2 -lbz2 -lz -lm -ldl make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 78%] Built target binding_perl_lib make -f bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 79%] Built target binding_ruby_swig make -f bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 81%] Built target binding_ruby_lib make -f bindings/r/CMakeFiles/binding_r_swig.dir/build.make bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/r/CMakeFiles/binding_r_swig.dir/build.make bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/r/CMakeFiles/binding_r_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 82%] Built target binding_r_swig make -f bindings/r/CMakeFiles/binding_r_lib.dir/build.make bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/r/CMakeFiles/binding_r_lib.dir/build.make bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'bindings/r/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 84%] Built target binding_r_lib make -f bindings/r/CMakeFiles/binding_r_package.dir/build.make bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f bindings/r/CMakeFiles/binding_r_package.dir/build.make bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 84%] Create R Package (64bit) cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML.R" -P /builddir/build/BUILD/libSEDML-0.4.3/bindings/r/patch-swig-file.cmake DONE cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML.so /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML/inst/libs cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML.R /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r/libSEDML/R cd /builddir/build/BUILD/libSEDML-0.4.3/build/bindings/r && /usr/bin/R CMD INSTALL --build --no-libs --no-test-load --no-clean-on-error --no-multiarch libSEDML -l temp * installing *source* package 'libSEDML' ... ** R ** inst ** preparing package for lazy loading ** help No man pages found in package 'libSEDML' *** installing help indices ** building package indices * creating tarball packaged installation of 'libSEDML' as 'libSEDML_0.4.3_R_x86_64-redhat-linux-gnu.tar.gz' * DONE (libSEDML) make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 85%] Built target binding_r_package make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/CMakeFiles/example_c_echo_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/c/CMakeFiles/example_c_echo_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 86%] Built target example_c_echo_sedml make -f examples/c/CMakeFiles/example_c_print_sedml.dir/build.make examples/c/CMakeFiles/example_c_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/CMakeFiles/example_c_print_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c/CMakeFiles/example_c_print_sedml.dir/build.make examples/c/CMakeFiles/example_c_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/c/CMakeFiles/example_c_print_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 88%] Built target example_c_print_sedml make -f examples/c/CMakeFiles/example_c_create_sedml.dir/build.make examples/c/CMakeFiles/example_c_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c/CMakeFiles/example_c_create_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c/CMakeFiles/example_c_create_sedml.dir/build.make examples/c/CMakeFiles/example_c_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/c/CMakeFiles/example_c_create_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 89%] Built target example_c_create_sedml make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 91%] Built target example_cpp_echo_sedml make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/CMakeFiles/example_cpp_print_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 92%] Built target example_cpp_print_sedml make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build/examples/c++/CMakeFiles/example_cpp_create_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 93%] Built target example_cpp_create_sedml make -f examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/csharp/CMakeFiles/exmple_cs_print_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 94%] Built target exmple_cs_print_sedml make -f examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/csharp/CMakeFiles/exmple_cs_echo_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 94%] Built target exmple_cs_echo_sedml make -f examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp /builddir/build/BUILD/libSEDML-0.4.3/build/examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/build.make examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/csharp/CMakeFiles/exmple_cs_create_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 95%] Built target exmple_cs_create_sedml make -f examples/java/CMakeFiles/example_java_print_sedml.dir/build.make examples/java/CMakeFiles/example_java_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/CMakeFiles/example_java_print_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/java/CMakeFiles/example_java_print_sedml.dir/build.make examples/java/CMakeFiles/example_java_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/java/CMakeFiles/example_java_print_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 96%] Built target example_java_print_sedml make -f examples/java/CMakeFiles/example_java_echo_sedml.dir/build.make examples/java/CMakeFiles/example_java_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/CMakeFiles/example_java_echo_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/java/CMakeFiles/example_java_echo_sedml.dir/build.make examples/java/CMakeFiles/example_java_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/java/CMakeFiles/example_java_echo_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 96%] Built target example_java_echo_sedml make -f examples/java/CMakeFiles/example_java_create_sedml.dir/build.make examples/java/CMakeFiles/example_java_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java /builddir/build/BUILD/libSEDML-0.4.3/build/examples/java/CMakeFiles/example_java_create_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f examples/java/CMakeFiles/example_java_create_sedml.dir/build.make examples/java/CMakeFiles/example_java_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'examples/java/CMakeFiles/example_java_create_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [ 97%] Built target example_java_create_sedml make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' cd /builddir/build/BUILD/libSEDML-0.4.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/tests /builddir/build/BUILD/libSEDML-0.4.3/build /builddir/build/BUILD/libSEDML-0.4.3/build/tests /builddir/build/BUILD/libSEDML-0.4.3/build/tests/CMakeFiles/test_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[2]: Nothing to be done for 'tests/CMakeFiles/test_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' [100%] Built target test_sedml make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/common.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/extern.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/libsedml-config.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/operationReturnValues.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/sedmlfwd.h -- Installing: 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-- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedReader.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedRemoveXML.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedRepeatedTask.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedReport.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSetValue.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSimulation.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSlice.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSteadyState.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSubTask.h -- Installing: 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Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/create_sedml.c -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/echo_sedml.c -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/print_sedml.c -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/README.md -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/README.md -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/create_sedml.cpp -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/echo_sedml.cpp -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/print_sedml.cpp -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/csharp/create_sedml.cs -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/csharp/echo_sedml.cs -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/csharp/print_sedml.cs -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/csharp/README.md -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/java/create_sedml.java -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/java/echo_sedml.java -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/java/print_sedml.java -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/java/README.md -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/create_sedml.py -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/create_sedml2.py -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/echo_sedml.py -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/print_sedml.py -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/README.md make: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build' + make -C build2 DESTDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 install make: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' /usr/bin/cmake -H/builddir/build/BUILD/libSEDML-0.4.3 -B/builddir/build/BUILD/libSEDML-0.4.3/build2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build2/CMakeFiles /builddir/build/BUILD/libSEDML-0.4.3/build2/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/CMakeFiles/sedml-static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f sedml/CMakeFiles/sedml-static.dir/build.make sedml/CMakeFiles/sedml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'sedml/CMakeFiles/sedml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 42%] Built target sedml-static make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml /builddir/build/BUILD/libSEDML-0.4.3/build2/sedml/CMakeFiles/sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f sedml/CMakeFiles/sedml.dir/build.make sedml/CMakeFiles/sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'sedml/CMakeFiles/sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 83%] Built target sedml make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f bindings/python/CMakeFiles/binding_python_swig.dir/build.make bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 84%] Built target binding_python_swig make -f bindings/python/CMakeFiles/binding_python_lib.dir/build.make bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python /builddir/build/BUILD/libSEDML-0.4.3/build2/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f bindings/python/CMakeFiles/binding_python_lib.dir/build.make bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 86%] Built target binding_python_lib make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/CMakeFiles/example_c_echo_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c/CMakeFiles/example_c_echo_sedml.dir/build.make examples/c/CMakeFiles/example_c_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'examples/c/CMakeFiles/example_c_echo_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 88%] Built target example_c_echo_sedml make -f examples/c/CMakeFiles/example_c_print_sedml.dir/build.make examples/c/CMakeFiles/example_c_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/CMakeFiles/example_c_print_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c/CMakeFiles/example_c_print_sedml.dir/build.make examples/c/CMakeFiles/example_c_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'examples/c/CMakeFiles/example_c_print_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 89%] Built target example_c_print_sedml make -f examples/c/CMakeFiles/example_c_create_sedml.dir/build.make examples/c/CMakeFiles/example_c_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c/CMakeFiles/example_c_create_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c/CMakeFiles/example_c_create_sedml.dir/build.make examples/c/CMakeFiles/example_c_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'examples/c/CMakeFiles/example_c_create_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 91%] Built target example_c_create_sedml make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'examples/c++/CMakeFiles/example_cpp_echo_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 93%] Built target example_cpp_echo_sedml make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/CMakeFiles/example_cpp_print_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'examples/c++/CMakeFiles/example_cpp_print_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 95%] Built target example_cpp_print_sedml make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++ /builddir/build/BUILD/libSEDML-0.4.3/build2/examples/c++/CMakeFiles/example_cpp_create_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build.make examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'examples/c++/CMakeFiles/example_cpp_create_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [ 97%] Built target example_cpp_create_sedml make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' cd /builddir/build/BUILD/libSEDML-0.4.3/build2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSEDML-0.4.3 /builddir/build/BUILD/libSEDML-0.4.3/tests /builddir/build/BUILD/libSEDML-0.4.3/build2 /builddir/build/BUILD/libSEDML-0.4.3/build2/tests /builddir/build/BUILD/libSEDML-0.4.3/build2/tests/CMakeFiles/test_sedml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make -f tests/CMakeFiles/test_sedml.dir/build.make tests/CMakeFiles/test_sedml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[2]: Nothing to be done for 'tests/CMakeFiles/test_sedml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' [100%] Built target test_sedml make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSEDML-0.4.3/build2/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/common.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/extern.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/libsedml-config.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/operationReturnValues.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/sedmlfwd.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedAddXML.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedAlgorithm.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedAlgorithmParameter.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedBase.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedChange.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedChangeAttribute.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedChangeXML.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedComputeChange.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedConstructorException.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedCurve.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedDataDescription.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedDataGenerator.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedDataSet.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedDataSource.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedDocument.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedError.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedErrorLog.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedErrorTable.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedFunctionalRange.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedListOf.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedModel.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedNamespaces.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedOneStep.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedOutput.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedParameter.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedPlot2D.h -- Up-to-date: 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/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSteadyState.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSubTask.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedSurface.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedTask.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedTypeCodes.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedTypes.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedUniformRange.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedUniformTimeCourse.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedVariable.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedVectorRange.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedVisitor.h -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/SedWriter.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/libsedml-version.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/libsedml-config-common.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/libsedml-namespace.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/include/sedml/common/libsedml-package.h -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/libsedml.so.0.4.3 -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/libsedml.so.0 -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/libsedml.so -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/cmake/sedml-config.cmake -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/cmake/sedml-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/cmake/sedml-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/libsedml-static.a -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/cmake/sedml-static-config.cmake -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/cmake/sedml-static-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/cmake/sedml-static-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/python3.5/site-packages/libsedml/_libsedml.so -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/python3.5/site-packages/libsedml.pth -- Installing: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/python3.5/site-packages/libsedml/libsedml.py -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/README.md -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/create_sedml.c -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/echo_sedml.c -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/print_sedml.c -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c/README.md -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/README.md -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/create_sedml.cpp -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/echo_sedml.cpp -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/c++/print_sedml.cpp -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/create_sedml.py -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/create_sedml2.py -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/echo_sedml.py -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/print_sedml.py -- Up-to-date: /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml/examples/python/README.md make: Leaving directory '/builddir/build/BUILD/libSEDML-0.4.3/build2' + mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/libsedml + mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/R/library build/bindings/r/libSEDML_0.4.3_R_x86_64-redhat-linux-gnu.tar.gz * installing *binary* package 'libSEDML' ... * DONE (libSEDML) + test -d SEDML/src + rm -rf /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/R/library/SEDML/R.css + ln -sf /usr/lib64/libSEDML.so /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/R/library/libSEDML/libs/libSEDML.so + find /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 -name '*.la' -delete + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/libSEDML-0.4.3 extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/perl5/vendor_perl/auto/libSEDML/LibSEDML.so extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/python2.7/site-packages/libsedml/_libsedml.so extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/libsedml.so.0.4.3 extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/libSEDML.so extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/libsedml/libsedmlj.so extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/ruby/vendor_ruby/libSEDML.so extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/python3.5/site-packages/libsedml/_libsedml.so extracting debug info from /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib/mono/libsedmlcsP/libsedmlcs.so /usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. symlinked /usr/lib/debug/usr/lib64/libsedml.so.0.4.3.debug to /usr/lib/debug/usr/lib64/libsedml.so.0.debug symlinked /usr/lib/debug/usr/lib64/libSEDML.so.debug to /usr/lib/debug/usr/lib64/R/library/libSEDML/libs/libSEDML.so.debug symlinked /usr/lib/debug/usr/lib64/libsedml.so.0.4.3.debug to /usr/lib/debug/usr/lib64/libsedml.so.debug 58370 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib64/python3.5 using /usr/bin/python3.5 Bytecompiling .py files below /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/lib/debug/usr/lib64/python3.5 using /usr/bin/python3.5 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.4lFNuy + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + cd build + /usr/bin/ctest -V --force-new-ctest-process --stop-time 2000 UpdateCTestConfiguration from :/builddir/build/BUILD/libSEDML-0.4.3/build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/libSEDML-0.4.3/build/DartConfiguration.tcl Test project /builddir/build/BUILD/libSEDML-0.4.3/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_sedml_run 1: Test command: /builddir/build/BUILD/libSEDML-0.4.3/build/tests/test_sedml 1: Test timeout computed to be: 9.99988e+06 1: Testing issues reported using: 1: libSBML : 5.13.0 (using new ASTnode implementation) 1: libSEDML : 0.4.3 1: 1: Running suite(s): SedMLIssues 1: 100%: Checks: 1, Failures: 0, Errors: 0 1/1 Test #1: test_sedml_run ................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.02 sec + exit 0 Processing files: libsedml-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.jFqBL2 + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.U9xp3w + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: libsedml = 1:0.4.3-4.fc25 libsedml(x86-64) = 1:0.4.3-4.fc25 libsedml.so.0()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libnuml.so.1()(64bit) libpthread.so.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsedml-devel-0.4.3-4.fc25.x86_64 Provides: libsedml-devel = 1:0.4.3-4.fc25 libsedml-devel(x86-64) = 1:0.4.3-4.fc25 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsedml.so.0()(64bit) Processing files: libsedml-static-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.E0FCJ1 + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.QsQUqw + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: libsedml-static = 1:0.4.3-4.fc25 libsedml-static(x86-64) = 1:0.4.3-4.fc25 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python2-libsedml-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.eq9Vg1 + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.6YJ17v + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: python-libsedml = 1:0.4.3-4.fc25 python-libsedml(x86-64) = 1:0.4.3-4.fc25 python2-libsedml = 1:0.4.3-4.fc25 python2-libsedml(x86-64) = 1:0.4.3-4.fc25 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libnuml.so.1()(64bit) libpthread.so.0()(64bit) libpython2.7.so.1.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) python(abi) = 2.7 rtld(GNU_HASH) Obsoletes: python-libsedml < 1:0.4.3-4.fc25 Processing files: python3-libsedml-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dRvTu1 + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.FxWGSw + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: python3-libsedml = 1:0.4.3-4.fc25 python3-libsedml(x86-64) = 1:0.4.3-4.fc25 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libnuml.so.1()(64bit) libpthread.so.0()(64bit) libpython3.5m.so.1.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) python(abi) = 3.5 rtld(GNU_HASH) Processing files: java-SEDML-0.4.3-4.fc25.x86_64 [INFO osgi.prov] input: ['/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/java/libsedmlj.jar'] [INFO osgi.req] input: ['/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/java/libsedmlj.jar'] Provides: java-SEDML = 1:0.4.3-4.fc25 java-SEDML(x86-64) = 1:0.4.3-4.fc25 libsedmlj.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libnuml.so.1()(64bit) libpthread.so.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: perl-SEDML-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Gob0o3 + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.3s1mWz + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: perl(LibSEDML) perl(LibSEDML::ASTNode) perl(LibSEDML::ASTNodeList) perl(LibSEDML::AtomicDescription) perl(LibSEDML::AtomicValue) perl(LibSEDML::CVTerm) perl(LibSEDML::CVTermList) perl(LibSEDML::CompositeDescription) perl(LibSEDML::CompositeValue) perl(LibSEDML::Date) perl(LibSEDML::DateList) perl(LibSEDML::Dimension) perl(LibSEDML::DimensionDescription) perl(LibSEDML::DoubleStdVector) perl(LibSEDML::L3ParserSettings) perl(LibSEDML::MathML) perl(LibSEDML::Model) perl(LibSEDML::ModelCreatorList) perl(LibSEDML::NMBase) perl(LibSEDML::NUMLConstructorException) perl(LibSEDML::NUMLDocument) perl(LibSEDML::NUMLError) perl(LibSEDML::NUMLErrorLog) perl(LibSEDML::NUMLList) perl(LibSEDML::NUMLNamespaces) perl(LibSEDML::NUMLReader) perl(LibSEDML::NUMLWriter) perl(LibSEDML::OFStream) perl(LibSEDML::ONTOLOGY) perl(LibSEDML::OStream) perl(LibSEDML::OStringStream) perl(LibSEDML::OntologyTerm) perl(LibSEDML::OntologyTerms) perl(LibSEDML::ResultComponent) perl(LibSEDML::ResultComponents) perl(LibSEDML::SBMLNamespaces) perl(LibSEDML::SBase) perl(LibSEDML::SBaseList) perl(LibSEDML::SedAddXML) perl(LibSEDML::SedAlgorithm) perl(LibSEDML::SedAlgorithmParameter) perl(LibSEDML::SedBase) perl(LibSEDML::SedBaseList) perl(LibSEDML::SedChange) perl(LibSEDML::SedChangeAttribute) perl(LibSEDML::SedChangeXML) perl(LibSEDML::SedComputeChange) perl(LibSEDML::SedConstructorException) perl(LibSEDML::SedCurve) perl(LibSEDML::SedDataDescription) perl(LibSEDML::SedDataGenerator) perl(LibSEDML::SedDataSet) perl(LibSEDML::SedDataSource) perl(LibSEDML::SedDocument) perl(LibSEDML::SedError) perl(LibSEDML::SedErrorLog) perl(LibSEDML::SedErrorStdVector) perl(LibSEDML::SedFunctionalRange) perl(LibSEDML::SedListOf) perl(LibSEDML::SedListOfAlgorithmParameters) perl(LibSEDML::SedListOfChanges) perl(LibSEDML::SedListOfCurves) perl(LibSEDML::SedListOfDataDescriptions) perl(LibSEDML::SedListOfDataGenerators) perl(LibSEDML::SedListOfDataSets) perl(LibSEDML::SedListOfDataSources) perl(LibSEDML::SedListOfFunctionalRanges) perl(LibSEDML::SedListOfModels) perl(LibSEDML::SedListOfOutputs) perl(LibSEDML::SedListOfParameters) perl(LibSEDML::SedListOfRanges) perl(LibSEDML::SedListOfSimulations) perl(LibSEDML::SedListOfSlices) perl(LibSEDML::SedListOfSubTasks) perl(LibSEDML::SedListOfSurfaces) perl(LibSEDML::SedListOfTaskChanges) perl(LibSEDML::SedListOfTasks) perl(LibSEDML::SedListOfVariables) perl(LibSEDML::SedModel) perl(LibSEDML::SedNamespaces) perl(LibSEDML::SedNamespacesList) perl(LibSEDML::SedOneStep) perl(LibSEDML::SedOutput) perl(LibSEDML::SedParameter) perl(LibSEDML::SedPlot2D) perl(LibSEDML::SedPlot3D) perl(LibSEDML::SedRange) perl(LibSEDML::SedReader) perl(LibSEDML::SedRemoveXML) perl(LibSEDML::SedRepeatedTask) perl(LibSEDML::SedReport) perl(LibSEDML::SedSetValue) perl(LibSEDML::SedSimulation) perl(LibSEDML::SedSlice) perl(LibSEDML::SedSteadyState) perl(LibSEDML::SedSubTask) perl(LibSEDML::SedSurface) perl(LibSEDML::SedTask) perl(LibSEDML::SedUniformRange) perl(LibSEDML::SedUniformTimeCourse) perl(LibSEDML::SedVariable) perl(LibSEDML::SedVectorRange) perl(LibSEDML::SedWriter) perl(LibSEDML::Tuple) perl(LibSEDML::TupleDescription) perl(LibSEDML::XMLAttributes) perl(LibSEDML::XMLConstructorException) perl(LibSEDML::XMLError) perl(LibSEDML::XMLErrorLog) perl(LibSEDML::XMLInputStream) perl(LibSEDML::XMLNamespaces) perl(LibSEDML::XMLNode) perl(LibSEDML::XMLOutputStream) perl(LibSEDML::XMLOwningOutputFileStream) perl(LibSEDML::XMLOwningOutputStringStream) perl(LibSEDML::XMLToken) perl(LibSEDML::XMLTriple) perl(LibSEDML::XmlErrorStdVector) perl(LibSEDMLc) perl-SEDML = 1:0.4.3-4.fc25 perl-SEDML(x86-64) = 1:0.4.3-4.fc25 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libnuml.so.1()(64bit) libperl.so.5.24()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) perl(DynaLoader) perl(Exporter) perl(base) perl(vars) rtld(GNU_HASH) Processing files: ruby-SEDML-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.B44WO6 + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.0oHyID + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: libSEDML.so()(64bit) ruby(SBML) = 0.4.3 ruby-SEDML = 1:0.4.3-4.fc25 ruby-SEDML(x86-64) = 1:0.4.3-4.fc25 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libnuml.so.1()(64bit) libpthread.so.0()(64bit) libruby.so.2.3()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-SEDML-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9h4iKa + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Z575MH + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: R-SEDML = 1:0.4.3-4.fc25 R-SEDML(x86-64) = 1:0.4.3-4.fc25 libSEDML.so()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libnuml.so.1()(64bit) libpthread.so.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsedml-sharp-0.4.3-4.fc25.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tcsc3e + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + DOCDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + cp -pr NEWS.md README.md /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/doc/libsedml + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.WPZpkM + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + LICENSEDIR=/builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64/usr/share/licenses/libsedml + exit 0 Provides: libsedml-sharp = 1:0.4.3-4.fc25 libsedml-sharp(x86-64) = 1:0.4.3-4.fc25 libsedmlcs.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libnuml.so.1()(64bit) libpthread.so.0()(64bit) libsbml.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsedml-debuginfo-0.4.3-4.fc25.x86_64 Provides: libsedml-debuginfo = 1:0.4.3-4.fc25 libsedml-debuginfo(x86-64) = 1:0.4.3-4.fc25 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 Wrote: /builddir/build/RPMS/libsedml-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/libsedml-devel-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/libsedml-static-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/python2-libsedml-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsedml-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/java-SEDML-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/perl-SEDML-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-SEDML-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/R-SEDML-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/libsedml-sharp-0.4.3-4.fc25.x86_64.rpm Wrote: /builddir/build/RPMS/libsedml-debuginfo-0.4.3-4.fc25.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.OpAanS + umask 022 + cd /builddir/build/BUILD + cd libSEDML-0.4.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsedml-0.4.3-4.fc25.x86_64 + exit 0 Child return code was: 0