Mock Version: 1.2.7
Mock Version: 1.2.7
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/f22-build-3076761-463587/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}gid=425user='mockbuild'timeout=86400logger=<mockbuild.trace_decorator.getLog object at 0x7fc5f9199610>uid=1000)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False
warning: Could not canonicalize hostname: buildvm-05.phx2.fedoraproject.org
Building target platforms: i686
Building for target i686
Wrote: /builddir/build/SRPMS/R-3.1.3-1.fc22.src.rpm
Child return code was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps  /builddir/build/SPECS/R.spec '], chrootPath='/var/lib/mock/f22-build-3076761-463587/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}gid=425user='mockbuild'timeout=86400logger=<mockbuild.trace_decorator.getLog object at 0x7fc5f9199610>uid=1000)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps  /builddir/build/SPECS/R.spec '] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False
Building target platforms: i686
Building for target i686
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.L2y3c4
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf R-3.1.3
+ /usr/bin/gzip -dc /builddir/build/SOURCES/R-3.1.3.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd R-3.1.3
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ cat
+ chmod +x /builddir/build/BUILD/R-3.1.3/R-prov
+ cat
+ chmod +x /builddir/build/BUILD/R-3.1.3/R-req
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6T1el5
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-3.1.3
+ echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library:/usr/share/R/library'\''}'
+ export R_PDFVIEWER=/usr/bin/xdg-open
+ R_PDFVIEWER=/usr/bin/xdg-open
+ export R_PRINTCMD=lpr
+ R_PRINTCMD=lpr
+ export R_BROWSER=/usr/bin/xdg-open
+ R_BROWSER=/usr/bin/xdg-open
+ case "i686" in
+ export 'CC=gcc -m32'
+ CC='gcc -m32'
+ export 'CXX=g++ -m32'
+ CXX='g++ -m32'
+ export 'F77=gfortran -m32'
+ F77='gfortran -m32'
+ export 'FC=gfortran -m32'
+ FC='gfortran -m32'
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
+ '[' 1 = 1 ']'
++ find . -name config.guess -o -name config.sub
+ for i in '$(find . -name config.guess -o -name config.sub)'
++ basename ./tools/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./tools/config.sub
++ basename ./tools/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub
+ for i in '$(find . -name config.guess -o -name config.sub)'
++ basename ./tools/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./tools/config.guess
++ basename ./tools/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess
+ '[' 1 = 1 ']'
+ '[' x '!=' x ']'
+ ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-system-tre --with-system-zlib --with-system-bzlib --with-system-pcre --with-lapack --with-blas --with-tcl-config=/usr/lib/tclConfig.sh --with-tk-config=/usr/lib/tkConfig.sh --enable-R-shlib --enable-prebuilt-html rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R
configure: WARNING: unrecognized options: --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-dependency-tracking
+ cat CONFIGURE.log
+ grep -A30 'R is now' -
+ make
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/m4'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/m4'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/tools'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tools'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/doc'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/doc/html'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/doc/html'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/doc/manual'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/etc'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/etc'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/share'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/share'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/scripts'
creating src/scripts/R.fe
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/scripts'
mkdir -p -- ../../bin
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/scripts'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/scripts'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/include'
mkdir -p -- ../../include
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/include/R_ext'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/include'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/extra'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/extra'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/appl'
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c integrate.c -o integrate.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c interv.c -o interv.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c maxcol.c -o maxcol.o
In file included from /usr/include/math.h:26:0,
                 from ../../src/include/R_ext/Arith.h:37,
                 from maxcol.c:33:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c optim.c -o optim.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pretty.c -o pretty.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c uncmin.c -o uncmin.o
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dchdc.f -o dchdc.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dpbfa.f -o dpbfa.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dpbsl.f -o dpbsl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dpoco.f -o dpoco.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dpodi.f -o dpodi.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dpofa.f -o dpofa.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dposl.f -o dposl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dqrdc.f -o dqrdc.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dqrdc2.f -o dqrdc2.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dqrls.f -o dqrls.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dqrsl.f -o dqrsl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dqrutl.f -o dqrutl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dsvdc.f -o dsvdc.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dtrco.f -o dtrco.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dtrsl.f -o dtrsl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
rm -f libappl.a
ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/appl'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/appl'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/nmath'
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mlutils.c -o mlutils.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c d1mach.c -o d1mach.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c i1mach.c -o i1mach.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fmax2.c -o fmax2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fmin2.c -o fmin2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fprec.c -o fprec.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fround.c -o fround.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ftrunc.c -o ftrunc.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sign.c -o sign.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fsign.c -o fsign.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c imax2.c -o imax2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c imin2.c -o imin2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chebyshev.c -o chebyshev.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c log1p.c -o log1p.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c expm1.c -o expm1.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lgammacor.c -o lgammacor.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gammalims.c -o gammalims.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c stirlerr.c -o stirlerr.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bd0.c -o bd0.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gamma.c -o gamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lgamma.c -o lgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gamma_cody.c -o gamma_cody.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c beta.c -o beta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lbeta.c -o lbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c polygamma.c -o polygamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cospi.c -o cospi.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_i.c -o bessel_i.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_j.c -o bessel_j.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_k.c -o bessel_k.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_y.c -o bessel_y.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c choose.c -o choose.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c snorm.c -o snorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sexp.c -o sexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgamma.c -o dgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pgamma.c -o pgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qgamma.c -o qgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rgamma.c -o rgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dbeta.c -o dbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pbeta.c -o pbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qbeta.c -o qbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rbeta.c -o rbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dunif.c -o dunif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c punif.c -o punif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qunif.c -o qunif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c runif.c -o runif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnorm.c -o dnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnorm.c -o pnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnorm.c -o qnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnorm.c -o rnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dlnorm.c -o dlnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plnorm.c -o plnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qlnorm.c -o qlnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rlnorm.c -o rlnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c df.c -o df.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pf.c -o pf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qf.c -o qf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rf.c -o rf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnf.c -o dnf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dt.c -o dt.o
dt.c: In function 'Rf_dt':
dt.c:80:44: warning: 'ax' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double I_sqrt_ = (lrg_x2n ? sqrt(n)/ax : exp(-l_x2n));
                                            ^
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pt.c -o pt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qt.c -o qt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rt.c -o rt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnt.c -o dnt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dchisq.c -o dchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pchisq.c -o pchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qchisq.c -o qchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rchisq.c -o rchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnchisq.c -o rnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dbinom.c -o dbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pbinom.c -o pbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qbinom.c -o qbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rbinom.c -o rbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rmultinom.c -o rmultinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dcauchy.c -o dcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pcauchy.c -o pcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qcauchy.c -o qcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rcauchy.c -o rcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dexp.c -o dexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pexp.c -o pexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qexp.c -o qexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rexp.c -o rexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgeom.c -o dgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pgeom.c -o pgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qgeom.c -o qgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rgeom.c -o rgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dhyper.c -o dhyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c phyper.c -o phyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qhyper.c -o qhyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rhyper.c -o rhyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnbinom.c -o dnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnbinom.c -o pnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnbinom.c -o qnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnbinom.c -o rnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dpois.c -o dpois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ppois.c -o ppois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qpois.c -o qpois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpois.c -o rpois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dweibull.c -o dweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pweibull.c -o pweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qweibull.c -o qweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rweibull.c -o rweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dlogis.c -o dlogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plogis.c -o plogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qlogis.c -o qlogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rlogis.c -o rlogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnchisq.c -o dnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnchisq.c -o pnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnchisq.c -o qnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnbeta.c -o dnbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnbeta.c -o pnbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnbeta.c -o qnbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnf.c -o pnf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnt.c -o pnt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnf.c -o qnf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnt.c -o qnt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ptukey.c -o ptukey.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qtukey.c -o qtukey.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c toms708.c -o toms708.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c wilcox.c -o wilcox.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/nmath'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/unix'
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Rembedded.c -o Rembedded.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dynload.c -o dynload.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c system.c -o system.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sys-unix.c -o sys-unix.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sys-std.c -o sys-std.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c X11.c -o X11.o
rm -rf libunix.a
ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/unix'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/unix'
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -Wl,-z,relro  -DR_HOME='"/builddir/build/BUILD/R-3.1.3"' \
  -o Rscript ./Rscript.c
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/unix'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/main'
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c CommandLineArgs.c -o CommandLineArgs.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Rdynload.c -o Rdynload.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Renviron.c -o Renviron.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c RNG.c -o RNG.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agrep.c -o agrep.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c apply.c -o apply.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c arithmetic.c -o arithmetic.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c array.c -o array.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c attrib.c -o attrib.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bind.c -o bind.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c builtin.c -o builtin.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c character.c -o character.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coerce.c -o coerce.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c colors.c -o colors.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c complex.c -o complex.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c connections.c -o connections.o
connections.c: In function 'do_readbin':
connections.c:4006:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
        INTEGER(ans)[i] = (int)*((short *)buf);
        ^
connections.c:4008:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
        INTEGER(ans)[i] = (int)*((unsigned short *)buf);
        ^
connections.c:4016:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    INTEGER(ans)[i] = (int)*((_lli_t *)buf);
    ^
connections.c:4032:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    REAL(ans)[i] = (double)*((float *)buf);
    ^
connections.c:4036:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    REAL(ans)[i] = (double)*((long double *)buf);
    ^
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c context.c -o context.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cum.c -o cum.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dcf.c -o dcf.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c datetime.c -o datetime.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c debug.c -o debug.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c deparse.c -o deparse.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c devices.c -o devices.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dotcode.c -o dotcode.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dounzip.c -o dounzip.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dstruct.c -o dstruct.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c duplicate.c -o duplicate.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c edit.c -o edit.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c engine.c -o engine.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c envir.c -o envir.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c errors.c -o errors.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c eval.c -o eval.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c format.c -o format.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gevents.c -o gevents.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gram.c -o gram.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gram-ex.c -o gram-ex.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c graphics.c -o graphics.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c grep.c -o grep.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c identical.c -o identical.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c inlined.c -o inlined.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c inspect.c -o inspect.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c internet.c -o internet.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c iosupport.c -o iosupport.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lapack.c -o lapack.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c list.c -o list.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c localecharset.c -o localecharset.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c logic.c -o logic.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c main.c -o main.o
main.c: In function 'dummy_ii':
main.c:1594:12: warning: function returns address of local variable [-Wreturn-local-addr]
     return (uintptr_t) &ii;
            ^
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mapply.c -o mapply.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c match.c -o match.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c memory.c -o memory.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c names.c -o names.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c objects.c -o objects.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c options.c -o options.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c paste.c -o paste.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c platform.c -o platform.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plot.c -o plot.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plot3d.c -o plot3d.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plotmath.c -o plotmath.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c print.c -o print.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c printarray.c -o printarray.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c printvector.c -o printvector.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c printutils.c -o printutils.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qsort.c -o qsort.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c random.c -o random.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c raw.c -o raw.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c registration.c -o registration.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c relop.c -o relop.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rlocale.c -o rlocale.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c saveload.c -o saveload.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c scan.c -o scan.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c seq.c -o seq.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c serialize.c -o serialize.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sort.c -o sort.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c source.c -o source.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c split.c -o split.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sprintf.c -o sprintf.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c startup.c -o startup.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c subassign.c -o subassign.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c subscript.c -o subscript.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c subset.c -o subset.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c summary.c -o summary.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sysutils.c -o sysutils.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c times.c -o times.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c unique.c -o unique.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c util.c -o util.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c version.c -o version.o
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c vfonts.c -o vfonts.o
gfortran -m32  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c xxxpr.f -o xxxpr.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -shared -fopenmp -Wl,-z,relro   -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`         -lblas -lgfortran -lm -lquadmath   -lreadline  -ltre -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n  
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/main'
mkdir -p -- /builddir/build/BUILD/R-3.1.3/bin/exec
mkdir -p -- /builddir/build/BUILD/R-3.1.3/lib
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/main'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/main'
gcc -m32       -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Rmain.c -o Rmain.o
gcc -m32 -Wl,--export-dynamic -fopenmp  -L../../lib -Wl,-z,relro  -o R.bin Rmain.o  -lR 
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/main'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/main'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/main'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -fvisibility=hidden -c internet.c -o internet.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -fvisibility=hidden -c sock.c -o sock.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -m32 -shared -L../../../lib -Wl,-z,relro  -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -lR  
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
mkdir -p -- /builddir/build/BUILD/R-3.1.3/modules
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/lapack'
making Lapack.d from Lapack.c
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/lapack'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Lapack.c -o Lapack.o
gcc -m32 -shared -L../../../lib -Wl,-z,relro  -o lapack.so  Lapack.o  -lR  -llapack -lblas -lgfortran -lm -lquadmath
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/lapack'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/lapack'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/lapack'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/lapack'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/vfonts'
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/vfonts'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c g_alab_her.c -o g_alab_her.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c g_cntrlify.c -o g_cntrlify.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c g_fontdb.c -o g_fontdb.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c g_her_glyph.c -o g_her_glyph.o
gcc -m32 -shared -L../../../lib -Wl,-z,relro  -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -lR -lm 
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/vfonts'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/vfonts'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/vfonts'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/vfonts'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/X11'
gcc -m32 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c devX11.c -o devX11.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rotated.c -o rotated.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rbitmap.c -o rbitmap.o
gcc -m32 -shared -L../../../lib -Wl,-z,relro  -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext  -lX11 -lXt -lXmu  -ltiff -ljpeg -lpng -lz -lR -lm 
gcc -m32 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dataentry.c -o dataentry.o
gcc -m32 -shared -L../../../lib -Wl,-z,relro  -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext  -lX11 -lXt -lXmu  -lR -lm 
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/X11'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/X11'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/X11'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/X11'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
mkdir -p -- ../../library
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/profile'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/translations'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/translations'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/translations'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
building package 'base'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
mkdir -p -- ../../../library/base/demo
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c text.c -o text.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Rmd5.c -o Rmd5.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c md5.c -o md5.o
md5.c: In function 'md5_finish_ctx':
md5.c:102:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   *(md5_uint32 *) &ctx->buffer[bytes + pad] = SWAP (ctx->total[0] << 3);
   ^
md5.c:103:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   *(md5_uint32 *) &ctx->buffer[bytes + pad + 4] = SWAP ((ctx->total[1] << 3) |
   ^
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c signals.c -o signals.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c install.c -o install.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c getfmts.c -o getfmts.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c http.c -o http.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gramLatex.c -o gramLatex.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gramRd.c -o gramRd.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tools/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tools/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/compiler'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/compiler'
byte-compiling package 'compiler'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/compiler'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/compiler'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
byte-compiling package 'base'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
byte-compiling package 'tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c io.c -o io.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c size.c -o size.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sock.c -o sock.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c stubs.c -o stubs.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c utils.c -o utils.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/utils/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/utils/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
byte-compiling package 'utils'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/utils'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c axis_scales.c -o axis_scales.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chull.c -o chull.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c devices.c -o devices.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c stubs.c -o stubs.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c colors.c -o colors.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c devCairo.c -o devCairo.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c devPicTeX.c -o devPicTeX.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c devPS.c -o devPS.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c devQuartz.c -o devQuartz.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[7]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[8]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src/cairo'
make[9]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src/cairo'
gcc -m32 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cairoBM.c -o cairoBM.o
gcc -m32 -shared -L../../../../../lib -Wl,-z,relro  -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo  -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[9]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src/cairo'
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
byte-compiling package 'grDevices'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grDevices'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c base.c -o base.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c graphics.c -o graphics.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c par.c -o par.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plot.c -o plot.o
plot.c: In function 'C_abline':
plot.c:2840:29: warning: loop exit may only be reached after undefined behavior [-Waggressive-loop-optimizations]
       for(; xx[lstart] <= 0 && lstart < NS+1; lstart++);
                             ^
plot.c:2840:15: note: possible undefined statement is here
       for(; xx[lstart] <= 0 && lstart < NS+1; lstart++);
               ^
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plot3d.c -o plot3d.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c stem.c -o stem.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
byte-compiling package 'graphics'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/graphics'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c kmeans.c -o kmeans.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ansari.c -o ansari.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bandwidths.c -o bandwidths.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chisqsim.c -o chisqsim.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c d2x2xk.c -o d2x2xk.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fexact.c -o fexact.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c kendall.c -o kendall.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ks.c -o ks.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c line.c -o line.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c smooth.c -o smooth.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c prho.c -o prho.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c swilk.c -o swilk.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ksmooth.c -o ksmooth.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c loessc.c -o loessc.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c monoSpl.c -o monoSpl.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c isoreg.c -o isoreg.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Srunmed.c -o Srunmed.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dblcen.c -o dblcen.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c distance.c -o distance.o
In file included from /usr/include/math.h:26:0,
                 from ../../../include/R_ext/Arith.h:37,
                 from distance.c:26:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c hclust-utils.c -o hclust-utils.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c nls.c -o nls.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rWishart.c -o rWishart.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c HoltWinters.c -o HoltWinters.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c PPsum.c -o PPsum.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c arima.c -o arima.o
In file included from /usr/include/math.h:26:0,
                 from ../../../include/R_ext/Arith.h:37,
                 from arima.c:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c burg.c -o burg.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c filter.c -o filter.o
In file included from /usr/include/math.h:26:0,
                 from ../../../include/R_ext/Arith.h:37,
                 from filter.c:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mAR.c -o mAR.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pacf.c -o pacf.o
In file included from /usr/include/math.h:26:0,
                 from ../../../include/R_ext/Arith.h:37,
                 from pacf.c:29:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c starma.c -o starma.o
In file included from /usr/include/math.h:26:0,
                 from ../../../include/R_ext/Arith.h:37,
                 from starma.c:24:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c port.c -o port.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c family.c -o family.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sbart.c -o sbart.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c approx.c -o approx.o
In file included from /usr/include/math.h:26:0,
                 from ../../../include/R_ext/Arith.h:37,
                 from approx.c:25:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c loglin.c -o loglin.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lowess.c -o lowess.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c massdist.c -o massdist.o
In file included from /usr/include/math.h:26:0,
                 from ../../../include/R_ext/Arith.h:37,
                 from massdist.c:31:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
 # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
   ^
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c splines.c -o splines.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lm.c -o lm.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c complete_cases.c -o complete_cases.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cov.c -o cov.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c deriv.c -o deriv.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fft.c -o fft.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fourier.c -o fourier.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c model.c -o model.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c optim.c -o optim.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c optimize.c -o optimize.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c integrate.c -o integrate.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c random.c -o random.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c distn.c -o distn.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c zeroin.c -o zeroin.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rcont.c -o rcont.o
gcc -m32 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fopenmp -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c influence.c -o influence.o
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c bsplvd.f -o bsplvd.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c bvalue.f -o bvalue.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c bvalus.f -o bvalus.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c loessf.f -o loessf.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
loessf.f:59:14:
             j=DBLE(j)/2.D0
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:1896:14:
             m=DBLE(l+u)/2.D0
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:1398:20:
                   i=phi(pi(ii))
                    1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:927:12:
          lg=DBLE(lg)/2.D0
            1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:522:22:
       if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0
                      1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:1204:13:
       ifloor=x
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:834:22:
       if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0
                      1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:1582:18:
                i1=dble((d+2)*(d+1))/2.d0
                  1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
loessf.f:472:25:
       subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s)
                         1
Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument]
loessf.f:472:39:
       subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s)
                                       1
Warning: Unused dummy argument 'nc' at (1) [-Wunused-dummy-argument]
loessf.f:827:31:
       subroutine ehg197(deg,tau,d,f,dk,trl)
                               1
Warning: Unused dummy argument 'tau' at (1) [-Wunused-dummy-argument]
loessf.f:1987:31:
       subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi)
                               1
Warning: Unused dummy argument 'kappa' at (1) [-Wunused-dummy-argument]
loessf.f:1987:47:
       subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi)
                                               1
Warning: Unused dummy argument 'nv' at (1) [-Wunused-dummy-argument]
loessf.f:1987:53:
       subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi)
                                                     1
Warning: Unused dummy argument 'nvmax' at (1) [-Wunused-dummy-argument]
loessf.f:1856:22:
       logical i1,i2,i3,leaf
                      1
Warning: Unused variable 'i3' declared at (1) [-Wunused-variable]
loessf.f:1497:50:
       subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv)
                                                  1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
loessf.f:1497:53:
       subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv)
                                                     1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
loessf.f:1648:30:
       subroutine lowese(iv,liv,lv,wv,m,z,s)
                              1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
loessf.f:1648:33:
       subroutine lowese(iv,liv,lv,wv,m,z,s)
                                 1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
loessf.f:1667:39:
       subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s)
                                       1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
loessf.f:1667:42:
       subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s)
                                          1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
loessf.f:1699:30:
       subroutine lowesl(iv,liv,lv,wv,m,z,l)
                              1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
loessf.f:1699:33:
       subroutine lowesl(iv,liv,lv,wv,m,z,l)
                                 1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
loessf.f:1721:33:
       subroutine lowesr(yy,iv,liv,lv,wv)
                                 1
Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument]
loessf.f:1721:36:
       subroutine lowesr(yy,iv,liv,lv,wv)
                                    1
Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c ppr.f -o ppr.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
ppr.f:1323:8:
       t=a(ij)
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:1328:8:
       t=a(ij)
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:1336:8:
       t=a(ij)
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:1343:8:
       t=a(ij)
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:1354:9:
       tt=a(l)
         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:1379:8:
       t=a(i+1)
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:370:10:
         k=sc(j,1)
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:1088:10:
       ibw=0.5d0*span*n+0.5d0
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:396:10:
         k=sc(j,1)
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:404:10:
         k=sc(j,1)
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:115:8:
       l=sc(lm,1)
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:844:14:
             k=sp(j,1)
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:860:8:
       m=smod(1)+0.1d0
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:861:8:
       p=smod(2)+0.1d0
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:862:8:
       q=smod(3)+0.1d0
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:863:8:
       n=smod(4)+0.1d0
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:864:9:
       mu=smod(5)+0.1d0
         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
ppr.f:1229:42:
       integer iparms(3), i, nk, ip, isetup,ier
                                          1
Warning: Unused variable 'isetup' declared at (1) [-Wunused-variable]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c qsbart.f -o qsbart.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c sgram.f -o sgram.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c sinerp.f -o sinerp.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c sslvrg.f -o sslvrg.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c stxwx.f -o stxwx.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c hclust.f -o hclust.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c kmns.f -o kmns.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c eureka.f -o eureka.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c stl.f -o stl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32 -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -ffloat-store -c portsrc.f -o portsrc.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
portsrc.f:6428:0:
          NCOMP = NCOMP + 1
 ^
Warning: 'ncomp' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:6339:0:
       INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC,
 ^
Warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:5328:0:
       IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
 ^
Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:5463:0:
               IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310
 ^
Warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10090:0:
       V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA)
 ^
Warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10008:0:
       IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
 ^
Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10003:0:
       LK = DMAX1(LK, PHI*W(PHIPIN))
 ^
Warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10144:0:
       IF (KA .GE. KAMIN) GO TO 340
 ^
Warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:11900:0:
       V(NREDUC) = NRED
 ^
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:11903:0:
       V(DST0) = DNWTST
 ^
Warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:2390:0:
       V(NREDUC) = NRED
 ^
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:2389:0:
  60   V(DST0) = DS0
 ^
Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:7892:0:
       V(NREDUC) = NRED
 ^
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:7891:0:
  90   V(DST0) = DS0
 ^
Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:8370:0:
  210  IV(FDH) = HES
 ^
Warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:3456:0:
       IF (LIV .LT. MIV2) GO TO 300
 ^
Warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:11737:0:
  270  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
 ^
Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:11694:0:
       CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1))
 ^
Warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:11694:0: Warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:440:0:
  300  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
 ^
Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:348:0:
       CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1))
 ^
Warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:348:0: Warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -m32  -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c lminfl.f -o lminfl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
byte-compiling package 'stats'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/datasets'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/datasets'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c do_substitute_direct.c -o do_substitute_direct.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c slot.c -o slot.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c class_support.c -o class_support.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c tests.c -o tests.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c utils.c -o utils.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/methods/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/methods/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ... done
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/methods'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gpar.c -o gpar.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c grid.c -o grid.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c just.c -o just.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c layout.c -o layout.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c matrix.c -o matrix.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c register.c -o register.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c state.c -o state.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c unit.c -o unit.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c util.c -o util.o
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c viewport.c -o viewport.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grid/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grid/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
byte-compiling package 'grid'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/grid'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/splines/src'
making splines.d from splines.c
gcc -m32 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c splines.c -o splines.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/splines/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/splines/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
byte-compiling package 'splines'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/splines'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats4'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/stats4'
byte-compiling package 'stats4'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats4'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/stats4'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -m32 -I../../../../include -DNDEBUG -I/usr/include -I/usr/include  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I../../../../include -DNDEBUG -I/usr/include -I/usr/include  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c tcltk.c -o tcltk.o
gcc -m32 -I../../../../include -DNDEBUG -I/usr/include -I/usr/include  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c tcltk_unix.c -o tcltk_unix.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib -ltcl8.6 -L/usr/lib -ltk8.6 -lX11 -lm -L../../../../lib -lR
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk/src'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk'
byte-compiling package 'tcltk'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/tcltk'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
make[5]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rngstream.c -o rngstream.o
gcc -m32 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fork.c -o fork.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
make[4]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
byte-compiling package 'parallel'
make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/parallel'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/base'
installing parsed NAMESPACE files
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
you should 'make docs' now ...
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/doc'
creating NEWS
creating NEWS.pdf
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/doc/html'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/doc/html'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
installing parsed Rd
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
building/updating package metadata ...
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
writing package indices
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
building all R object docs
  converting help for package 'base'
    Arithmetic                              html  
Rd warning: /builddir/build/BUILD/R-3.1.3/src/library/base/man/Arithmetic.Rd:154: missing file link 'Ops'
    AsIs                                    html  
    Bessel                                  html  
    CallExternal                            html  
    Colon                                   html  
    Comparison                              html  
Rd warning: /builddir/build/BUILD/R-3.1.3/src/library/base/man/Comparison.Rd:103: missing file link 'Ops'
    Constants                               html  
    Control                                 html  
    Cstack_info                             html  
    DateTimeClasses                         html  
    Dates                                   html  
    Defunct                                 html  
    Deprecated                              html  
    Encoding                                html  
    EnvVar                                  html  
    Extract                                 html  
    Extract.data.frame                      html  
    Extract.factor                          html  
    Extremes                                html  
    Foreign-internal                        html  
    Foreign                                 html  
    Hyperbolic                              html  
    ISOdatetime                             html  
    Internal                                html  
    InternalMethods                         html  
    La_version                              html  
    Last.value                              html  
    Log                                     html  
    Logic                                   html  
Rd warning: /builddir/build/BUILD/R-3.1.3/src/library/base/man/Logic.Rd:104: missing file link 'Ops'
    LongVectors                             html  
    MathFun                                 html  
    Memory-limits                           html  
    Memory                                  html  
    NA                                      html  
    NULL                                    html  
    NumericConstants                        html  
    Ops.Date                                html  
    Paren                                   html  
    Platform                                html  
    Primitive                               html  
    Quotes                                  html  
    Random-user                             html  
    Random                                  html  
    RdUtils                                 html  
    Recall                                  html  
    Reserved                                html  
    Rhome                                   html  
    Round                                   html  
    Special                                 html  
    Startup                                 html  
    Syntax                                  html  
    Sys.getenv                              html  
    Sys.getpid                              html  
    Sys.glob                                html  
    Sys.info                                html  
    Sys.localeconv                          html  
    Sys.readlink                            html  
    Sys.setFileTime                         html  
    Sys.setenv                              html  
    Sys.sleep                               html  
    Sys.time                                html  
    Sys.which                               html  
    Trig                                    html  
    UseMethod                               html  
    Vectorize                               html  
    Version                                 html  
    abbreviate                              html  
    agrep                                   html  
    all                                     html  
    all.equal                               html  
    allnames                                html  
    any                                     html  
    aperm                                   html  
    append                                  html  
    apply                                   html  
    args                                    html  
    array                                   html  
    as.Date                                 html  
    as.POSIXlt                              html  
Rd warning: /builddir/build/BUILD/R-3.1.3/src/library/base/man/as.POSIXlt.Rd:126: missing file link 'format.POSIXlt'
    as.data.frame                           html  
    as.environment                          html  
    as.function                             html  
    assign                                  html  
    assignOps                               html  
    attach                                  html  
    attr                                    html  
    attributes                              html  
    autoload                                html  
    backsolve                               html  
    base-defunct                            html  
    base-deprecated                         html  
    base-internal                           html  
    base-package                            html  
    basename                                html  
    bincode                                 html  
    bindenv                                 html  
    bitwise                                 html  
    body                                    html  
    bquote                                  html  
    browser                                 html  
    browserText                             html  
    builtins                                html  
    by                                      html  
    c                                       html  
    call                                    html  
    callCC                                  html  
    capabilities                            html  
    cat                                     html  
    cbind                                   html  
    char.expand                             html  
    character                               html  
    charmatch                               html  
    chartr                                  html  
    chol                                    html  
    chol2inv                                html  
    class                                   html  
    col                                     html  
    colSums                                 html  
    colnames                                html  
    commandArgs                             html  
    comment                                 html  
    complex                                 html  
    conditions                              html  
    conflicts                               html  
    connections                             html  
    contributors                            html  
    copyright                               html  
    crossprod                               html  
    cumsum                                  html  
    cut.POSIXt                              html  
    cut                                     html  
    data.class                              html  
    data.frame                              html  
    data.matrix                             html  
    dataframeHelpers                        html  
    date                                    html  
    dcf                                     html  
    debug                                   html  
    delayedAssign                           html  
    deparse                                 html  
    deparseOpts                             html  
    det                                     html  
    detach                                  html  
    dev                                     html  
    diag                                    html  
    diff                                    html  
    difftime                                html  
    dim                                     html  
    dimnames                                html  
    do.call                                 html  
    dontCheck                               html  
    double                                  html  
    dput                                    html  
    drop                                    html  
    droplevels                              html  
    dump                                    html  
    duplicated                              html  
    dynload                                 html  
    eapply                                  html  
    eigen                                   html  
    encodeString                            html  
    environment                             html  
    eval                                    html  
    exists                                  html  
    expand.grid                             html  
    expression                              html  
    factor                                  html  
    file.access                             html  
    file.choose                             html  
    file.info                               html  
    file.path                               html  
    file.show                               html  
    files                                   html  
    files2                                  html  
    find.package                            html  
    findInterval                            html  
    force                                   html  
    formals                                 html  
    format                                  html  
    format.info                             html  
    format.pval                             html  
    formatDL                                html  
    formatc                                 html  
    function                                html  
    funprog                                 html  
    gc                                      html  
    gc.time                                 html  
    gctorture                               html  
    get                                     html  
    getCallingDLL                           html  
    getDLLRegisteredRoutines                html  
    getLoadedDLLs                           html  
    getNativeSymbolInfo                     html  
    gettext                                 html  
    getwd                                   html  
    gl                                      html  
    grep                                    html  
    grepRaw                                 html  
    groupGeneric                            html  
    gzcon                                   html  
    hexmode                                 html  
    iconv                                   html  
    icuSetCollate                           html  
    identical                               html  
    identity                                html  
    ifelse                                  html  
    integer                                 html  
    interaction                             html  
    interactive                             html  
    invisible                               html  
    is.finite                               html  
    is.function                             html  
    is.language                             html  
    is.object                               html  
    is.recursive                            html  
    is.single                               html  
    is.unsorted                             html  
    isR                                     html  
    isS4                                    html  
    isSymmetric                             html  
    jitter                                  html  
    kappa                                   html  
    kronecker                               html  
    l10n_info                               html  
    labels                                  html  
    lapply                                  html  
    lazyload                                html  
    length                                  html  
    levels                                  html  
    libPaths                                html  
    library                                 html  
    library.dynam                           html  
    license                                 html  
    list                                    html  
    list.files                              html  
    list2env                                html  
    load                                    html  
    locales                                 html  
    logical                                 html  
    lower.tri                               html  
    ls                                      html  
    make.names                              html  
    make.unique                             html  
    mapply                                  html  
    margin.table                            html  
    mat.or.vec                              html  
    match                                   html  
    match.arg                               html  
    match.call                              html  
    match.fun                               html  
    matmult                                 html  
    matrix                                  html  
    maxCol                                  html  
    mean                                    html  
    memCompress                             html  
    memory.profile                          html  
    merge                                   html  
    message                                 html  
    missing                                 html  
    mode                                    html  
    name                                    html  
    names                                   html  
    nargs                                   html  
    nchar                                   html  
    nlevels                                 html  
    noquote                                 html  
    norm                                    html  
    normalizePath                           html  
    notyet                                  html  
    nrow                                    html  
    ns-dblcolon                             html  
    ns-hooks                                html  
    ns-internal                             html  
    ns-load                                 html  
    ns-reflect                              html  
    ns-topenv                               html  
    numeric                                 html  
    numeric_version                         html  
    octmode                                 html  
    on.exit                                 html  
    options                                 html  
    order                                   html  
    outer                                   html  
    parse                                   html  
    paste                                   html  
    path.expand                             html  
    pcre_config                             html  
    pmatch                                  html  
    polyroot                                html  
    pos.to.env                              html  
    pretty                                  html  
    print                                   html  
Rd warning: /builddir/build/BUILD/R-3.1.3/src/library/base/man/print.Rd:84: missing file link '.print.via.format'
    print.dataframe                         html  
    print.default                           html  
    prmatrix                                html  
    proc.time                               html  
    prod                                    html  
    prop.table                              html  
    pushBack                                html  
    qr                                      html  
    qraux                                   html  
    quit                                    html  
    range                                   html  
    rank                                    html  
    rapply                                  html  
    raw                                     html  
    rawConnection                           html  
    rawConversion                           html  
    readBin                                 html  
    readChar                                html  
    readLines                               html  
    readRDS                                 html  
    readRenviron                            html  
    readline                                html  
    reg.finalizer                           html  
    regex                                   html  
    regmatches                              html  
    rep                                     html  
    replace                                 html  
    rev                                     html  
    rle                                     html  
    rm                                      html  
    round.POSIXt                            html  
    row                                     html  
    row.names                               html  
    rowsum                                  html  
    sQuote                                  html  
    sample                                  html  
    save                                    html  
    scale                                   html  
    scan                                    html  
    search                                  html  
    seek                                    html  
    seq.Date                                html  
    seq.POSIXt                              html  
    seq                                     html  
    sequence                                html  
    serialize                               html  
    setTimeLimit                            html  
    sets                                    html  
    shQuote                                 html  
    showConnections                         html  
    sign                                    html  
    sink                                    html  
    slice.index                             html  
    slotOp                                  html  
    socketSelect                            html  
    solve                                   html  
    sort                                    html  
    source                                  html  
    split                                   html  
    sprintf                                 html  
    srcfile                                 html  
    standardGeneric                         html  
    stop                                    html  
    stopifnot                               html  
    strptime                                html  
    strsplit                                html  
    strtoi                                  html  
    strtrim                                 html  
    structure                               html  
    strwrap                                 html  
    subset                                  html  
    substitute                              html  
    substr                                  html  
    sum                                     html  
    summary                                 html  
    svd                                     html  
    sweep                                   html  
    switch                                  html  
    sys.parent                              html  
    sys.source                              html  
    system                                  html  
    system.file                             html  
    system.time                             html  
    system2                                 html  
    t                                       html  
    table                                   html  
    tabulate                                html  
    tapply                                  html  
    taskCallback                            html  
    taskCallbackManager                     html  
    taskCallbackNames                       html  
    tempfile                                html  
    textconnections                         html  
    tilde                                   html  
    timezones                               html  
    toString                                html  
    trace                                   html  
    traceback                               html  
    tracemem                                html  
    transform                               html  
    try                                     html  
    typeof                                  html  
    unique                                  html  
    unlink                                  html  
    unlist                                  html  
    unname                                  html  
    userhooks                               html  
    utf8Conversion                          html  
    vector                                  html  
    warning                                 html  
    warnings                                html  
    weekday.POSIXt                          html  
    which                                   html  
    which.min                               html  
    with                                    html  
    withVisible                             html  
    write                                   html  
    writeLines                              html  
    xtfrm                                   html  
    zMachine                                html  
    zScript                                 html  
    zapsmall                                html  
    zpackages                               html  
    zutils                                  html  
    Signals                                 html  
  converting help for package 'tools'
    HTMLheader                              html  
    HTMLlinks                               html  
    QC                                      html  
    Rd2HTML                                 html  
    Rd2txt_options                          html  
    RdTextFilter                            html  
    Rdiff                                   html  
    Rdindex                                 html  
    Rdutils                                 html  
    SweaveTeXFilter                         html  
    add_datalist                            html  
    assertCondition                         html  
    bibstyle                                html  
    buildVignette                           html  
    buildVignettes                          html  
    charsets                                html  
    checkFF                                 html  
    checkMD5sums                            html  
    checkPoFiles                            html  
    checkRd                                 html  
    checkRdaFiles                           html  
    checkTnF                                html  
    checkVignettes                          html  
    check_packages_in_dir                   html  
Rd warning: /builddir/build/BUILD/R-3.1.3/src/library/tools/man/check_packages_in_dir.Rd:96: missing file link 'parLapply'
    codoc                                   html  
    compactPDF                              html  
    delimMatch                              html  
    dependsOnPkgs                           html  
    encoded                                 html  
    fileutils                               html  
    find_gs_cmd                             html  
    getDepList                              html  
    getVignetteInfo                         html  
    installFoundDepends                     html  
    makeLazyLoading                         html  
    make_translations_pkg                   html  
    md5sum                                  html  
    package.dependencies                    html  
    package_dependencies                    html  
    parseLatex                              html  
    parse_Rd                                html  
    print.via.format                        html  
    pskill                                  html  
    psnice                                  html  
    read.00Index                            html  
    showNonASCII                            html  
    startDynamicHelp                        html  
    testInstalledPackage                    html  
    texi2dvi                                html  
    toHTML                                  html  
    toRd                                    html  
    tools-defunct                           html  
    tools-deprecated                        html  
    tools-package                           html  
    undoc                                   html  
    update_pkg_po                           html  
    vignetteDepends                         html  
    vignetteEngine                          html  
    writePACKAGES                           html  
    xgettext                                html  
  converting help for package 'utils'
    BATCH                                   html  
    INSTALL                                 html  
    PkgUtils                                html  
    Question                                html  
    REMOVE                                  html  
    RHOME                                   html  
    RShowDoc                                html  
    RSiteSearch                             html  
    Rprof                                   html  
    Rprofmem                                html  
    Rscript                                 html  
    Rtangle                                 html  
    RweaveLatex                             html  
    SHLIB                                   html  
    Sweave                                  html  
    SweaveSyntConv                          html  
    SweaveUtils                             html  
    URLencode                               html  
    View                                    html  
    adist                                   html  
    alarm                                   html  
    apropos                                 html  
    aregexec                                html  
    aspell-utils                            html  
    aspell                                  html  
    available.packages                      html  
    bibentry                                html  
    browseEnv                               html  
    browseURL                               html  
    browseVignettes                         html  
    bug.report                              html  
    capture.output                          html  
    changedFiles                            html  
    chooseBioCmirror                        html  
    chooseCRANmirror                        html  
    citEntry                                html  
    citation                                html  
    cite                                    html  
    close.socket                            html  
    combn                                   html  
    compareVersion                          html  
    contrib.url                             html  
    count.fields                            html  
    create.post                             html  
    data                                    html  
    dataentry                               html  
    debugger                                html  
    demo                                    html  
    download.file                           html  
    download.packages                       html  
    edit                                    html  
    edit.data.frame                         html  
    example                                 html  
    file.edit                               html  
    filetest                                html  
    findLineNum                             html  
    fix                                     html  
    flush.console                           html  
    format                                  html  
    getAnywhere                             html  
    getFromNamespace                        html  
    getParseData                            html  
    getS3method                             html  
    glob2rx                                 html  
    globalVariables                         html  
    head                                    html  
    help                                    html  
    help.request                            html  
    help.search                             html  
    help.start                              html  
    install.packages                        html  
    installed.packages                      html  
    localeToCharset                         html  
    ls_str                                  html  
    maintainer                              html  
    make.packages.html                      html  
    make.socket                             html  
    menu                                    html  
    methods                                 html  
    mirrorAdmin                             html  
    modifyList                              html  
    news                                    html  
    object.size                             html  
    package.skeleton                        html  
    packageDescription                      html  
    packageName                             html  
    packageStatus                           html  
    page                                    html  
    person                                  html  
    process.events                          html  
    prompt                                  html  
    promptData                              html  
    promptPackage                           html  
    rcompgen                                html  
    read.DIF                                html  
    read.fortran                            html  
    read.fwf                                html  
    read.socket                             html  
    read.table                              html  
    recover                                 html  
    relist                                  html  
    remove.packages                         html  
    removeSource                            html  
    roman                                   html  
    rtags                                   html  
    savehistory                             html  
    select.list                             html  
    sessionInfo                             html  
    setRepositories                         html  
    sourceutils                             html  
    stack                                   html  
    str                                     html  
    summaryRprof                            html  
    tar                                     html  
    toLatex                                 html  
    txtProgressBar                          html  
    type.convert                            html  
    untar                                   html  
    unzip                                   html  
    update.packages                         html  
    url.show                                html  
    utils-defunct                           html  
    utils-deprecated                        html  
    utils-package                           html  
    vignette                                html  
    write.table                             html  
    zip                                     html  
    COMPILE                                 html  
    LINK                                    html  
    memory.size                             html  
    nsl                                     html  
  converting help for package 'grDevices'
    Devices                                 html  
    Hershey                                 html  
    Japanese                                html  
    Type1Font                               html  
    adjustcolor                             html  
    as.graphicsAnnot                        html  
    as.raster                               html  
    axisTicks                               html  
    boxplot.stats                           html  
    cairo                                   html  
    check.options                           html  
    chull                                   html  
    cm                                      html  
    col2rgb                                 html  
    colorRamp                               html  
    colors                                  html  
    contourLines                            html  
    convertColor                            html  
    densCols                                html  
    dev                                     html  
    dev.capabilities                        html  
    dev.capture                             html  
    dev.flush                               html  
    dev.interactive                         html  
    dev.size                                html  
    dev2                                    html  
    dev2bitmap                              html  
    devAskNewPage                           html  
    embedFonts                              html  
    extendrange                             html  
    getGraphicsEvent                        html  
    grDevices-package                       html  
    gray                                    html  
    gray.colors                             html  
    hcl                                     html  
    hsv                                     html  
    make.rgb                                html  
    n2mfrow                                 html  
    nclass                                  html  
    palette                                 html  
    palettes                                html  
    pdf                                     html  
    pdf.options                             html  
    pictex                                  html  
    plotmath                                html  
    postscript                              html  
    postscriptFonts                         html  
    pretty.Date                             html  
    ps.options                              html  
    recordGraphics                          html  
    recordplot                              html  
    rgb                                     html  
    rgb2hsv                                 html  
    trans3d                                 html  
    xfig                                    html  
    xy.coords                               html  
    xyTable                                 html  
    xyz.coords                              html  
    png                                     html  
    quartz                                  html  
    quartzFonts                             html  
    savePlot                                html  
    x11                                     html  
    x11Fonts                                html  
  converting help for package 'graphics'
    abline                                  html  
    arrows                                  html  
    assocplot                               html  
    axTicks                                 html  
    axis.POSIXct                            html  
    axis                                    html  
    barplot                                 html  
    box                                     html  
    boxplot                                 html  
    boxplot.matrix                          html  
    bxp                                     html  
    cdplot                                  html  
    clip                                    html  
    contour                                 html  
    convertXY                               html  
    coplot                                  html  
    curve                                   html  
    dotchart                                html  
    filled.contour                          html  
    fourfoldplot                            html  
    frame                                   html  
    graphics-defunct                        html  
    graphics-package                        html  
    grid                                    html  
    hist.POSIXt                             html  
    hist                                    html  
    identify                                html  
    image                                   html  
    layout                                  html  
    legend                                  html  
    lines                                   html  
    locator                                 html  
    matplot                                 html  
    mosaicplot                              html  
    mtext                                   html  
    pairs                                   html  
    panel.smooth                            html  
    par                                     html  
    persp                                   html  
    pie                                     html  
    plot                                    html  
    plot.dataframe                          html  
    plot.default                            html  
    plot.design                             html  
    plot.factor                             html  
    plot.formula                            html  
    plot.table                              html  
    plot.window                             html  
    plot.xy                                 html  
    plothistogram                           html  
    points                                  html  
    polygon                                 html  
    polypath                                html  
    rasterImage                             html  
    rect                                    html  
    rug                                     html  
    screen                                  html  
    segments                                html  
    smoothScatter                           html  
    spineplot                               html  
    stars                                   html  
    stem                                    html  
    stripchart                              html  
    strwidth                                html  
    sunflowerplot                           html  
    symbols                                 html  
    text                                    html  
    title                                   html  
    units                                   html  
    xspline                                 html  
    zAxis                                   html  
  converting help for package 'stats'
    AIC                                     html  
    ARMAacf                                 html  
    ARMAtoMA                                html  
    Beta                                    html  
    Binomial                                html  
    Cauchy                                  html  
    Chisquare                               html  
    Distributions                           html  
    Exponential                             html  
    Fdist                                   html  
    GammaDist                               html  
    Geometric                               html  
    HoltWinters                             html  
    Hypergeometric                          html  
    IQR                                     html  
    KalmanLike                              html  
    Logistic                                html  
    Lognormal                               html  
    Multinom                                html  
    NLSstAsymptotic                         html  
    NLSstClosestX                           html  
    NLSstLfAsymptote                        html  
    NLSstRtAsymptote                        html  
    NegBinomial                             html  
    Normal                                  html  
    Poisson                                 html  
    SSD                                     html  
    SSasymp                                 html  
    SSasympOff                              html  
    SSasympOrig                             html  
    SSbiexp                                 html  
    SSfol                                   html  
    SSfpl                                   html  
    SSgompertz                              html  
    SSlogis                                 html  
    SSmicmen                                html  
    SSweibull                               html  
    SignRank                                html  
    StructTS                                html  
    TDist                                   html  
    Tukey                                   html  
    TukeyHSD                                html  
    Uniform                                 html  
    Weibull                                 html  
    Wilcoxon                                html  
    acf                                     html  
    acf2AR                                  html  
    add1                                    html  
    addmargins                              html  
    aggregate                               html  
    alias                                   html  
    anova                                   html  
    anova.glm                               html  
    anova.lm                                html  
    anova.mlm                               html  
    ansari.test                             html  
    aov                                     html  
    approxfun                               html  
    ar                                      html  
    ar.ols                                  html  
    arima                                   html  
    arima.sim                               html  
    arima0                                  html  
    as.hclust                               html  
    asOneSidedFormula                       html  
    ave                                     html  
    bandwidth                               html  
    bartlett.test                           html  
    binom.test                              html  
    biplot                                  html  
    biplot.princomp                         html  
    birthday                                html  
    box.test                                html  
    cancor                                  html  
    case.names                              html  
    checkMFClasses                          html  
    chisq.test                              html  
    cmdscale                                html  
    coef                                    html  
    complete.cases                          html  
    confint                                 html  
    constrOptim                             html  
    contrast                                html  
    contrasts                               html  
    convolve                                html  
    cophenetic                              html  
    cor                                     html  
    cor.test                                html  
    cov.wt                                  html  
    cpgram                                  html  
    cutree                                  html  
    decompose                               html  
    delete.response                         html  
    dendrapply                              html  
    dendrogram                              html  
    density                                 html  
    deriv                                   html  
    deviance                                html  
    df.residual                             html  
    diffinv                                 html  
    dist                                    html  
    dummy.coef                              html  
    ecdf                                    html  
    eff.aovlist                             html  
    effects                                 html  
    embed                                   html  
    expand.model.frame                      html  
    extractAIC                              html  
    factanal                                html  
    factor.scope                            html  
    family                                  html  
    fft                                     html  
    filter                                  html  
    fisher.test                             html  
    fitted.values                           html  
    fivenum                                 html  
    fligner.test                            html  
    formula                                 html  
    formula.nls                             html  
    friedman.test                           html  
    ftable                                  html  
    ftable.formula                          html  
    getInitial                              html  
    glm                                     html  
    glm.control                             html  
    glm.summaries                           html  
    hclust                                  html  
    heatmap                                 html  
    identify.hclust                         html  
    influence.measures                      html  
    integrate                               html  
    interaction.plot                        html  
    is.empty                                html  
    isoreg                                  html  
    kernapply                               html  
    kernel                                  html  
    kmeans                                  html  
    kruskal.test                            html  
    ks.test                                 html  
    ksmooth                                 html  
    lag                                     html  
    lag.plot                                html  
    line                                    html  
    listof                                  html  
    lm                                      html  
    lm.influence                            html  
    lm.summaries                            html  
    lmfit                                   html  
    loadings                                html  
    loess                                   html  
    loess.control                           html  
    logLik                                  html  
    loglin                                  html  
    lowess                                  html  
    ls.diag                                 html  
    ls.print                                html  
    lsfit                                   html  
    mad                                     html  
    mahalanobis                             html  
    make.link                               html  
    makepredictcall                         html  
    manova                                  html  
    mantelhaen.test                         html  
    mauchly.test                            html  
    mcnemar.test                            html  
    median                                  html  
    medpolish                               html  
    model.extract                           html  
    model.frame                             html  
    model.matrix                            html  
    model.tables                            html  
    monthplot                               html  
    mood.test                               html  
    na.action                               html  
    na.contiguous                           html  
    na.fail                                 html  
    nafns                                   html  
    naprint                                 html  
    nextn                                   html  
    nlm                                     html  
    nlminb                                  html  
    nls                                     html  
    nls.control                             html  
    nobs                                    html  
    numericDeriv                            html  
    offset                                  html  
    oneway.test                             html  
    optim                                   html  
    optimize                                html  
    order.dendrogram                        html  
    p.adjust                                html  
    pairwise.prop.test                      html  
    pairwise.t.test                         html  
    pairwise.table                          html  
    pairwise.wilcox.test                    html  
    plot.HoltWinters                        html  
    plot.acf                                html  
    plot.density                            html  
    plot.isoreg                             html  
    plot.lm                                 html  
    plot.ppr                                html  
    plot.profile.nls                        html  
    plot.spec                               html  
    plot.stepfun                            html  
    plot.ts                                 html  
    poisson.test                            html  
    poly                                    html  
    power                                   html  
    power.anova.test                        html  
    power.prop.test                         html  
    power.t.test                            html  
    pp.test                                 html  
    ppoints                                 html  
    ppr                                     html  
    prcomp                                  html  
    predict.HoltWinters                     html  
    predict                                 html  
    predict.arima                           html  
    predict.glm                             html  
    predict.lm                              html  
    predict.loess                           html  
    predict.nls                             html  
    predict.smooth.spline                   html  
    preplot                                 html  
    princomp                                html  
    print.power.htest                       html  
    print.ts                                html  
    printCoefmat                            html  
    profile                                 html  
    profile.nls                             html  
    proj                                    html  
    prop.test                               html  
    prop.trend.test                         html  
    qqnorm                                  html  
    quade.test                              html  
    quantile                                html  
    r2dtable                                html  
    rWishart                                html  
    read.ftable                             html  
    rect.hclust                             html  
    relevel                                 html  
    reorder.dendrogram                      html  
    reorder.factor                          html  
    replications                            html  
    reshape                                 html  
    residuals                               html  
    runmed                                  html  
    scatter.smooth                          html  
    screeplot                               html  
    sd                                      html  
    se.contrast                             html  
    selfStart                               html  
    setNames                                html  
    shapiro.test                            html  
    simulate                                html  
    smooth                                  html  
    smooth.spline                           html  
    smoothEnds                              html  
    sortedXyData                            html  
    spec.ar                                 html  
    spec.pgram                              html  
    spec.taper                              html  
    spectrum                                html  
    splinefun                               html  
    start                                   html  
    stat.anova                              html  
    stats-defunct                           html  
    stats-deprecated                        html  
    stats-package                           html  
    step                                    html  
    stepfun                                 html  
    stl                                     html  
    stlmethods                              html  
    summary.aov                             html  
    summary.glm                             html  
    summary.lm                              html  
    summary.manova                          html  
    summary.nls                             html  
    summary.princomp                        html  
    supsmu                                  html  
    symnum                                  html  
    t.test                                  html  
    termplot                                html  
    terms                                   html  
    terms.formula                           html  
    terms.object                            html  
    time                                    html  
    toeplitz                                html  
    ts-methods                              html  
    ts                                      html  
    ts.plot                                 html  
    ts.union                                html  
    tsSmooth                                html  
    tsdiag                                  html  
    tsp                                     html  
    uniroot                                 html  
    update                                  html  
    update.formula                          html  
    var.test                                html  
    varimax                                 html  
    vcov                                    html  
    weighted.mean                           html  
    weighted.residuals                      html  
    weights                                 html  
    wilcox.test                             html  
    window                                  html  
    xtabs                                   html  
    zC                                      html  
  converting help for package 'datasets'
    AirPassengers                           html  
    BJsales                                 html  
    BOD                                     html  
    ChickWeight                             html  
    DNase                                   html  
    EuStockMarkets                          html  
    Formaldehyde                            html  
    HairEyeColor                            html  
    Harman23.cor                            html  
    Harman74.cor                            html  
    Indometh                                html  
    InsectSprays                            html  
    JohnsonJohnson                          html  
    LakeHuron                               html  
    LifeCycleSavings                        html  
    Loblolly                                html  
    Nile                                    html  
    Orange                                  html  
    OrchardSprays                           html  
    PlantGrowth                             html  
    Puromycin                               html  
    Theoph                                  html  
    Titanic                                 html  
    ToothGrowth                             html  
    UCBAdmissions                           html  
    UKDriverDeaths                          html  
    UKLungDeaths                            html  
    UKgas                                   html  
    USAccDeaths                             html  
    USArrests                               html  
    USJudgeRatings                          html  
    USPersonalExpenditure                   html  
    VADeaths                                html  
    WWWusage                                html  
    WorldPhones                             html  
    ability.cov                             html  
    airmiles                                html  
    airquality                              html  
    anscombe                                html  
    attenu                                  html  
    attitude                                html  
    austres                                 html  
    beavers                                 html  
    cars                                    html  
    chickwts                                html  
    co2                                     html  
    crimtab                                 html  
    datasets-package                        html  
    discoveries                             html  
    esoph                                   html  
    euro                                    html  
    eurodist                                html  
    faithful                                html  
    freeny                                  html  
    infert                                  html  
    iris                                    html  
    islands                                 html  
    lh                                      html  
    longley                                 html  
    lynx                                    html  
    morley                                  html  
    mtcars                                  html  
    nhtemp                                  html  
    nottem                                  html  
    npk                                     html  
    occupationalStatus                      html  
    precip                                  html  
    presidents                              html  
    pressure                                html  
    quakes                                  html  
    randu                                   html  
    rivers                                  html  
    rock                                    html  
    sleep                                   html  
    stackloss                               html  
    state                                   html  
    sunspot.month                           html  
    sunspot.year                            html  
    sunspots                                html  
    swiss                                   html  
    treering                                html  
    trees                                   html  
    uspop                                   html  
    volcano                                 html  
    warpbreaks                              html  
    women                                   html  
    zCO2                                    html  
  converting help for package 'methods'
    BasicClasses                            html  
    Classes                                 html  
    Documentation                           html  
    EmptyMethodsList-class                  html  
    EnvironmentClass                        html  
    GenericFunctions                        html  
    LanguageClasses                         html  
    LinearMethodsList-class                 html  
    MethodDefinition-class                  html  
    MethodSupport                           html  
    MethodWithNext-class                    html  
    Methods                                 html  
    MethodsList-class                       html  
    MethodsList                             html  
    NextMethod                              html  
    ObjectsWithPackage-class                html  
    RClassUtils                             html  
    RMethodUtils                            html  
    S3Part                                  html  
    S4groupGeneric                          html  
    SClassExtension-class                   html  
    StructureClasses                        html  
    TraceClasses                            html  
    as                                      html  
    callGeneric                             html  
    canCoerce                               html  
    cbind2                                  html  
    className                               html  
    classRepresentation-class               html  
    classesToAM                             html  
    dotsMethods                             html  
    evalSource                              html  
    findClass                               html  
    findMethods                             html  
    fixPrevious                             html  
    genericFunction-class                   html  
    getClass                                html  
    getMethod                               html  
    getPackageName                          html  
    hasArg                                  html  
    implicitGeneric                         html  
    inheritedSlotNames                      html  
    initialize-methods                      html  
    is                                      html  
    isSealedMethod                          html  
    languageEl                              html  
    localRefClass                           html  
    method.skeleton                         html  
    methodUtilities                         html  
    methods-defunct                         html  
    methods-deprecated                      html  
    methods-package                         html  
    new                                     html  
    nonStructure-class                      html  
    promptClass                             html  
    promptMethods                           html  
    refClass                                html  
    representation                          html  
    selectSuperClasses                      html  
    setClass                                html  
    setClassUnion                           html  
    setGeneric                              html  
    setLoadActions                          html  
    setMethod                               html  
    setOldClass                             html  
    setSClass                               html  
    show                                    html  
    showMethods                             html  
    signature-class                         html  
    slot                                    html  
    stdRefClass                             html  
    substituteDirect                        html  
    testInheritedMethods                    html  
    validObject                             html  
    zBasicFunsList                          html  
  converting help for package 'grid'
    Grid                                    html  
    absolute.size                           html  
    arrow                                   html  
    calcStringMetric                        html  
    current.viewport                        html  
    dataViewport                            html  
    depth                                   html  
    drawDetails                             html  
    editDetails                             html  
    explode                                 html  
    gEdit                                   html  
    gPath                                   html  
    getNames                                html  
    gpar                                    html  
    grid-defunct                            html  
    grid-internal                           html  
    grid-package                            html  
    grid.DLapply                            html  
    grid.add                                html  
    grid.bezier                             html  
    grid.cap                                html  
    grid.circle                             html  
    grid.clip                               html  
    grid.convert                            html  
    grid.copy                               html  
    grid.curve                              html  
    grid.delay                              html  
    grid.display.list                       html  
    grid.draw                               html  
    grid.edit                               html  
    grid.force                              html  
    grid.frame                              html  
    grid.function                           html  
    grid.get                                html  
    grid.grab                               html  
    grid.grep                               html  
    grid.grill                              html  
    grid.grob                               html  
    grid.layout                             html  
    grid.lines                              html  
    grid.locator                            html  
    grid.ls                                 html  
    grid.move.to                            html  
    grid.newpage                            html  
    grid.null                               html  
    grid.pack                               html  
    grid.path                               html  
    grid.place                              html  
    grid.plot.and.legend                    html  
    grid.points                             html  
    grid.polygon                            html  
    grid.pretty                             html  
    grid.raster                             html  
    grid.record                             html  
    grid.rect                               html  
    grid.refresh                            html  
    grid.remove                             html  
    grid.reorder                            html  
    grid.roundrect                          html  
    grid.segments                           html  
    grid.set                                html  
    grid.show.layout                        html  
    grid.show.viewport                      html  
    grid.text                               html  
    grid.xaxis                              html  
    grid.xspline                            html  
    grid.yaxis                              html  
    grobName                                html  
    grobWidth                               html  
    grobX                                   html  
    legendGrob                              html  
    makeContent                             html  
    plotViewport                            html  
    resolveRasterSize                       html  
    showGrob                                html  
    showViewport                            html  
    stringWidth                             html  
    unit                                    html  
    unit.c                                  html  
    unit.length                             html  
    unit.pmin                               html  
    unit.rep                                html  
    valid.just                              html  
    validDetails                            html  
    viewport                                html  
    viewports                               html  
    vpPath                                  html  
    widthDetails                            html  
    xDetails                                html  
    xsplinePoints                           html  
  converting help for package 'splines'
    asVector                                html  
    backSpline                              html  
    bs                                      html  
    interpSpline                            html  
    ns                                      html  
    periodicSpline                          html  
    polySpline                              html  
    predict.bSpline                         html  
    predict.bs                              html  
    splineDesign                            html  
    finding level-2 HTML links ... done
Rd warning: /builddir/build/BUILD/R-3.1.3/src/library/splines/man/splineDesign.Rd:39: missing link 'sparseMatrix-class'
    splineKnots                             html  
    splineOrder                             html  
    splines-package                         html  
    xyVector                                html  
  converting help for package 'stats4'
    coef-methods                            html  
    confint-methods                         html  
    logLik-methods                          html  
    mle-class                               html  
    mle                                     html  
    plot-methods                            html  
    profile-methods                         html  
    profile.mle-class                       html  
    show-methods                            html  
    stats4-package                          html  
    summary-methods                         html  
    summary.mle-class                       html  
    update-methods                          html  
    vcov-methods                            html  
  converting help for package 'tcltk'
    TclInterface                            html  
    TkCommands                              html  
    TkWidgetcmds                            html  
    TkWidgets                               html  
    tclServiceMode                          html  
    tcltk-defunct                           html  
    tcltk-package                           html  
    tkProgressBar                           html  
    tkStartGUI                              html  
    tk_choose.dir                           html  
    tk_choose.files                         html  
    tk_messageBox                           html  
    tk_select.list                          html  
    tkpager                                 html  
  converting help for package 'compiler'
    compile                                 html  
  converting help for package 'parallel'
    RngStream                               html  
    clusterApply                            html  
    detectCores                             html  
    makeCluster                             html  
    parallel-package                        html  
    splitIndices                            html  
    children                                html  
    mcaffinity                              html  
    mcfork                                  html  
    mclapply                                html  
    mcparallel                              html  
    pvec                                    html  
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/Recommended'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library/Recommended'
begin installing recommended package MASS
* installing *source* package 'MASS' ...
** package 'MASS' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpiXeNuP/R.INSTALL19ae3020a3c2/MASS/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c MASS.c -o MASS.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lqs.c -o lqs.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpiXeNuP/R.INSTALL19ae3020a3c2/MASS/src'
installing to /builddir/build/BUILD/R-3.1.3/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MASS'
    finding HTML links ... done
    Aids2                                   html  
    Animals                                 html  
    Boston                                  html  
    Cars93                                  html  
    Cushings                                html  
    DDT                                     html  
    GAGurine                                html  
    Insurance                               html  
    MASS-internal                           html  
    Melanoma                                html  
    Null                                    html  
    OME                                     html  
    Pima.tr                                 html  
    Rabbit                                  html  
    Rubber                                  html  
    SP500                                   html  
    Sitka                                   html  
    Sitka89                                 html  
    Skye                                    html  
    Traffic                                 html  
    UScereal                                html  
    UScrime                                 html  
    VA                                      html  
    abbey                                   html  
    accdeaths                               html  
    addterm                                 html  
    anorexia                                html  
    anova.negbin                            html  
    area                                    html  
    bacteria                                html  
    bandwidth.nrd                           html  
    bcv                                     html  
    beav1                                   html  
    beav2                                   html  
    biopsy                                  html  
    birthwt                                 html  
    boxcox                                  html  
    cabbages                                html  
    caith                                   html  
    cats                                    html  
    cement                                  html  
    chem                                    html  
    con2tr                                  html  
    confint                                 html  
    contr.sdif                              html  
    coop                                    html  
    corresp                                 html  
    cov.rob                                 html  
    cov.trob                                html  
    cpus                                    html  
    crabs                                   html  
    deaths                                  html  
    denumerate                              html  
    dose.p                                  html  
    drivers                                 html  
    dropterm                                html  
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    write.matrix                            html  
    wtloss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
Making 'packages.html' ... done
begin installing recommended package lattice
* installing *source* package 'lattice' ...
** package 'lattice' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpsUs2kk/R.INSTALL19df36e38716/lattice/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c threeDplot.c -o threeDplot.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpsUs2kk/R.INSTALL19df36e38716/lattice/src'
installing to /builddir/build/BUILD/R-3.1.3/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'lattice'
    finding HTML links ... done
    Lattice                                 html  
    Rows                                    html  
    axis.default                            html  
    banking                                 html  
    barchart.table                          html  
    barley                                  html  
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    draw.colorkey                           html  
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    environmental                           html  
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    latticeParseFormula                     html  
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    utilities.3d                            html  
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    xyplot.ts                               html  
** building package indices
** testing if installed package can be loaded
* DONE (lattice)
Making 'packages.html' ... done
begin installing recommended package Matrix
* installing *source* package 'Matrix' ...
** package 'Matrix' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c CHMfactor.c -o CHMfactor.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Csparse.c -o Csparse.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c TMatrix_as.c -o TMatrix_as.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Tsparse.c -o Tsparse.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Mutils.c -o Mutils.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chm_common.c -o chm_common.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cs.c -o cs.o
cs.c: In function 'cs_qr':
cs.c:1408:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
     csi i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai,
                  ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cs_utils.c -o cs_utils.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dense.c -o dense.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgCMatrix.c -o dgCMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgTMatrix.c -o dgTMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgeMatrix.c -o dgeMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dpoMatrix.c -o dpoMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dppMatrix.c -o dppMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dsCMatrix.c -o dsCMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dsyMatrix.c -o dsyMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dspMatrix.c -o dspMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dtCMatrix.c -o dtCMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dtTMatrix.c -o dtTMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dtrMatrix.c -o dtrMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dtpMatrix.c -o dtpMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c factorizations.c -o factorizations.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ldense.c -o ldense.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lgCMatrix.c -o lgCMatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sparseQR.c -o sparseQR.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c abIndex.c -o abIndex.o
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD'
( cd Lib ; make clean )
make[5]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD/Lib'
make[5]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD'
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD'
( cd Source ; make clean )
make[5]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD/Source'
make[5]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD/Source'
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD'
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD'
( cd Source ; make clean )
make[5]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD/Source'
make[5]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD/Source'
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD'
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/SuiteSparse_config'
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/SuiteSparse_config'
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD'
( cd Lib ; make )
make[5]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD/Lib'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_aat.c -o cholmod_aat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_add.c -o cholmod_add.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_band.c -o cholmod_band.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
In file included from ../Core/cholmod_change_factor.c:116:0:
../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
                  ^
In file included from ../Core/cholmod_change_factor.c:118:0:
../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
                  ^
../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic':
../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]
     Int nsuper, xsize, ssize ;
                 ^
../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric':
../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]
     Int *Lp, *Li, *Lnz ;
               ^
../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]
     Int *Lp, *Li, *Lnz ;
          ^
../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
                  ^
../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
             ^
../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric':
../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]
     Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;
         ^
../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]
     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
                     ^
../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]
     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
          ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_common.c -o cholmod_common.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_complex.c -o cholmod_complex.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_copy.c -o cholmod_copy.o
../Core/cholmod_copy.c: In function 'cholmod_copy':
../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, up, lo, values, diag, astype ;
                         ^
../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, up, lo, values, diag, astype ;
                     ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_dense.c -o cholmod_dense.o
In file included from ../Core/cholmod_dense.c:48:0:
../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                            ^
../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                       ^
../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
             ^
In file included from ../Core/cholmod_dense.c:50:0:
../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                            ^
../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                       ^
../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                            ^
../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                       ^
../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                            ^
../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                  ^
In file included from ../Core/cholmod_dense.c:52:0:
../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                            ^
../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                       ^
../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                            ^
../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                       ^
../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                            ^
../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                  ^
../Core/cholmod_dense.c: In function 'cholmod_eye':
../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
     Int i, n, nz ;
               ^
../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz ;
                  ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_error.c -o cholmod_error.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_factor.c -o cholmod_factor.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_memory.c -o cholmod_memory.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
../Core/cholmod_sparse.c: In function 'cholmod_copy_sparse':
../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
     Int p, pend, j, ncol, packed, nzmax, nz, xtype ;
                                   ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
In file included from ../Core/cholmod_transpose.c:124:0:
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                       ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
             ^
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                       ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
             ^
In file included from ../Core/cholmod_transpose.c:126:0:
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
In file included from ../Core/cholmod_transpose.c:128:0:
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
In file included from ../Core/cholmod_transpose.c:131:0:
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
In file included from ../Core/cholmod_transpose.c:133:0:
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
In file included from ../Core/cholmod_transpose.c:136:0:
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
In file included from ../Core/cholmod_triplet.c:108:0:
../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                            ^
../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                       ^
../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                  ^
../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
             ^
In file included from ../Core/cholmod_triplet.c:110:0:
../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                            ^
../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                  ^
In file included from ../Core/cholmod_triplet.c:112:0:
../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                            ^
../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                  ^
../Core/cholmod_triplet.c: In function 'cholmod_triplet_to_sparse':
../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
     Int i, j, p, k, stype, nrow, ncol, nz, ok ;
                                            ^
../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]
     Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;
                    ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Core/cholmod_version.c -o cholmod_version.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Check/cholmod_check.c -o cholmod_check.o
../Check/cholmod_check.c: In function 'check_common':
../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]
     Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;
                                                             ^
../Check/cholmod_check.c: In function 'check_dense':
../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
     Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;
                                     ^
../Check/cholmod_check.c: In function 'check_factor':
../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]
  ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;
  ^
../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable]
  count, precise, init_print, ilast, lnz, head, tail, jprev, plast,
         ^
../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]
     Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,
                                      ^
../Check/cholmod_check.c: In function 'check_factor.constprop':
../Check/cholmod_check.c:1934:48: warning: 'psxend' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     || (for_cholesky && psxend - psx != nsrow * nscol))
                                                ^
../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized]
  jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol,
                                                       ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Check/cholmod_read.c -o cholmod_read.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Check/cholmod_write.c -o cholmod_write.o
../Check/cholmod_write.c: In function 'cholmod_write_sparse':
../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,
                                 ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
../Cholesky/cholmod_analyze.c: In function 'cholmod_analyze_p2':
../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
     Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,
                                                                     ^
../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]
     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
                                             ^
../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]
     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
                                   ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
../Cholesky/cholmod_factorize.c: In function 'cholmod_factorize_p':
../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;
                                     ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
In file included from ../Cholesky/cholmod_rowfac.c:164:0:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:166:0:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:168:0:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
In file included from ../Cholesky/cholmod_rowfac.c:172:0:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:174:0:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:176:0:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
In file included from ../Cholesky/cholmod_solve.c:66:0:
../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Yx, *Yz ;
                       ^
In file included from ../Cholesky/cholmod_solve.c:69:0:
../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Yx, *Yz ;
                       ^
../Cholesky/cholmod_solve.c: In function 'iperm':
../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]
     Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;
             ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
In file included from ../MatrixOps/cholmod_sdmult.c:46:0:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
                 ^
../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                               ^
../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                      ^
../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                            ^
../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                  ^
In file included from ../MatrixOps/cholmod_sdmult.c:48:0:
../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
                 ^
../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                               ^
../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                      ^
../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                            ^
../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                  ^
In file included from ../MatrixOps/cholmod_sdmult.c:50:0:
../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
                 ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Modify/cholmod_updown.c -o cholmod_updown.o
../Modify/cholmod_updown.c: In function 'cholmod_updown_mask':
../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]
  *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;
                                 ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
In file included from ../Supernodal/cholmod_super_numeric.c:78:0:
../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                                 ^
../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                            ^
In file included from ../Supernodal/cholmod_super_numeric.c:80:0:
../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                                 ^
../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                            ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
In file included from ../Supernodal/cholmod_super_solve.c:28:0:
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
In file included from ../Supernodal/cholmod_super_solve.c:30:0:
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_super_symbolic2':
../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]
   Int totsize ;
       ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
In file included from ../Core/cholmod_change_factor.c:116:0:
../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
                  ^
In file included from ../Core/cholmod_change_factor.c:118:0:
../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
                  ^
../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic':
../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]
     Int nsuper, xsize, ssize ;
                 ^
../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric':
../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]
     Int *Lp, *Li, *Lnz ;
               ^
../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]
     Int *Lp, *Li, *Lnz ;
          ^
../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
                  ^
../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]
     double *Lx, *Lz ;
             ^
../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric':
../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]
     Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;
         ^
../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]
     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
                     ^
../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]
     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
          ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
../Core/cholmod_copy.c: In function 'cholmod_l_copy':
../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, up, lo, values, diag, astype ;
                         ^
../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, up, lo, values, diag, astype ;
                     ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
In file included from ../Core/cholmod_dense.c:48:0:
../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                            ^
../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                       ^
../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
             ^
In file included from ../Core/cholmod_dense.c:50:0:
../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                            ^
../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                       ^
../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                            ^
../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                       ^
../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                            ^
../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                  ^
In file included from ../Core/cholmod_dense.c:52:0:
../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                            ^
../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Xx, *Az, *Xz ;
                       ^
../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                            ^
../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Cx, *Xz, *Cz ;
                       ^
../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                            ^
../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz, *Yx, *Yz ;
                  ^
../Core/cholmod_dense.c: In function 'cholmod_l_eye':
../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
     Int i, n, nz ;
               ^
../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Xx, *Xz ;
                  ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
../Core/cholmod_sparse.c: In function 'cholmod_l_copy_sparse':
../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
     Int p, pend, j, ncol, packed, nzmax, nz, xtype ;
                                   ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
In file included from ../Core/cholmod_transpose.c:124:0:
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                       ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
             ^
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                       ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
             ^
In file included from ../Core/cholmod_transpose.c:126:0:
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
In file included from ../Core/cholmod_transpose.c:128:0:
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
In file included from ../Core/cholmod_transpose.c:131:0:
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                            ^
../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Fx, *Fz ;
                  ^
In file included from ../Core/cholmod_transpose.c:133:0:
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
In file included from ../Core/cholmod_transpose.c:136:0:
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                                     ^
../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                                                        ^
../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
                     ^
../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                               ^
../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
                          ^
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
                          ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
In file included from ../Core/cholmod_triplet.c:108:0:
../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                            ^
../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                       ^
../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                  ^
../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
             ^
In file included from ../Core/cholmod_triplet.c:110:0:
../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                            ^
../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                  ^
In file included from ../Core/cholmod_triplet.c:112:0:
../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                            ^
../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
     double *Rx, *Rz, *Tx, *Tz ;
                  ^
../Core/cholmod_triplet.c: In function 'cholmod_l_triplet_to_sparse':
../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
     Int i, j, p, k, stype, nrow, ncol, nz, ok ;
                                            ^
../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]
     Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;
                    ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
../Check/cholmod_check.c: In function 'check_common':
../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]
     Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;
                                                             ^
../Check/cholmod_check.c: In function 'check_dense':
../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
     Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;
                                     ^
../Check/cholmod_check.c: In function 'check_factor':
../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]
  ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;
  ^
../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable]
  count, precise, init_print, ilast, lnz, head, tail, jprev, plast,
         ^
../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]
     Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,
                                      ^
../Check/cholmod_check.c: In function 'check_factor.constprop':
../Check/cholmod_check.c:1934:48: warning: 'psxend' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     || (for_cholesky && psxend - psx != nsrow * nscol))
                                                ^
../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized]
  jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol,
                                                       ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
../Check/cholmod_write.c: In function 'cholmod_l_write_sparse':
../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,
                                 ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
../Cholesky/cholmod_analyze.c: In function 'cholmod_l_analyze_p2':
../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
     Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,
                                                                     ^
../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]
     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
                                             ^
../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]
     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
                                   ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
../Cholesky/cholmod_factorize.c: In function 'cholmod_l_factorize_p':
../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]
     Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;
                                     ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
In file included from ../Cholesky/cholmod_rowfac.c:164:0:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:166:0:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:168:0:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
In file included from ../Cholesky/cholmod_rowfac.c:172:0:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:174:0:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                                ^
../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                                      ^
../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                            ^
../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
                  ^
In file included from ../Cholesky/cholmod_rowfac.c:176:0:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
                                              ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
In file included from ../Cholesky/cholmod_solve.c:66:0:
../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Yx, *Yz ;
                       ^
In file included from ../Cholesky/cholmod_solve.c:69:0:
../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Yx, *Yz ;
                       ^
../Cholesky/cholmod_solve.c: In function 'iperm':
../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]
     Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;
             ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
In file included from ../MatrixOps/cholmod_sdmult.c:46:0:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
                 ^
../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                               ^
../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                      ^
../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                            ^
../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                  ^
In file included from ../MatrixOps/cholmod_sdmult.c:48:0:
../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
                 ^
../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                               ^
../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                                      ^
../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                            ^
../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
                  ^
In file included from ../MatrixOps/cholmod_sdmult.c:50:0:
../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
                 ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
../Modify/cholmod_updown.c: In function 'cholmod_l_updown_mask':
../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]
  *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;
                                 ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
In file included from ../Supernodal/cholmod_super_numeric.c:78:0:
../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                                 ^
../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                            ^
In file included from ../Supernodal/cholmod_super_numeric.c:80:0:
../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                                 ^
../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
                            ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
In file included from ../Supernodal/cholmod_super_solve.c:28:0:
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
In file included from ../Supernodal/cholmod_super_solve.c:30:0:
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  nsrow2, n, ps2, j, i, d, nrhs ;
          ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_l_super_symbolic2':
../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]
   Int totsize ;
       ^
ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o 
ar: `u' modifier ignored since `D' is the default (see `U')
make[5]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD'
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD'
( cd Source ; make lib )
make[5]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD/Source'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c colamd_global.c -o colamd_global.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c colamd.c -o colamd.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c colamd.c -o colamd_l.o
ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[5]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD/Source'
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD'
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD'
( cd Source ; make lib )
make[5]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD/Source'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_1.c -o amd_i_1.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_2.c -o amd_i_2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_order.c -o amd_i_order.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_control.c -o amd_i_control.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_info.c -o amd_i_info.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDINT -c amd_global.c -o amd_i_global.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -I../Include -DDLONG -c amd_global.c -o amd_l_global.o
ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o 
ar: `u' modifier ignored since `D' is the default (see `U')
make[5]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD/Source'
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD'
make[4]: Entering directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/SuiteSparse_config'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG -DNTIMER -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c SuiteSparse_config.c -o SuiteSparse_config.o
ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[4]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/SuiteSparse_config'
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src'
installing to /builddir/build/BUILD/R-3.1.3/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'image' from package 'graphics' in package 'Matrix'
Creating a generic function for 'solve' from package 'base' in package 'Matrix'
Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
Creating a generic function for 'determinant' from package 'base' in package 'Matrix'
Creating a generic function for 'update' from package 'stats' in package 'Matrix'
Creating a generic function for 'as.vector' from package 'base' in package 'Matrix'
Creating a generic function for 't' from package 'base' in package 'Matrix'
Creating a generic function for 'diag' from package 'base' in package 'Matrix'
Creating a generic function for 'as.matrix' from package 'base' in package 'Matrix'
Creating a generic function for 'as.array' from package 'base' in package 'Matrix'
Creating a generic function for 'head' from package 'utils' in package 'Matrix'
Creating a generic function for 'tail' from package 'utils' in package 'Matrix'
Creating a generic function for 'drop' from package 'base' in package 'Matrix'
Creating a generic function for 'mean' from package 'base' in package 'Matrix'
Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
Creating a generic function for 'isSymmetric' from package 'base' in package 'Matrix'
Creating a generic function for 'unname' from package 'base' in package 'Matrix'
Creating a generic function for 'chol' from package 'base' in package 'Matrix'
Creating a generic function for 'norm' from package 'base' in package 'Matrix'
Creating a generic function for 'rcond' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
Creating a generic function for 'all.equal' from package 'base' in package 'Matrix'
Creating a generic function for 'diff' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
Creating a generic function for 'qr' from package 'base' in package 'Matrix'
Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
Creating a generic function for 'crossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'print' from package 'base' in package 'Matrix'
Creating a generic function for 'summary' from package 'base' in package 'Matrix'
Creating a generic function for 'which' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM"
in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
Creating a generic function for 'format' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
** help
*** installing help indices
  converting help for package 'Matrix'
    finding HTML links ... done
    BunchKaufman-methods                    html  
    CAex                                    html  
    CHMfactor-class                         html  
    Cholesky-class                          html  
    Cholesky                                html  
    CsparseMatrix-class                     html  
    Diagonal                                html  
    Hilbert                                 html  
    KNex                                    html  
    KhatriRao                               html  
    LU-class                                html  
    Matrix-class                            html  
    Matrix                                  html  
    MatrixFactorization-class               html  
    RsparseMatrix-class                     html  
    Schur-class                             html  
    Schur                                   html  
    SparseM-conv                            html  
    Subassign-methods                       html  
    TsparseMatrix-class                     html  
    USCounties                              html  
    Xtrct-methods                           html  
    abIndex-class                           html  
Rd warning: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/man/abIndex-class.Rd:81: missing file link 'Ops'
    abIseq                                  html  
    all-methods                             html  
    all.equal-methods                       html  
    atomicVector-class                      html  
    band                                    html  
    bandSparse                              html  
    bdiag                                   html  
    cBind                                   html  
    chol                                    html  
    chol2inv-methods                        html  
    colSums                                 html  
    compMatrix-class                        html  
    condest                                 html  
    dMatrix-class                           html  
    ddenseMatrix-class                      html  
    ddiMatrix-class                         html  
    denseMatrix-class                       html  
    dgCMatrix-class                         html  
    dgRMatrix-class                         html  
    dgTMatrix-class                         html  
    dgeMatrix-class                         html  
    diagU2N                                 html  
    diagonalMatrix-class                    html  
    dpoMatrix-class                         html  
    drop0                                   html  
    dsCMatrix-class                         html  
    dsRMatrix-class                         html  
    dsparseMatrix-class                     html  
    dsyMatrix-class                         html  
    dtCMatrix-class                         html  
    dtRMatrix-class-def                     html  
    dtpMatrix-class                         html  
    dtrMatrix-class                         html  
    expand                                  html  
    expm                                    html  
    externalFormats                         html  
    facmul                                  html  
    forceSymmetric                          html  
    formatSparseM                           html  
    generalMatrix-class                     html  
    graph2T                                 html  
    image-methods                           html  
Rd warning: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/man/image-methods.Rd:48: missing file link 'panel.levelplot.raster'
    indMatrix-class                         html  
    index-class                             html  
    invPerm                                 html  
    is.na-methods                           html  
    is.null.DN                              html  
    isSymmetric-methods                     html  
    isTriangular                            html  
    kronecker-methods                       html  
    ldenseMatrix-class                      html  
    ldiMatrix-class                         html  
    lgeMatrix-class                         html  
    lsparseMatrix-classes                   html  
    lsyMatrix-class                         html  
    ltrMatrix-class                         html  
    lu                                      html  
    matrix-products                         html  
Rd warning: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/man/matrix-products.Rd:332: missing file link 'tcrossprod'
    nMatrix-class                           html  
    ndenseMatrix-class                      html  
    nearPD                                  html  
    ngeMatrix-class                         html  
    nnzero                                  html  
    norm                                    html  
    nsparseMatrix-classes                   html  
    nsyMatrix-class                         html  
    ntrMatrix-class                         html  
    number-class                            html  
    pMatrix-class                           html  
    printSpMatrix                           html  
    qr-methods                              html  
    rankMatrix                              html  
    rcond                                   html  
    rep2abI                                 html  
    replValue-class                         html  
    rleDiff-class                           html  
    rsparsematrix                           html  
    solve-methods                           html  
    spMatrix                                html  
    sparse.model.matrix                     html  
    sparseLU-class                          html  
    sparseMatrix-class                      html  
    sparseMatrix                            html  
    sparseQR-class                          html  
    sparseVector-class                      html  
    sparseVector                            html  
    symmetricMatrix-class                   html  
    symmpart                                html  
    triangularMatrix-class                  html  
    unpack                                  html  
    unused-classes                          html  
    updown                                  html  
** building package indices
Loading required package: Matrix
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
Making 'packages.html' ... done
begin installing recommended package nlme
* installing *source* package 'nlme' ...
** package 'nlme' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmplXqPCN/R.INSTALL1d61dae5281/nlme/src'
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c chol.f -o chol.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c corStruct.c -o corStruct.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gnls.c -o gnls.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c matrix.c -o matrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c nlOptimizer.c -o nlOptimizer.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c nlme.c -o nlme.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c nlmefit.c -o nlmefit.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c nls.c -o nls.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fvisibility=hidden -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pdMat.c -o pdMat.o
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c rs.f -o rs.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmplXqPCN/R.INSTALL1d61dae5281/nlme/src'
installing to /builddir/build/BUILD/R-3.1.3/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nlme'
    finding HTML links ... done
    ACF                                     html  
    ACF.gls                                 html  
    ACF.lme                                 html  
    Alfalfa                                 html  
    Assay                                   html  
    BodyWeight                              html  
    Cefamandole                             html  
    Coef                                    html  
    Covariate                               html  
    Covariate.varFunc                       html  
    Dialyzer                                html  
    Dim                                     html  
    Dim.corSpatial                          html  
    Dim.corStruct                           html  
    Dim.pdMat                               html  
    Earthquake                              html  
    Extract.pdMat                           html  
    Fatigue                                 html  
    Gasoline                                html  
    Glucose                                 html  
    Glucose2                                html  
    Gun                                     html  
    IGF                                     html  
    Initialize                              html  
    Initialize.corStruct                    html  
    Initialize.glsStruct                    html  
    Initialize.lmeStruct                    html  
    Initialize.reStruct                     html  
    Initialize.varFunc                      html  
    LDEsysMat                               html  
    Machines                                html  
    MathAchSchool                           html  
    MathAchieve                             html  
    Matrix                                  html  
    Matrix.pdMat                            html  
    Matrix.reStruct                         html  
    Meat                                    html  
    Milk                                    html  
    Muscle                                  html  
    Names                                   html  
    Names.formula                           html  
    Names.pdBlocked                         html  
    Names.pdMat                             html  
    Names.reStruct                          html  
    Nitrendipene                            html  
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    RatPupWeight                            html  
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    Tetracycline1                           html  
    Tetracycline2                           html  
    VarCorr                                 html  
    Variogram                               html  
    Variogram.corExp                        html  
    Variogram.corGaus                       html  
    Variogram.corLin                        html  
    Variogram.corRatio                      html  
    Variogram.corSpatial                    html  
    Variogram.corSpher                      html  
    Variogram.default                       html  
    Variogram.gls                           html  
    Variogram.lme                           html  
    Wafer                                   html  
    Wheat                                   html  
    Wheat2                                  html  
    allCoef                                 html  
    anova.gls                               html  
    anova.lme                               html  
    as.matrix.corStruct                     html  
    as.matrix.pdMat                         html  
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    augPred                                 html  
    balancedGrouped                         html  
    bdf                                     html  
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    coef.varFunc                            html  
    collapse                                html  
    collapse.groupedData                    html  
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    corAR1                                  html  
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    corCAR1                                 html  
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    corFactor.corStruct                     html  
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    corMatrix.corStruct                     html  
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    corMatrix.reStruct                      html  
    corNatural                              html  
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    fitted.glsStruct                        html  
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    fitted.lmeStruct                        html  
    fitted.nlmeStruct                       html  
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    formula.pdBlocked                       html  
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    gapply                                  html  
    getCovariate                            html  
    getCovariate.corStruct                  html  
    getCovariate.data.frame                 html  
    getCovariate.varFunc                    html  
    getCovariateFormula                     html  
    getData                                 html  
    getData.gls                             html  
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    getGroups                               html  
    getGroups.corStruct                     html  
    getGroups.data.frame                    html  
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    getGroups.lme                           html  
    getGroups.varFunc                       html  
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    getResponse                             html  
    getResponseFormula                      html  
    getVarCov                               html  
    gls-internal                            html  
    gls                                     html  
    glsControl                              html  
    glsObject                               html  
    glsStruct                               html  
    gnls                                    html  
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    lme.groupedData                         html  
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    logDet                                  html  
    logDet.corStruct                        html  
    logDet.pdMat                            html  
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    logLik.corStruct                        html  
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    logLik.gnlsStruct                       html  
    logLik.lmList                           html  
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    logLik.reStruct                         html  
    logLik.varFunc                          html  
    model.matrix.reStruct                   html  
    needUpdate                              html  
    needUpdate.modelStruct                  html  
    nlme                                    html  
    nlme.nlsList                            html  
    nlmeControl                             html  
    nlmeObject                              html  
    nlmeStruct                              html  
    nlsList                                 html  
    nlsList.selfStart                       html  
    pairs.compareFits                       html  
    pairs.lmList                            html  
    pairs.lme                               html  
    pdBlocked                               html  
    pdClasses                               html  
    pdCompSymm                              html  
    pdConstruct                             html  
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    pdNatural                               html  
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    plot.ACF                                html  
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    plot.gls                                html  
    plot.intervals.lmList                   html  
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    plot.lme                                html  
    plot.nffGroupedData                     html  
    plot.nfnGroupedData                     html  
    plot.nmGroupedData                      html  
    plot.ranef.lmList                       html  
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    pooledSD                                html  
    predict.gls                             html  
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    print.summary.pdMat                     html  
    print.varFunc                           html  
    qqnorm.gls                              html  
    qqnorm.lme                              html  
    quinModel                               html  
    random.effects                          html  
    ranef.lmList                            html  
    ranef.lme                               html  
    reStruct                                html  
    recalc                                  html  
    recalc.corStruct                        html  
    recalc.modelStruct                      html  
    recalc.reStruct                         html  
    recalc.varFunc                          html  
    residuals.gls                           html  
    residuals.glsStruct                     html  
    residuals.gnlsStruct                    html  
    residuals.lmList                        html  
    residuals.lme                           html  
    residuals.lmeStruct                     html  
    residuals.nlmeStruct                    html  
    simulate.lme                            html  
    solve.pdMat                             html  
    solve.reStruct                          html  
    splitFormula                            html  
    summary.corStruct                       html  
    summary.gls                             html  
    summary.lmList                          html  
    summary.lme                             html  
    summary.modelStruct                     html  
    summary.nlsList                         html  
    summary.pdMat                           html  
    summary.varFunc                         html  
    update.modelStruct                      html  
    update.varFunc                          html  
    varClasses                              html  
    varComb                                 html  
    varConstPower                           html  
    varExp                                  html  
    varFixed                                html  
    varFunc                                 html  
    varIdent                                html  
    varPower                                html  
    varWeights                              html  
    varWeights.glsStruct                    html  
    varWeights.lmeStruct                    html  
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
Making 'packages.html' ... done
begin installing recommended package survival
* installing *source* package 'survival' ...
** package 'survival' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpNG0tjD/R.INSTALL1e2b5ba02002/survival/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agexact.c -o agexact.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agfit4.c -o agfit4.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agfit5.c -o agfit5.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agmart.c -o agmart.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agmart2.c -o agmart2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agmart3.c -o agmart3.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agscore.c -o agscore.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agsurv3.c -o agsurv3.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agsurv4.c -o agsurv4.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c agsurv5.c -o agsurv5.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chinv2.c -o chinv2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chinv3.c -o chinv3.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cholesky2.c -o cholesky2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cholesky3.c -o cholesky3.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chsolve2.c -o chsolve2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chsolve3.c -o chsolve3.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c concordance1.c -o concordance1.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cox_Rcallback.c -o cox_Rcallback.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxcount1.c -o coxcount1.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxdetail.c -o coxdetail.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxexact.c -o coxexact.o
coxexact.c: In function 'coxexact':
coxexact.c:303:22: warning: 'sstart' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 d0 = coxd0(ndeath, nrisk, score+sstart, dmem0, maxdeath);
                      ^
coxexact.c:191:18: warning: 'nrisk' may be used uninitialized in this function [-Wmaybe-uninitialized]
             nrisk++;
                  ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxfit5.c -o coxfit5.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxfit6.c -o coxfit6.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxmart.c -o coxmart.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxmart2.c -o coxmart2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxph_wtest.c -o coxph_wtest.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxsafe.c -o coxsafe.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxscho.c -o coxscho.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxscore.c -o coxscore.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dmatrix.c -o dmatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c doloop.c -o doloop.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pyears1.c -o pyears1.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pyears2.c -o pyears2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pyears3b.c -o pyears3b.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pystep.c -o pystep.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survConcordance.c -o survConcordance.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survdiff2.c -o survdiff2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survfit4.c -o survfit4.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survfitci.c -o survfitci.o
survfitci.c: In function 'survfitci':
survfitci.c:30:14: warning: 'umat' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double **umat;     /* per subject leverage at this time point */
              ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survpenal.c -o survpenal.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survreg6.c -o survreg6.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survreg7.c -o survreg7.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survregc1.c -o survregc1.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c survregc2.c -o survregc2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c tmerge.c -o tmerge.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o tmerge.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpNG0tjD/R.INSTALL1e2b5ba02002/survival/src'
installing to /builddir/build/BUILD/R-3.1.3/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'survival'
    finding HTML links ... done
    Surv                                    html  
    aareg                                   html  
    agreg.fit                               html  
    aml                                     html  
    anova.coxph                             html  
    attrassign                              html  
    basehaz                                 html  
    bladder                                 html  
    cch                                     html  
    cgd                                     html  
    cgd0                                    html  
    clogit                                  html  
    cluster                                 html  
    colon                                   html  
    cox.zph                                 html  
    coxph                                   html  
    coxph.control                           html  
    coxph.detail                            html  
    coxph.object                            html  
    coxph.wtest                             html  
    dsurvreg                                html  
    flchain                                 html  
    frailty                                 html  
    heart                                   html  
    is.ratetable                            html  
    kidney                                  html  
    lines.survfit                           html  
    logan                                   html  
    lung                                    html  
    mgus                                    html  
    mgus2                                   html  
    model.frame.coxph                       html  
    model.matrix.coxph                      html  
    neardate                                html  
    nwtco                                   html  
    ovarian                                 html  
    pbc                                     html  
    pbcseq                                  html  
    plot.aareg                              html  
    plot.cox.zph                            html  
    plot.survfit                            html  
    predict.coxph                           html  
    predict.survreg                         html  
    print.aareg                             html  
    print.summary.coxph                     html  
    print.summary.survexp                   html  
    print.summary.survfit                   html  
    print.survfit                           html  
    pspline                                 html  
    pyears                                  html  
    quantile.survfit                        html  
    ratetable                               html  
    ratetableDate                           html  
    rats                                    html  
    rats2                                   html  
    residuals.coxph                         html  
    residuals.survreg                       html  
    ridge                                   html  
    stanford2                               html  
    strata                                  html  
    summary.aareg                           html  
    summary.coxph                           html  
    summary.survexp                         html  
    summary.survfit                         html  
    survConcordance                         html  
    survSplit                               html  
    survdiff                                html  
    survexp                                 html  
    survexp.fit                             html  
    survexp.us                              html  
    survfit                                 html  
    survfit.coxph                           html  
    survfit.formula                         html  
    survfit.object                          html  
    survfitcoxph.fit                        html  
    survival-internal                       html  
    survobrien                              html  
    survreg                                 html  
    survreg.control                         html  
    survreg.distributions                   html  
    survreg.object                          html  
    survregDtest                            html  
    tcut                                    html  
    tmerge                                  html  
    tobin                                   html  
    transplant                              html  
    untangle.specials                       html  
    uspop2                                  html  
    veteran                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
Making 'packages.html' ... done
begin installing recommended package boot
* installing *source* package 'boot' ...
** package 'boot' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'boot'
    finding HTML links ... done
    EEF.profile                             html  
    Imp.Estimates                           html  
    abc.ci                                  html  
    acme                                    html  
    aids                                    html  
    aircondit                               html  
    amis                                    html  
    aml                                     html  
    beaver                                  html  
    bigcity                                 html  
    boot-practicals                         html  
    boot                                    html  
    boot.array                              html  
    boot.ci                                 html  
    brambles                                html  
    breslow                                 html  
    calcium                                 html  
    cane                                    html  
    capability                              html  
    catsM                                   html  
    cav                                     html  
    cd4                                     html  
    cd4.nested                              html  
    censboot                                html  
    channing                                html  
    claridge                                html  
    cloth                                   html  
    co.transfer                             html  
    coal                                    html  
    control                                 html  
    corr                                    html  
    cum3                                    html  
    cv.glm                                  html  
    darwin                                  html  
    dogs                                    html  
    downs.bc                                html  
    ducks                                   html  
    empinf                                  html  
    envelope                                html  
    exp.tilt                                html  
    fir                                     html  
    freq.array                              html  
    frets                                   html  
    glm.diag                                html  
    glm.diag.plots                          html  
    gravity                                 html  
    hirose                                  html  
    imp.weights                             html  
    inv.logit                               html  
    islay                                   html  
    jack.after.boot                         html  
    k3.linear                               html  
    linear.approx                           html  
    lines.saddle.distn                      html  
    logit                                   html  
    manaus                                  html  
    melanoma                                html  
    motor                                   html  
    neuro                                   html  
    nitrofen                                html  
    nodal                                   html  
    norm.ci                                 html  
    nuclear                                 html  
    paulsen                                 html  
    plot.boot                               html  
    poisons                                 html  
    polar                                   html  
    print.boot                              html  
    print.bootci                            html  
    print.saddle.distn                      html  
    print.simplex                           html  
    remission                               html  
    saddle                                  html  
    saddle.distn                            html  
    saddle.distn.object                     html  
    salinity                                html  
    simplex                                 html  
    simplex.object                          html  
    smooth.f                                html  
    sunspot                                 html  
    survival                                html  
    tau                                     html  
    tilt.boot                               html  
    tsboot                                  html  
    tuna                                    html  
    urine                                   html  
    var.linear                              html  
    wool                                    html  
** building package indices
** testing if installed package can be loaded
* DONE (boot)
Making 'packages.html' ... done
begin installing recommended package cluster
* installing *source* package 'cluster' ...
** package 'cluster' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c clara.c -o clara.o
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c daisy.f -o daisy.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dysta.f -o dysta.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fanny.c -o fanny.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c mona.f -o mona.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pam.c -o pam.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sildist.c -o sildist.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c spannel.c -o spannel.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c twins.c -o twins.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/src'
installing to /builddir/build/BUILD/R-3.1.3/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cluster'
    finding HTML links ... done
    agnes                                   html  
    agnes.object                            html  
    agriculture                             html  
    animals                                 html  
    bannerplot                              html  
    chorSub                                 html  
    clara                                   html  
    clara.object                            html  
    clusGap                                 html  
    clusplot.default                        html  
Rd warning: /tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/man/clusplot.default.Rd:209: missing file link 'cov.mve'
    clusplot.partition                      html  
    cluster-internal                        html  
    coef.hclust                             html  
    daisy                                   html  
    diana                                   html  
    dissimilarity.object                    html  
    ellipsoidhull                           html  
Rd warning: /tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/man/ellipsoidhull.Rd:36: missing file link 'cov.mve'
Rd warning: /tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/man/ellipsoidhull.Rd:87: missing file link 'cov.mve'
    fanny                                   html  
    fanny.object                            html  
    flower                                  html  
    lower.to.upper.tri.inds                 html  
    mona                                    html  
    mona.object                             html  
    pam                                     html  
    pam.object                              html  
    partition.object                        html  
    plantTraits                             html  
    plot.agnes                              html  
Rd warning: /tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/man/plot.agnes.Rd:73: missing file link 'plot.dendrogram'
    plot.diana                              html  
    plot.mona                               html  
    plot.partition                          html  
    pltree                                  html  
    pluton                                  html  
    predict.ellipsoid                       html  
    print.agnes                             html  
    print.clara                             html  
    print.diana                             html  
    print.dissimilarity                     html  
Rd warning: /tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/man/print.dissimilarity.Rd:27: missing file link 'print.dist'
    print.fanny                             html  
    print.mona                              html  
    print.pam                               html  
    ruspini                                 html  
    silhouette                              html  
    sizeDiss                                html  
    summary.agnes                           html  
    summary.clara                           html  
    summary.diana                           html  
    summary.mona                            html  
    summary.pam                             html  
    twins.object                            html  
    volume.ellipsoid                        html  
    votes.repub                             html  
    xclara                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
Making 'packages.html' ... done
begin installing recommended package codetools
* installing *source* package 'codetools' ...
** package 'codetools' successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'codetools'
    finding HTML links ... done
    checkUsage                              html  
    codetools                               html  
    findGlobals                             html  
    showTree                                html  
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
Making 'packages.html' ... done
begin installing recommended package foreign
* installing *source* package 'foreign' ...
** package 'foreign' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpATprLr/R.INSTALL1f2162256a34/foreign/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c R_systat.c -o R_systat.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Rdbfread.c -o Rdbfread.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c Rdbfwrite.c -o Rdbfwrite.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c SASxport.c -o SASxport.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c avl.c -o avl.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dbfopen.c -o dbfopen.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c file-handle.c -o file-handle.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c format.c -o format.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c minitab.c -o minitab.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pfm-read.c -o pfm-read.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sfm-read.c -o sfm-read.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c spss.c -o spss.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c stataread.c -o stataread.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpATprLr/R.INSTALL1f2162256a34/foreign/src'
installing to /builddir/build/BUILD/R-3.1.3/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'foreign'
    finding HTML links ... done
    lookup.xport                            html  
    read.S                                  html  
    read.arff                               html  
    read.dbf                                html  
    read.dta                                html  
    read.epiinfo                            html  
    read.mtp                                html  
    read.octave                             html  
    read.spss                               html  
    read.ssd                                html  
    read.systat                             html  
    read.xport                              html  
    write.arff                              html  
    write.dbf                               html  
    write.dta                               html  
    write.foreign                           html  
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
Making 'packages.html' ... done
begin installing recommended package KernSmooth
* installing *source* package 'KernSmooth' ...
** package 'KernSmooth' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpkpZ4tp/R.INSTALL1f614a7c44a7/KernSmooth/src'
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c blkest.f -o blkest.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c cp.f -o cp.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dgedi.f -o dgedi.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dgefa.f -o dgefa.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c dgesl.f -o dgesl.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c linbin.f -o linbin.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c linbin2D.f -o linbin2D.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c locpoly.f -o locpoly.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c rlbin.f -o rlbin.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c sdiag.f -o sdiag.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gfortran -m32   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules  -c sstdiag.f -o sstdiag.o
f951: Warning: Nonexistent include directory '/usr/lib/gfortran/modules' [-Wmissing-include-dirs]
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpkpZ4tp/R.INSTALL1f614a7c44a7/KernSmooth/src'
installing to /builddir/build/BUILD/R-3.1.3/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'KernSmooth'
    finding HTML links ... done
    bkde                                    html  
    bkde2D                                  html  
    bkfe                                    html  
    dpih                                    html  
    dpik                                    html  
    dpill                                   html  
    locpoly                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
Making 'packages.html' ... done
begin installing recommended package rpart
* installing *source* package 'rpart' ...
** package 'rpart' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpREWd2t/R.INSTALL1f9b83034c3/rpart/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c anova.c -o anova.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c anovapred.c -o anovapred.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c branch.c -o branch.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bsplit.c -o bsplit.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c choose_surg.c -o choose_surg.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fix_cp.c -o fix_cp.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c free_tree.c -o free_tree.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gini.c -o gini.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c graycode.c -o graycode.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c insert_split.c -o insert_split.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c make_cp_list.c -o make_cp_list.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c make_cp_table.c -o make_cp_table.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mysort.c -o mysort.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c nodesplit.c -o nodesplit.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c partition.c -o partition.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c poisson.c -o poisson.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pred_rpart.c -o pred_rpart.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c print_tree.c -o print_tree.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpart.c -o rpart.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpart_callback.c -o rpart_callback.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpartexp.c -o rpartexp.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpartexp2.c -o rpartexp2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpcountup.c -o rpcountup.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpmatrix.c -o rpmatrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rundown.c -o rundown.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rundown2.c -o rundown2.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c surrogate.c -o surrogate.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c usersplit.c -o usersplit.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c xpred.c -o xpred.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c xval.c -o xval.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpREWd2t/R.INSTALL1f9b83034c3/rpart/src'
installing to /builddir/build/BUILD/R-3.1.3/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rpart'
    finding HTML links ... done
    car.test.frame                          html  
    car90                                   html  
    cu.summary                              html  
    kyphosis                                html  
    labels.rpart                            html  
    meanvar.rpart                           html  
    na.rpart                                html  
    path.rpart                              html  
    plot.rpart                              html  
    plotcp                                  html  
    post.rpart                              html  
    predict.rpart                           html  
    print.rpart                             html  
    printcp                                 html  
    prune.rpart                             html  
    residuals.rpart                         html  
    rpart-internal                          html  
    rpart                                   html  
    rpart.control                           html  
    rpart.exp                               html  
    rpart.object                            html  
    rsq.rpart                               html  
    snip.rpart                              html  
    solder                                  html  
    stagec                                  html  
    summary.rpart                           html  
    text.rpart                              html  
    xpred.rpart                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
Making 'packages.html' ... done
begin installing recommended package class
* installing *source* package 'class' ...
** package 'class' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpeA6F5X/R.INSTALL200e2fa014c1/class/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c class.c -o class.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o class.so class.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpeA6F5X/R.INSTALL200e2fa014c1/class/src'
installing to /builddir/build/BUILD/R-3.1.3/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'class'
    finding HTML links ... done
    SOM                                     html  
    batchSOM                                html  
    condense                                html  
    knn                                     html  
    knn.cv                                  html  
    knn1                                    html  
    lvq1                                    html  
    lvq2                                    html  
    lvq3                                    html  
    lvqinit                                 html  
    lvqtest                                 html  
    multiedit                               html  
    olvq1                                   html  
    reduce.nn                               html  
    somgrid                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (class)
Making 'packages.html' ... done
begin installing recommended package nnet
* installing *source* package 'nnet' ...
** package 'nnet' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpYhVda2/R.INSTALL20275168d8a9/nnet/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c nnet.c -o nnet.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o nnet.so nnet.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpYhVda2/R.INSTALL20275168d8a9/nnet/src'
installing to /builddir/build/BUILD/R-3.1.3/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nnet'
    finding HTML links ... done
    class.ind                               html  
    multinom                                html  
    nnet.Hess                               html  
    nnet                                    html  
    predict.nnet                            html  
    which.is.max                            html  
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
Making 'packages.html' ... done
begin installing recommended package spatial
* installing *source* package 'spatial' ...
** package 'spatial' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/RtmpmxzFYT/R.INSTALL20406a74c3b4/spatial/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c krc.c -o krc.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pps.c -o pps.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/RtmpmxzFYT/R.INSTALL20406a74c3b4/spatial/src'
installing to /builddir/build/BUILD/R-3.1.3/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spatial'
    finding HTML links ... done
    Kaver                                   html  
    Kenvl                                   html  
    Kfn                                     html  
    Psim                                    html  
    SSI                                     html  
    Strauss                                 html  
    anova.trls                              html  
    correlogram                             html  
    expcov                                  html  
    ppgetregion                             html  
    ppinit                                  html  
    pplik                                   html  
    ppregion                                html  
    predict.trls                            html  
    prmat                                   html  
    semat                                   html  
    surf.gls                                html  
    surf.ls                                 html  
    trls.influence                          html  
    trmat                                   html  
    variogram                               html  
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
Making 'packages.html' ... done
begin installing recommended package mgcv
* installing *source* package 'mgcv' ...
** package 'mgcv' successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory '/tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/src'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c coxph.c -o coxph.o
coxph.c: In function 'coxlpl':
coxph.c:196:6: warning: 'd2ldA_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     *d2ldA_p;
      ^
coxph.c:194:50: warning: 'd1A_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     *d1gamma_p,*d1eta,xx,xx0,xx1,xx2,xx3,*d1b_p,*d1A_p,
                                                  ^
coxph.c:381:27: warning: 'd1b_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     R_chk_free(d1gamma_p);R_chk_free(d1b_p);
                           ^
coxph.c:380:5: warning: 'd1eta' may be used uninitialized in this function [-Wmaybe-uninitialized]
     R_chk_free(d1eta);R_chk_free(d1gamma);
     ^
coxph.c:381:5: warning: 'd1gamma_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     R_chk_free(d1gamma_p);R_chk_free(d1b_p);
     ^
coxph.c:380:23: warning: 'd1gamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
     R_chk_free(d1eta);R_chk_free(d1gamma);
                       ^
coxph.c:195:33: warning: 'd2b_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     *d2eta,*d2gamma,*d2gamma_p,*d2b_p,
                                 ^
coxph.c:291:23: warning: 'd2gamma_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
        d2gamma_p[off] += d2gamma[i+ off * *n];
                       ^
coxph.c:195:13: warning: 'd2gamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
     *d2eta,*d2gamma,*d2gamma_p,*d2b_p,
             ^
coxph.c:386:5: warning: 'd2eta' may be used uninitialized in this function [-Wmaybe-uninitialized]
     R_chk_free(d2eta);R_chk_free(d2gamma);
     ^
coxph.c:192:11: warning: 'A_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     *b_p,*A_p,*p1,*p2,*p3,*p4,
           ^
coxph.c:334:67: warning: 'b_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 d1H[off] += xx1 * (d1b_p[k + *p *m] * b_p[l] + b_p[k] * d1b_p[l + *p *m]) -
                                                                   ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gdi.c -o gdi.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c init.c -o init.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c magic.c -o magic.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mat.c -o mat.o
mat.c: In function 'bpqr':
mat.c:739:37: warning: 'Aq' may be used uninitialized in this function [-Wmaybe-uninitialized]
           x=0.0; Ak = A + i * n; Aq += n; Ak += k+1;
                                     ^
mat.c:736:8: warning: 'ok_norm' may be used uninitialized in this function [-Wmaybe-uninitialized]
     if (!ok_norm) { /* recompute any column norms that had cancelled badly */ 
        ^
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c matrix.c -o matrix.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mgcv.c -o mgcv.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c misc.c -o misc.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mvn.c -o mvn.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qp.c -o qp.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c soap.c -o soap.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sparse-smooth.c -o sparse-smooth.o
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c tprs.c -o tprs.o
gcc -m32 -shared -L/builddir/build/BUILD/R-3.1.3/lib -Wl,-z,relro -o mgcv.so coxph.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/builddir/build/BUILD/R-3.1.3/lib -lR
make[3]: Leaving directory '/tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/src'
installing to /builddir/build/BUILD/R-3.1.3/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mgcv'
    finding HTML links ... done
    Beta                                    html  
    Predict.matrix                          html  
    Predict.matrix.cr.smooth                html  
    Predict.matrix.soap.film                html  
    Rrank                                   html  
    Tweedie                                 html  
    anova.gam                               html  
    bam                                     html  
Rd warning: /tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/man/bam.Rd:13: missing file link 'parallel'
Rd warning: /tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/man/bam.Rd:124: missing file link 'parLapply'
Rd warning: /tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/man/bam.Rd:174: missing file link 'makeForkCluster'
    bam.update                              html  
    cSplineDes                              html  
    choose.k                                html  
    columb                                  html  
    concurvity                              html  
    coxph                                   html  
    exclude.too.far                         html  
    extract.lme.cov                         html  
    family.mgcv                             html  
    fix.family.link                         html  
    fixDependence                           html  
    formXtViX                               html  
    formula.gam                             html  
    fs.test                                 html  
    full.score                              html  
    gam                                     html  
    gam.check                               html  
    gam.control                             html  
    gam.convergence                         html  
    gam.fit                                 html  
    gam.fit3                                html  
    gam.models                              html  
    gam.outer                               html  
    gam.scale                               html  
    gam.selection                           html  
    gam.side                                html  
    gam.vcomp                               html  
    gam2objective                           html  
    gamObject                               html  
    gamSim                                  html  
    gamm                                    html  
    gaulss                                  html  
    get.var                                 html  
    in.out                                  html  
    inSide                                  html  
    influence.gam                           html  
    initial.sp                              html  
    interpret.gam                           html  
    jagam                                   html  
    ldTweedie                               html  
    linear.functional.terms                 html  
    logLik.gam                              html  
    ls.size                                 html  
    magic                                   html  
    magic.post.proc                         html  
    mgcv-FAQ                                html  
    mgcv-package                            html  
    mgcv-parallel                           html  
Rd warning: /tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/man/mgcv-parallel.Rd:7: missing file link 'parallel'
    model.matrix.gam                        html  
    mono.con                                html  
    mroot                                   html  
    mvn                                     html  
    negbin                                  html  
    new.name                                html  
    notExp                                  html  
    notExp2                                 html  
    null.space.dimension                    html  
    ocat                                    html  
    pcls                                    html  
    pdIdnot                                 html  
    pdTens                                  html  
    pen.edf                                 html  
    place.knots                             html  
    plot.gam                                html  
    polys.plot                              html  
    predict.bam                             html  
Rd warning: /tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/man/predict.bam.Rd:71: missing file link 'parLapply'
    predict.gam                             html  
    print.gam                               html  
    qq.gam                                  html  
    rTweedie                                html  
    random.effects                          html  
    residuals.gam                           html  
    rig                                     html  
    s                                       html  
    scat                                    html  
    slanczos                                html  
    smooth.construct                        html  
    smooth.construct.ad.smooth.spec         html  
    smooth.construct.cr.smooth.spec         html  
    smooth.construct.ds.smooth.spec         html  
    smooth.construct.fs.smooth.spec         html  
    smooth.construct.mrf.smooth.spec        html  
    smooth.construct.ps.smooth.spec         html  
    smooth.construct.re.smooth.spec         html  
    smooth.construct.so.smooth.spec         html  
    smooth.construct.sos.smooth.spec        html  
    smooth.construct.t2.smooth.spec         html  
    smooth.construct.tensor.smooth.spec     html  
    smooth.construct.tp.smooth.spec         html  
    smooth.terms                            html  
    smoothCon                               html  
    sp.vcov                                 html  
    spasm.construct                         html  
    step.gam                                html  
    summary.gam                             html  
    t2                                      html  
    te                                      html  
    tensor.prod.model.matrix                html  
    uniquecombs                             html  
    vcov.gam                                html  
    vis.gam                                 html  
    ziP                                     html  
    ziplss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
Making 'packages.html' ... done
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/Recommended'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library/Recommended'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 1.8.0_40
Java home path   : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.40-19.b12.fc22.i386/jre
Java compiler    : not present
Java headers gen.: 
Java archive tool: 
trying to compile and link a JNI program 
detected JNI cpp flags    : 
detected JNI linker flags : -L$(JAVA_HOME)/lib/i386/server -ljvm
make[2]: Entering directory '/tmp/Rjavareconf.yDp543'
gcc -m32 -I/builddir/build/BUILD/R-3.1.3/include -DNDEBUG  -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c conftest.c -o conftest.o
conftest.c:1:17: fatal error: jni.h: No such file or directory
compilation terminated.
/builddir/build/BUILD/R-3.1.3/etc/Makeconf:133: recipe for target 'conftest.o' failed
make[2]: *** [conftest.o] Error 1
make[2]: Leaving directory '/tmp/Rjavareconf.yDp543'
Unable to compile a JNI program
JAVA_HOME        : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.40-19.b12.fc22.i386/jre
Java library path: 
JNI cpp flags    : 
JNI linker flags : 
Updating Java configuration in /builddir/build/BUILD/R-3.1.3
Done.
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3'
+ cd src/nmath/standalone
+ make
(cd ../../include; make Rmath.h)
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/include'
make[1]: 'Rmath.h' is up to date.
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/include'
Copying source files
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/nmath/standalone'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mlutils.c -o mlutils.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c d1mach.c -o d1mach.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c i1mach.c -o i1mach.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fmax2.c -o fmax2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fmin2.c -o fmin2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fprec.c -o fprec.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fround.c -o fround.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ftrunc.c -o ftrunc.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sign.c -o sign.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fsign.c -o fsign.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c imax2.c -o imax2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c imin2.c -o imin2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chebyshev.c -o chebyshev.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c log1p.c -o log1p.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c expm1.c -o expm1.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lgammacor.c -o lgammacor.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gammalims.c -o gammalims.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c stirlerr.c -o stirlerr.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bd0.c -o bd0.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gamma.c -o gamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lgamma.c -o lgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gamma_cody.c -o gamma_cody.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c beta.c -o beta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lbeta.c -o lbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c polygamma.c -o polygamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cospi.c -o cospi.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_i.c -o bessel_i.o
In file included from bessel_i.c:26:0:
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_j.c -o bessel_j.o
In file included from bessel_j.c:27:0:
bessel_j.c: In function 'bessel_j':
bessel_j.c:80:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:80:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:80:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:80:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:127:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:127:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:127:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:127:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_k.c -o bessel_k.o
In file included from bessel_k.c:27:0:
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_y.c -o bessel_y.o
In file included from bessel_y.c:26:0:
bessel_y.c: In function 'bessel_y':
bessel_y.c:87:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:87:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:87:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:87:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:136:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:136:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:136:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:136:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c choose.c -o choose.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c snorm.c -o snorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sexp.c -o sexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgamma.c -o dgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pgamma.c -o pgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qgamma.c -o qgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rgamma.c -o rgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dbeta.c -o dbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pbeta.c -o pbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qbeta.c -o qbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rbeta.c -o rbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dunif.c -o dunif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c punif.c -o punif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qunif.c -o qunif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c runif.c -o runif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnorm.c -o dnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnorm.c -o pnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnorm.c -o qnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnorm.c -o rnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dlnorm.c -o dlnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plnorm.c -o plnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qlnorm.c -o qlnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rlnorm.c -o rlnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c df.c -o df.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pf.c -o pf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qf.c -o qf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rf.c -o rf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnf.c -o dnf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dt.c -o dt.o
dt.c: In function 'dt':
dt.c:80:44: warning: 'ax' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double I_sqrt_ = (lrg_x2n ? sqrt(n)/ax : exp(-l_x2n));
                                            ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pt.c -o pt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qt.c -o qt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rt.c -o rt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnt.c -o dnt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dchisq.c -o dchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pchisq.c -o pchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qchisq.c -o qchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rchisq.c -o rchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnchisq.c -o rnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dbinom.c -o dbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pbinom.c -o pbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qbinom.c -o qbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rbinom.c -o rbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rmultinom.c -o rmultinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dcauchy.c -o dcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pcauchy.c -o pcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qcauchy.c -o qcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rcauchy.c -o rcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dexp.c -o dexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pexp.c -o pexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qexp.c -o qexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rexp.c -o rexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgeom.c -o dgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pgeom.c -o pgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qgeom.c -o qgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rgeom.c -o rgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dhyper.c -o dhyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c phyper.c -o phyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qhyper.c -o qhyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rhyper.c -o rhyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnbinom.c -o dnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnbinom.c -o pnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnbinom.c -o qnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnbinom.c -o rnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dpois.c -o dpois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ppois.c -o ppois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qpois.c -o qpois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpois.c -o rpois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dweibull.c -o dweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pweibull.c -o pweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qweibull.c -o qweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rweibull.c -o rweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dlogis.c -o dlogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plogis.c -o plogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qlogis.c -o qlogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rlogis.c -o rlogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnchisq.c -o dnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnchisq.c -o pnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnchisq.c -o qnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnbeta.c -o dnbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnbeta.c -o pnbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnbeta.c -o qnbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnf.c -o pnf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnt.c -o pnt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnf.c -o qnf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnt.c -o qnt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ptukey.c -o ptukey.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qtukey.c -o qtukey.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c toms708.c -o toms708.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c wilcox.c -o wilcox.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c signrank.c -o signrank.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/nmath/standalone'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c mlutils.c -o mlutils.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c d1mach.c -o d1mach.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c i1mach.c -o i1mach.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fmax2.c -o fmax2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fmin2.c -o fmin2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fprec.c -o fprec.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fround.c -o fround.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ftrunc.c -o ftrunc.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sign.c -o sign.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c fsign.c -o fsign.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c imax2.c -o imax2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c imin2.c -o imin2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c chebyshev.c -o chebyshev.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c log1p.c -o log1p.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c expm1.c -o expm1.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lgammacor.c -o lgammacor.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gammalims.c -o gammalims.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c stirlerr.c -o stirlerr.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bd0.c -o bd0.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gamma.c -o gamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lgamma.c -o lgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c gamma_cody.c -o gamma_cody.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c beta.c -o beta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c lbeta.c -o lbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c polygamma.c -o polygamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c cospi.c -o cospi.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_i.c -o bessel_i.lo
In file included from bessel_i.c:26:0:
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_j.c -o bessel_j.lo
In file included from bessel_j.c:27:0:
bessel_j.c: In function 'bessel_j':
bessel_j.c:80:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:80:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:80:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:80:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:127:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:127:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:127:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:127:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_k.c -o bessel_k.lo
In file included from bessel_k.c:27:0:
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c bessel_y.c -o bessel_y.lo
In file included from bessel_y.c:26:0:
bessel_y.c: In function 'bessel_y':
bessel_y.c:87:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:87:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:87:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:87:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:136:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:136:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:136:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:136:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c choose.c -o choose.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c snorm.c -o snorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c sexp.c -o sexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgamma.c -o dgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pgamma.c -o pgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qgamma.c -o qgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rgamma.c -o rgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dbeta.c -o dbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pbeta.c -o pbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qbeta.c -o qbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rbeta.c -o rbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dunif.c -o dunif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c punif.c -o punif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qunif.c -o qunif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c runif.c -o runif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnorm.c -o dnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnorm.c -o pnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnorm.c -o qnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnorm.c -o rnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dlnorm.c -o dlnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plnorm.c -o plnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qlnorm.c -o qlnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rlnorm.c -o rlnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c df.c -o df.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pf.c -o pf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qf.c -o qf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rf.c -o rf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnf.c -o dnf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dt.c -o dt.lo
dt.c: In function 'dt':
dt.c:80:44: warning: 'ax' may be used uninitialized in this function [-Wmaybe-uninitialized]
     double I_sqrt_ = (lrg_x2n ? sqrt(n)/ax : exp(-l_x2n));
                                            ^
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pt.c -o pt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qt.c -o qt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rt.c -o rt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnt.c -o dnt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dchisq.c -o dchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pchisq.c -o pchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qchisq.c -o qchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rchisq.c -o rchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnchisq.c -o rnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dbinom.c -o dbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pbinom.c -o pbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qbinom.c -o qbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rbinom.c -o rbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rmultinom.c -o rmultinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dcauchy.c -o dcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pcauchy.c -o pcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qcauchy.c -o qcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rcauchy.c -o rcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dexp.c -o dexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pexp.c -o pexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qexp.c -o qexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rexp.c -o rexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dgeom.c -o dgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pgeom.c -o pgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qgeom.c -o qgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rgeom.c -o rgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dhyper.c -o dhyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c phyper.c -o phyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qhyper.c -o qhyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rhyper.c -o rhyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnbinom.c -o dnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnbinom.c -o pnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnbinom.c -o qnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rnbinom.c -o rnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dpois.c -o dpois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ppois.c -o ppois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qpois.c -o qpois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rpois.c -o rpois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dweibull.c -o dweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pweibull.c -o pweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qweibull.c -o qweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rweibull.c -o rweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dlogis.c -o dlogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c plogis.c -o plogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qlogis.c -o qlogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c rlogis.c -o rlogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnchisq.c -o dnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnchisq.c -o pnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnchisq.c -o qnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c dnbeta.c -o dnbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnbeta.c -o pnbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnbeta.c -o qnbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnf.c -o pnf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c pnt.c -o pnt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnf.c -o qnf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qnt.c -o qnt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c ptukey.c -o ptukey.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c qtukey.c -o qtukey.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c toms708.c -o toms708.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c wilcox.c -o wilcox.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c signrank.c -o signrank.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -c std_unif.c -o std_unif.lo
gcc -m32 -shared -fopenmp -Wl,-z,relro  -o libRmath.so  mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
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tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
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t is guar-an-teed that
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
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[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
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move
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\T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and 
web-pages gen-er-ated by
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\T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o
m-mended) when writ-ing it
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]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
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t/10 Group \T1/ptm/m/n/10 meth-ods for
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[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
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/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed
Underfull \hbox (badness 4341) in paragraph at lines 11431--11440
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176]
[177]
Underfull \hbox (badness 2253) in paragraph at lines 12383--12385
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[178] [179]
Underfull \hbox (badness 1565) in paragraph at lines 12444--12448
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
Underfull \hbox (badness 10000) in paragraph at lines 12487--12489
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[180] [181]
Underfull \hbox (badness 1466) in paragraph at lines 12625--12628
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[182] [183]
Underfull \hbox (badness 10000) in paragraph at lines 12733--12737
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 12744--12747
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[184] [185] [186]
Underfull \hbox (badness 3965) in paragraph at lines 12991--12995
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197]
Underfull \hbox (badness 4429) in paragraph at lines 13708--13711
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[198]
Underfull \hbox (badness 10000) in paragraph at lines 13794--13796
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so
Underfull \hbox (badness 10000) in paragraph at lines 13800--13804
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[199]
Underfull \hbox (badness 2790) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
[200] [201] [202] [203] [204] [205] [206] [207]
Underfull \hbox (badness 2452) in paragraph at lines 14410--14414
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 14410--14414
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[208] [209]
Underfull \hbox (badness 1092) in paragraph at lines 14561--14566
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[210] [211] [212] [213]
Underfull \hbox (badness 6741) in paragraph at lines 14809--14813
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[214] [215] [216] [217]
Underfull \hbox (badness 1867) in paragraph at lines 15115--15122
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[218] [219] [220] [221]
Underfull \vbox (badness 10000) has occurred while \output is active [222]
[223]
Underfull \hbox (badness 3679) in paragraph at lines 15486--15488
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 1478) in paragraph at lines 15966--15969
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[230] [231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 16214--16216
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[233] [234] [235] [236] [237] [238] [239] [240]
Underfull \hbox (badness 1442) in paragraph at lines 16748--16750
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[241]
Underfull \hbox (badness 2452) in paragraph at lines 16840--16856
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[242] [243] [244] [245] [246] [247]
Underfull \hbox (badness 1248) in paragraph at lines 17247--17250
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[248] [249] [250] [251]
Underfull \hbox (badness 4739) in paragraph at lines 17500--17502
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263]
[264] [265]
Underfull \hbox (badness 10000) in paragraph at lines 18408--18412
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory
Underfull \hbox (badness 2460) in paragraph at lines 18408--18412
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[266]
Underfull \hbox (badness 1509) in paragraph at lines 18543--18550
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages
Underfull \hbox (badness 1354) in paragraph at lines 18543--18550
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and
[267]
Underfull \hbox (badness 1014) in paragraph at lines 18559--18564
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[268] [269] [270] [271] [272] [273] [274] [275] [276] [277]
Underfull \hbox (badness 1264) in paragraph at lines 19273--19278
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[278] [279] [280] [281] [282] [283] [284] [285] [286] [287]
Underfull \hbox (badness 10000) in paragraph at lines 20021--20023
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299]
[300] [301] [302] [303]
Underfull \hbox (badness 1655) in paragraph at lines 21009--21015
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[304] [305]
Underfull \hbox (badness 1484) in paragraph at lines 21170--21178
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[306] [307] [308] [309]
Underfull \hbox (badness 2790) in paragraph at lines 21441--21444
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 21441--21444
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[310] [311] [312] [313]
Underfull \hbox (badness 1194) in paragraph at lines 21720--21723
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[314] [315] [316]
Underfull \hbox (badness 10000) in paragraph at lines 21921--21924
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:
Underfull \hbox (badness 10000) in paragraph at lines 21921--21924
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328]
[329] [330] [331]
Underfull \hbox (badness 1199) in paragraph at lines 22973--22979
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"
Underfull \hbox (badness 2027) in paragraph at lines 22973--22979
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 1038) in paragraph at lines 23512--23521
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially
Underfull \hbox (badness 1881) in paragraph at lines 23522--23525
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 23541--23543
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[340]
Underfull \hbox (badness 10000) in paragraph at lines 23607--23617
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to
Underfull \hbox (badness 2142) in paragraph at lines 23618--23624
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 23631--23636
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 23641--23643
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[341] [342]
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by
[343]
Underfull \hbox (badness 10000) in paragraph at lines 23893--23896
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
Underfull \hbox (badness 2689) in paragraph at lines 23917--23919
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
Underfull \hbox (badness 7203) in paragraph at lines 23950--23953
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and
Underfull \hbox (badness 2735) in paragraph at lines 23960--23971
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),
Underfull \hbox (badness 10000) in paragraph at lines 23960--23971
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.
Underfull \hbox (badness 10000) in paragraph at lines 23973--23980
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to
Underfull \hbox (badness 10000) in paragraph at lines 23973--23980
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a
Underfull \hbox (badness 6380) in paragraph at lines 23973--23980
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like
Underfull \hbox (badness 1082) in paragraph at lines 23973--23980
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[344] [345] [346] [347] [348]
Underfull \hbox (badness 10000) in paragraph at lines 24286--24290
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion
Underfull \hbox (badness 10000) in paragraph at lines 24286--24290
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[349] [350] [351] [352]
Underfull \hbox (badness 1735) in paragraph at lines 24604--24608
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[353] [354] [355] [356] [357] [358] [359] [360] [361]
Underfull \hbox (badness 2726) in paragraph at lines 25128--25131
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373]
Underfull \hbox (badness 1052) in paragraph at lines 25947--25952
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[374] [375] [376] [377] [378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 1533) in paragraph at lines 26675--26678
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395]
[396] [397] [398] [399] [400] [401] [402] [403] [404] [405] [406] [407]
Underfull \hbox (badness 10000) in paragraph at lines 28330--28334
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 28330--28334
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
Underfull \hbox (badness 6188) in paragraph at lines 28352--28354
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 1655) in paragraph at lines 28897--28899
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[416] [417] [418] [419] [420] [421] [422] [423] [424] [425]
Underfull \hbox (badness 10000) in paragraph at lines 29565--29569
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[426] [427] [428]
Underfull \hbox (badness 2302) in paragraph at lines 29798--29805
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,
Underfull \hbox (badness 2837) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing
Underfull \hbox (badness 2980) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,
Underfull \hbox (badness 2181) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[429] [430]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[431]
Underfull \hbox (badness 10000) in paragraph at lines 29979--29985
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[432]
Underfull \hbox (badness 10000) in paragraph at lines 30055--30060
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
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Underfull \hbox (badness 1072) in paragraph at lines 32829--32833
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 32834--32838
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
Underfull \hbox (badness 10000) in paragraph at lines 32862--32868
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 32862--32868
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 32862--32868
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
[472]
Underfull \hbox (badness 3343) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
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Underfull \hbox (badness 10000) in paragraph at lines 33171--33177
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is
Underfull \hbox (badness 1152) in paragraph at lines 33171--33177
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
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Underfull \hbox (badness 3333) in paragraph at lines 34897--34902
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[503] [504] [505] [506] [507] [508] [509] [510] [511]
Underfull \hbox (badness 1472) in paragraph at lines 35504--35507
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
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Underfull \hbox (badness 2671) in paragraph at lines 36166--36169
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[522] [523] [524] [525] [526]
Underfull \hbox (badness 10000) in paragraph at lines 36570--36573
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[527] [528]
Underfull \hbox (badness 10000) in paragraph at lines 36691--36695
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[529]
Underfull \hbox (badness 10000) in paragraph at lines 36753--36757
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541]
[542] [543] [544] [545] [546]
Underfull \hbox (badness 1990) in paragraph at lines 37971--37979
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 37971--37979
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[547] [548] [549] [550] [551]
Underfull \hbox (badness 1515) in paragraph at lines 38243--38248
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[552] [553] [554]
Underfull \hbox (badness 1917) in paragraph at lines 38473--38480
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[555] [556] [557] [558] [559] [560] [561] [562]
Underfull \hbox (badness 3668) in paragraph at lines 39045--39047
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[563]
Underfull \hbox (badness 2401) in paragraph at lines 39150--39154
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[564] [565] [566]
Underfull \hbox (badness 2111) in paragraph at lines 39319--39324
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.
Underfull \hbox (badness 6542) in paragraph at lines 39335--39340
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[567] [568] [569] [570] [571] [572] [573]
Underfull \hbox (badness 10000) in paragraph at lines 39769--39774
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]
Underfull \hbox (badness 10000) in paragraph at lines 39769--39774
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[574]
Underfull \hbox (badness 5417) in paragraph at lines 39861--39865
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[575]
Underfull \hbox (badness 10000) in paragraph at lines 39922--39926
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[576]) (./compiler-pkg.tex
Chapter 2.
[577] [578] [579]) (./datasets-pkg.tex [580]
Chapter 3.
Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592]
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
[605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616]
[617] [618] [619] [620] [621] [622] [623]
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[624]
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[626]
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[627] [628]
Overfull \vbox (17.12102pt too high) has occurred while \output is active
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[640]
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[641]
Underfull \hbox (badness 6658) in paragraph at lines 3925--3927
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[642] [643] [644] [645] [646] [647] [648] [649] [650]
Underfull \vbox (badness 10000) has occurred while \output is active [651]
[652] [653] [654]) (./grDevices-pkg.tex
Chapter 4.
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[667] [668] [669] [670]
Underfull \hbox (badness 5175) in paragraph at lines 1058--1060
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[671] [672] [673]
Underfull \hbox (badness 1852) in paragraph at lines 1255--1258
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[674] [675] [676]
Underfull \hbox (badness 1490) in paragraph at lines 1461--1466
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[677]
Underfull \hbox (badness 2698) in paragraph at lines 1515--1518
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[678]
Underfull \hbox (badness 10000) in paragraph at lines 1584--1588
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[679] [680] [681] [682]
Underfull \hbox (badness 1325) in paragraph at lines 1867--1877
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[683] [684]
Underfull \hbox (badness 10000) in paragraph at lines 1972--1974
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[685] [686]
Underfull \hbox (badness 6758) in paragraph at lines 2133--2136
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[687] [688] [689] [690] [691] [692] [693] [694]
Underfull \hbox (badness 10000) in paragraph at lines 2650--2651
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[696] [697] [698] [699] [700]
Underfull \hbox (badness 1152) in paragraph at lines 3088--3090
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[701] [702] [703] [704] [705]
Underfull \hbox (badness 2856) in paragraph at lines 3409--3412
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
Underfull \hbox (badness 2662) in paragraph at lines 3423--3425
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[706] [707]
Underfull \hbox (badness 1173) in paragraph at lines 3539--3549
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[708] [709] [710] [711] [712] [713] [714] [715] [716] [717]
Underfull \hbox (badness 1067) in paragraph at lines 4246--4253
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[718] [719]
Underfull \hbox (badness 5231) in paragraph at lines 4407--4409
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[720]
Underfull \hbox (badness 1789) in paragraph at lines 4484--4486
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[721]
Underfull \hbox (badness 1377) in paragraph at lines 4534--4539
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
Underfull \hbox (badness 2671) in paragraph at lines 4561--4569
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as
[722]
Underfull \hbox (badness 1418) in paragraph at lines 4610--4617
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,
Underfull \hbox (badness 2443) in paragraph at lines 4618--4627
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and
Underfull \hbox (badness 2653) in paragraph at lines 4618--4627
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,
Underfull \hbox (badness 1755) in paragraph at lines 4628--4630
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[723] [724]
Underfull \hbox (badness 1057) in paragraph at lines 4739--4744
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
Underfull \hbox (badness 7344) in paragraph at lines 4799--4801
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[725] [726]
Underfull \hbox (badness 2035) in paragraph at lines 4923--4932
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
Underfull \hbox (badness 10000) in paragraph at lines 4923--4932
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,
Underfull \hbox (badness 10000) in paragraph at lines 4923--4932
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[727] [728]
Underfull \hbox (badness 10000) in paragraph at lines 4992--4999
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /
Underfull \hbox (badness 2189) in paragraph at lines 4992--4999
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[729] [730]
Underfull \hbox (badness 1546) in paragraph at lines 5130--5138
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[731]
Underfull \hbox (badness 1648) in paragraph at lines 5207--5211
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[732] [733] [734] [735] [736] [737]
Underfull \hbox (badness 10000) in paragraph at lines 5630--5633
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[738] [739] [740] [741] [742] [743]
Underfull \hbox (badness 1189) in paragraph at lines 6026--6028
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[744] [745]
Underfull \hbox (badness 10000) in paragraph at lines 6124--6126
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[746] [747] [748] [749]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[752] [753] [754]) (./graphics-pkg.tex
Chapter 5.
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.
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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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[][] 
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
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                   \relax 
l.8638 \HeaderA{units}{Graphical Units}{units}
                                               [886] [887] [888] [889])
(./grid-pkg.tex [890]
Chapter 6.
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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[959] [960] [961] [962]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[990] [991] [992] [993]) (./methods-pkg.tex [994]
Chapter 7.
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[1006] [1007] [1008] [1009] [1010] [1011] [1012]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment
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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,
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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and
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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1086] [1087] [1088]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099]
[1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1120] [1121] [1122] [1123]) (./parallel-pkg.tex [1124]
Chapter 8.
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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135]
[1136] [1137] [1138] [1139] [1140] [1141] [1142]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1143] [1144] [1145]) (./splines-pkg.tex [1146]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157]
[1158] [1159]) (./stats-pkg.tex [1160]
Chapter 10.
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[1172]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1181] [1182]
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1209]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1237] [1238] [1239] [1240]
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\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1241] [1242]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1243]
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[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1244] [1245] [1246] [1247] [1248] [1249] [1250]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1251] [1252] [1253] [1254]
Underfull \hbox (badness 7081) in paragraph at lines 6302--6305
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method
Underfull \hbox (badness 10000) in paragraph at lines 6306--6308
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1255] [1256] [1257] [1258] [1259]
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[1261] [1262] [1263] [1264] [1265] [1266]
Underfull \hbox (badness 10000) in paragraph at lines 7114--7117
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1267] [1268]
Underfull \hbox (badness 10000) in paragraph at lines 7251--7254
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279]
[1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290]
Underfull \hbox (badness 2626) in paragraph at lines 8726--8729
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1291] [1292]
Underfull \hbox (badness 2503) in paragraph at lines 8826--8830
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1293] [1294] [1295] [1296] [1297]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9160--9162
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]
Underfull \hbox (badness 1019) in paragraph at lines 9826--9829
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1308] [1309] [1310]
Underfull \hbox (badness 4518) in paragraph at lines 10087--10092
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1311] [1312] [1313] [1314] [1315]
Underfull \hbox (badness 2142) in paragraph at lines 10430--10433
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
Underfull \hbox (badness 1253) in paragraph at lines 10449--10452
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1316]
Underfull \hbox (badness 1708) in paragraph at lines 10511--10514
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 1694) in paragraph at lines 10890--10893
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1322]
Underfull \hbox (badness 1867) in paragraph at lines 10909--10918
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1323] [1324] [1325] [1326] [1327] [1328] [1329]pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.11356 \aliasA{hat}{influence.measures}{hat}
                                              [1330]
Underfull \hbox (badness 1484) in paragraph at lines 11478--11480
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339]
Underfull \hbox (badness 4441) in paragraph at lines 12036--12038
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to
Underfull \hbox (badness 10000) in paragraph at lines 12043--12045
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1340] [1341] [1342] [1343] [1344]
Underfull \hbox (badness 2894) in paragraph at lines 12377--12381
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 4518) in paragraph at lines 13072--13077
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 4518) in paragraph at lines 13719--13724
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383]
Underfull \hbox (badness 2503) in paragraph at lines 14919--14923
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1384] [1385] [1386] [1387] [1388] [1389] [1390]
Underfull \hbox (badness 1418) in paragraph at lines 15428--15434
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401]
[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415]
Underfull \hbox (badness 2359) in paragraph at lines 17051--17053
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1416]
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[1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429]
Underfull \hbox (badness 1377) in paragraph at lines 17962--17967
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
Underfull \hbox (badness 1735) in paragraph at lines 17967--17970
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1184) in paragraph at lines 17980--17984
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1430]
Underfull \hbox (badness 2662) in paragraph at lines 17988--17992
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1431] [1432]
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[1434] [1435] [1436] [1437] [1438] [1439]
Underfull \hbox (badness 1337) in paragraph at lines 18604--18607
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450]
[1451]
Underfull \hbox (badness 5563) in paragraph at lines 19330--19332
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for
Underfull \hbox (badness 1194) in paragraph at lines 19333--19336
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1452] [1453] [1454] [1455] [1456] [1457]
Underfull \hbox (badness 2503) in paragraph at lines 19699--19702
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 19726--19728
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468]
[1469] [1470] [1471] [1472] [1473]
Underfull \hbox (badness 10000) in paragraph at lines 20712--20718
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484]
[1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1337) in paragraph at lines 22027--22033
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1506]
Underfull \hbox (badness 10000) in paragraph at lines 22820--22823
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514]
Underfull \hbox (badness 10000) in paragraph at lines 23395--23398
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1515]
Underfull \hbox (badness 3690) in paragraph at lines 23446--23450
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1516] [1517] [1518] [1519]
Underfull \hbox (badness 7667) in paragraph at lines 23712--23714
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1520] [1521] [1522]
Underfull \hbox (badness 3439) in paragraph at lines 23915--23921
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530]
Underfull \hbox (badness 10000) in paragraph at lines 24463--24468
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
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[1542] [1543] [1544]
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Underfull \hbox (badness 3514) in paragraph at lines 25479--25484
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1546]
Underfull \hbox (badness 3514) in paragraph at lines 25541--25546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1547]
Underfull \hbox (badness 3514) in paragraph at lines 25598--25603
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1548]
Underfull \hbox (badness 3514) in paragraph at lines 25659--25665
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1549] [1550] [1551] [1552]
Underfull \hbox (badness 3514) in paragraph at lines 25872--25877
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1553]
Underfull \hbox (badness 3514) in paragraph at lines 25928--25933
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Underfull \hbox (badness 3514) in paragraph at lines 25985--25990
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1554]
Underfull \hbox (badness 3514) in paragraph at lines 26040--26045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1555]
Underfull \hbox (badness 6691) in paragraph at lines 26109--26114
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563]
Underfull \hbox (badness 10000) in paragraph at lines 26633--26636
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-
Underfull \hbox (badness 10000) in paragraph at lines 26633--26636
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 5431) in paragraph at lines 27239--27241
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1574] [1575] [1576]
Underfull \hbox (badness 5431) in paragraph at lines 27449--27452
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1577] [1578] [1579] [1580] [1581]
Underfull \hbox (badness 1337) in paragraph at lines 27761--27765
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 27878--27881
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1584] [1585] [1586]
Underfull \hbox (badness 1616) in paragraph at lines 28061--28064
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597]
[1598] [1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 10000) in paragraph at lines 29188--29192
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1604] [1605] [1606] [1607] [1608] [1609]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1618]
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[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1619] [1620] [1621] [1622] [1623]
Underfull \hbox (badness 10000) in paragraph at lines 30492--30497
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1624] [1625] [1626]) (./stats4-pkg.tex
Chapter 11.
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h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1633] [1634] [1635])
(./tcltk-pkg.tex [1636]
Chapter 12.
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Underfull \hbox (badness 1546) in paragraph at lines 649--656
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655]
Underfull \hbox (badness 3375) in paragraph at lines 1390--1393
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1656]) (./tools-pkg.tex
Chapter 13.
[1657]
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[1658]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1659] [1660]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,
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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject
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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The
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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject
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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1716] [1717] [1718] [1719]) (./utils-pkg.tex [1720]
Chapter 14.
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-
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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
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[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-
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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1748]
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
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[1751]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-
[1752]
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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
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\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1767]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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l.3985 ...mat Unordered and Ordered Lists}{format}
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ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
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l.3985 ...mat Unordered and Ordered Lists}{format}
                                                   [1779] [1780] [1781]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1793] [1794]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
[1800]
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[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
[1801]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed
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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1802]
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by
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[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1840] [1841]
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emacs
 / manual /
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via
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[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[]\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/
10 ar-gu-ment's spec-i-fi-ca-tion should be fol-
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\T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut"
, "wrap")\T1/ptm/m/n/10 . De-
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\T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po
-nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 
options[][][]\T1/ptm/m/n/10 )
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\T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back 
com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses
[1879] [1880] [1881]
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[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
[1882] [1883] [1884] [1885] [1886] [1887]
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /
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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[1888] [1889] [1890] [1891] [1892] [1893] [1894]
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[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[1895]
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined see
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[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
ailable = NULL \T1/ptm/m/n/10 make a call to
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[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[1896] [1897] [1898] [1899] [1900]
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[]\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For
 ex-am-ple,
[1901]
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion
[1902] [1903] [1904]) [1905] [1906] (./KernSmooth-pkg.tex
Chapter 15.
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916])
(./MASS-pkg.tex
Chapter 16.
[1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927]
[1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938]
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[]\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo
r
[1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949]
[1950] [1951] [1952] [1953]
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[]\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an
d graph-i-cal pa-ram-e-ters. Note that
[1954] [1955] [1956]
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[]\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m
/sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \
T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "f"\T1/ptm/m/n/10 
,
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\T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/
10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T
1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1
/ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1
/ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are
[1957] [1958]
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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[]\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1
/ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m
/sl/10 cycles \T1/ptm/m/n/10 terms or when a
[1959] [1960] [1961]
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[]\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/
10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with
[1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972]
[1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[1984]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[1985] [1986] [1987] [1988] [1989] [1990]
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[]\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in
 the case of
[1991] [1992] [1993] [1994] [1995] [1996] [1997] [1998] [1999] [2000] [2001]pdf
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<to be read again> 
                   \relax 
l.6130 ...sical N, P, K Factorial Experiment}{npk}
                                                  pdfTeX warning (ext4): destin
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<to be read again> 
                   \relax 
l.6130 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2002]
Underfull \hbox (badness 1931) in paragraph at lines 6248--6252
[]\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t
rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space
. That is
[2003] [2004] [2005] [2006]
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[2008] [2009] [2010] [2011] [2012] [2013] [2014]
Underfull \hbox (badness 10000) in paragraph at lines 7097--7104
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[2015]
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[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2016] [2017] [2018]
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\T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n
ant com-po-nents are used (ex-cept for
[2019] [2020] [2021] [2022] [2023] [2024] [2025] [2026] [2027]
Underfull \hbox (badness 4686) in paragraph at lines 7980--7982
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
Underfull \hbox (badness 2591) in paragraph at lines 7996--8000
[]\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1
/ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m
/sl/10 cycles \T1/ptm/m/n/10 terms or when a
[2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038]
[2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046]
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[]\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e
x-pected fre-quen-cies in the re-sult. Us-ing
[2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057]
[2058] [2059] [2060] [2061] [2062] [2063]) (./Matrix-pkg.tex [2064]
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 42--45
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
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\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2065]
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[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2066] [2067] [2068] [2069]
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[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
[2070] [2071]
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[]\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f
rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z
i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a
[2072] [2073]
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[]\T1/ptm/m/n/10 In some ver-sions of \T1/phv/m/n/10 R\T1/ptm/m/n/10 , [][]\T1/
zi4/m/sl/10 eigen[][][](CAex) \T1/ptm/m/n/10 fell into an in-fi-nite loop (wher
eas
[2074] [2075]
Underfull \hbox (badness 1635) in paragraph at lines 950--952
[]\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/
n/10 (or equiv-a-lently,
[2076] [2077]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.chol}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1062 ...- 'Matrix' S4 Generic and Methods}{chol}
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                   \relax 
l.1062 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                   [2078pdfTeX warning (ext4): 
destination with the same identifier (name{Rfn.chol,dsCMatrix.Rdash.method}) ha
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\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works viapdfTeX warning (
ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth
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                                                  \fi \fi 
l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works viapdfTeX warning (
ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth
od}) has been already used, duplicate ignored
\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works via] [2079]
[2080]
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[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
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[]\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion 
[][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra
[2081] [2082]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("Cholesky",    ...) \T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and
 \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 "
dgeMatrix"\T1/ptm/m/n/10 , by class
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[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
[2083]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
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                   \relax 
l.1551 ... Row and Column Sums and Means}{colSums}
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                   \relax 
l.1551 ... Row and Column Sums and Means}{colSums}
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                   \relax 
l.1552 \aliasA{colMeans}{colSums}{colMeans}
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                   \relax 
l.1584 \aliasA{rowSums}{colSums}{rowSums}
                                          [2084] [2085] [2086]
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[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2087] [2088] [2089] [2090] [2091]
Underfull \hbox (badness 2142) in paragraph at lines 2179--2183
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("dgCMatrix",    ...)\T1/ptm/m/n/10 , more
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\T1/ptm/m/n/10 typ-i-cally via \T1/zi4/m/sl/10 as(*, "CsparseMatrix") \T1/ptm/m
/n/10 or sim-i-lar. Of-ten how-ever, more eas-ily via
[2092] [2093] [2094] [2095]
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[]\T1/ptm/m/n/10 Note that both \T1/zi4/m/sl/10 new(.) \T1/ptm/m/n/10 and [][]\
T1/zi4/m/sl/10 spMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10
 "dgTMatrix" \T1/ptm/m/n/10 (and other
[2096]
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[]\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T
1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[]
[][] \T1/ptm/m/n/10 (with ``su-per-class''
[2097] [2098]
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[]\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi
v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
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[]\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro
up meth-ods re-turn a
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[][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr
efer-able to (and more ef-fi-cient than)
[2101] [2102] [2103]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("dsCMatrix",    ...) \T1/ptm/m/n/10 or
[2104] [2105] [2106] [2107] [2108] [2109]
Underfull \hbox (badness 2318) in paragraph at lines 3812--3816
[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C
lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi
4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 ,
[2110] [2111] [2112] [2113] [2114]
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[]\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite 
Tay-lor se-ries
[2115] [2116] [2117]
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 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/
Boeing/msc00726.tar.gz"))))[] 
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 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe
ll-Boeing/counterx/jgl009.mtx.gz"))))[] 
[2118] [2119]
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[]\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/
ptm/m/n/10 codes should be aligned, see
[2120] [2121] [2122] [2123] [2124]
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[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use
[2125]
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[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within
 the
[2126]
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[]\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o
ther sig-na-tures (use
[2127] [2128]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con-
tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault,
[2129] [2130] [2131]
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[]\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10
 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10
 is a tri-an-gu-lar ma-trix. Anal-o-gously,
[2132] [2133] [2134] [2135]
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[]\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2136]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde
nseMatrix"\T1/ptm/m/n/10 . Class
[2137]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2138]
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[]\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2139]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2140]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2141]
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[]\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth
-ods for dif-fer-ent types of ma-tri-ces. Use
[2142] [2143] [2144]
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[]\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math-
e-mat-i-cally''),
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[]\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1
/ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1
0 . How-ever,
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                                       [2146]
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[]\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1
/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing
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                   \relax 
l.6779 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
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l.6871 ...A{crossprod}{matrix-products}{crossprod}
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l.6956 ...tcrossprod}{matrix-products}{tcrossprod}
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\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.7076 \end{Arguments}
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l.7076 \end{Arguments}
                      ]
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[]\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o
ther sig-na-tures (use
[2149]
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[]\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio
n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1
/zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][]
\T1/ptm/m/n/10 , and
[2150]
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[]\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2151]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1
/ptm/m/n/10 should be done, af-ter
[2152] [2153]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde
nseMatrix"\T1/ptm/m/n/10 . Class
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
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l.7750 \HeaderA{norm}{Matrix Norms}{norm}
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l.7750 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2158] [2159]
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[]\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2160]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2161]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2162]
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[]\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth
er sig-na-tures (use
[2163]
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[]\T1/zi4/m/sl/10 signature(from = "pMatrix", to = "matrix")\T1/ptm/m/n/10 : co
-er-cion to a tra-di-tional
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                   \relax 
l.8514 \aliasA{qr}{qr-methods}{qr}
                                  
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[]\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma-
trix with
[2167]
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of
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                   \relax 
l.8749 ... the Reciprocal Condition Number}{rcond}
                                                   [2170] [2171] [2172]
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l.9318 \aliasA{solve}{solve-methods}{solve}
                                            [2178]
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[]\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list
[2179]
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[]\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T
1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing 
\T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and
[2180]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu
la and data frame
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[]\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co
-er-ca-ble to)
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
[2181] [2182] [2183] [2184] [2185] [2186]
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                   \relax 
l.10293 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
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l.10572 ...toeplitz}{sparseVector-class}{toeplitz}
                                                   [2192]
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[]\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/
m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list
[2193]
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[][][]\T1/zi4/m/sl/10 Matrix[][][](*, sparse=TRUE) \T1/ptm/m/n/10 for the more 
usual con-struc-tor of such ma-tri-ces; sim-i-larly,
[2195] [2196]
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[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2197] [2198]
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[]\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1
/zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar
e de-fined
[2199] [2200] [2201] [2202] [2203] [2204]
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[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2205]) (./boot-pkg.tex [2206]
Chapter 18.
[2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216]
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[]\T1/ptm/m/n/10 For most of the \T1/zi4/m/sl/10 boot \T1/ptm/m/n/10 meth-ods t
he re-sam-pling is done in the mas-ter pro-cess, but not if
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\T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d
e-fault clus-ter, a sec-ond ap-proach is used if
[2217]
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[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2218]
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[2220]
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[]\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i
n-ter-
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\T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues
[2221]
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[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2222] [2223] [2224] [2225]
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[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2226] [2227] [2228] [2229] [2230] [2231]
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[]\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 "
ordinary" \T1/ptm/m/n/10 (case re-sam-pling),
[2232] [2233]
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[2235]
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[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2236] [2237] [2238]
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[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2239]
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[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2240] [2241]
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[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s
l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t
he sam-ple
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\T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl
/10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n
/10 is used. This is mul-ti-plied by
[2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252]
[2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263]
[2264] [2265]
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[]\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault 
is
[2266] [2267] [2268]
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[]\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with 
fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by
[2269] [2270] [2271] [2272] [2273] [2274] [2275] [2276]
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[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2277] [2278] [2279] [2280]
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[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
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\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
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[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa
ddle.distn"\T1/ptm/m/n/10 . See the help file for
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[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310])
(./class-pkg.tex
Chapter 19.
[2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318]
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[]\T1/ptm/m/n/10 the size of the code-book. De-faults to
[2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326]) (./cluster-pkg.tex
Chapter 20.
[2327] [2328] [2329] [2330] [2331]
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[2333] [2334] [2335] [2336]
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[]\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem
-ory (and hence time), but dis-ables
[2337] [2338] [2339]
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[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2340]
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[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
[2341] [2342] [2343]
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[]\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/
m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne
nt, e.g., for
[2344] [2345] [2346]
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[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or
 \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of
[2349] [2350] [2351] [2352] [2353] [2354] [2355] [2356]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the con-verged. This is de-fined as
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[][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the 
[][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell
ipsoid \T1/ptm/m/n/10 ob-jects.
[2357] [2358] [2359] [2360]
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[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
[2361] [2362] [2363] [2364] [2365] [2366]
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[]\T1/ptm/m/n/10 The de-fault \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 (or in-te-ge
r \T1/zi4/m/sl/10 0\T1/ptm/m/n/10 ) cor-re-sponds to the orig-i-nal ``swap'' al
-go-rithm, whereas
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[][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc
es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl
ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 ,
[2367] [2368] [2369] [2370] [2371]
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[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2372] [2373]
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[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2374] [2375] [2376] [2377]
Underfull \hbox (badness 2582) in paragraph at lines 3451--3456
[][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi
4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p
tm/m/n/10 ,
[2378]
Underfull \hbox (badness 10000) in paragraph at lines 3513--3518
[]\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi
4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4378) in paragraph at lines 3513--3518
\T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T
1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider
[2379] [2380] [2381] [2382]
Underfull \hbox (badness 10000) in paragraph at lines 3805--3807
[]\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T
1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for
[2383] [2384] [2385] [2386]
Underfull \hbox (badness 4108) in paragraph at lines 4029--4034
[]\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/
n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col
[2387]
Underfull \hbox (badness 1062) in paragraph at lines 4084--4086
[]\T1/ptm/m/n/10 numeric (rank 1) ar-ray of clus-ter-wise \T1/ptm/m/it/10 means
 \T1/ptm/m/n/10 of sil-hou-ette widths where
Underfull \hbox (badness 1383) in paragraph at lines 4106--4111
[]\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m
/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T
1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial)
[2388] [2389] [2390] [2391] [2392] [2393] [2394] [2395] [2396])
(./codetools-pkg.tex
Chapter 21.
[2397] [2398] [2399] [2400] [2401]) (./foreign-pkg.tex [2402]
Chapter 22.
[2403] [2404] [2405] [2406] [2407] [2408] [2409] [2410] [2411] [2412] [2413]
Underfull \hbox (badness 10000) in paragraph at lines 734--735
[2414] [2415] [2416] [2417] [2418] [2419] [2420]
Underfull \hbox (badness 10000) in paragraph at lines 1188--1194
[]\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign
:::writeForeignStata\T1/ptm/m/n/10 ,
[2421] [2422]) (./lattice-pkg.tex
Chapter 23.
[2423] [2424] [2425] [2426] [2427] [2428]
Underfull \hbox (badness 10000) in paragraph at lines 480--485
[]\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales 
\T1/ptm/m/n/10 in this case may be
Underfull \hbox (badness 1237) in paragraph at lines 480--485
\T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh
ich would usu-ally
[2429] [2430] [2431] [2432] [2433] [2434] [2435] [2436] [2437] [2438]
Underfull \hbox (badness 1062) in paragraph at lines 1399--1403
\T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta
-tion for
[2439] [2440] [2441]
Underfull \hbox (badness 1803) in paragraph at lines 1567--1584
[][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack-
age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 1567--1584
[][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p
anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/sl/10 strip.default[][][]\T1/ptm/m/n/10 ,
[2442] [2443]
Underfull \hbox (badness 3009) in paragraph at lines 1726--1728
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][
][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1756--1760
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2444] [2445] [2446] [2447] [2448]
Underfull \hbox (badness 10000) in paragraph at lines 2142--2145
[]\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, 
the value of
[2449] [2450] [2451] [2452]
Underfull \hbox (badness 7064) in paragraph at lines 2365--2369
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z
i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form
[2453] [2454]
Underfull \hbox (badness 7064) in paragraph at lines 2550--2557
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z
i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form
[2455] [2456] [2457]
Underfull \hbox (badness 3291) in paragraph at lines 2764--2769
[]\T1/ptm/m/n/10 for the \T1/zi4/m/sl/10 formula \T1/ptm/m/n/10 method, a for-m
ula of the form \T1/zi4/m/sl/10 z ~ x * y
[2458]
Underfull \hbox (badness 2781) in paragraph at lines 2851--2853
[]\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col.
regions \T1/ptm/m/n/10 ar-gu-ment in
[2459]
Underfull \hbox (badness 2486) in paragraph at lines 2962--2966
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2460] [2461] [2462]
Underfull \hbox (badness 10000) in paragraph at lines 3113--3121
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f
or-mula of the form \T1/zi4/m/sl/10 z ~ x
[2463] [2464] [2465] [2466]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.parallel}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3434 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2467] [2468] [2469] [2470]
[2471] [2472] [2473]
Underfull \hbox (badness 5696) in paragraph at lines 3925--3929
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings
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\T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme =
 "col.whitebg")\T1/ptm/m/n/10 .
Underfull \hbox (badness 2435) in paragraph at lines 3925--3929
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2474] [2475]
Underfull \hbox (badness 1173) in paragraph at lines 4064--4068
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
Underfull \hbox (badness 3219) in paragraph at lines 4091--4093
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
[2476] [2477] [2478]
Underfull \hbox (badness 3492) in paragraph at lines 4287--4297
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 
is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4312--4315
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo
t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4315--4317
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p
lot.polygon \T1/ptm/m/n/10 and
[2479] [2480] [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488]
Underfull \hbox (badness 6157) in paragraph at lines 5038--5041
[]\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles
 via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and
[2489] [2490] [2491] [2492] [2493] [2494]
Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 5592) in paragraph at lines 5489--5492
\T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le
ft of pan-els us-ing
[2495] [2496] [2497] [2498] [2499]
Underfull \hbox (badness 4805) in paragraph at lines 5849--5853
[]\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should 
be high-
Underfull \hbox (badness 10000) in paragraph at lines 5860--5867
[]\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t
ra pa-ram-e-ters are passed on to
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\T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi
fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as
Underfull \hbox (badness 2418) in paragraph at lines 5860--5867
\T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z
i4/m/sl/10 trellis.focus
Underfull \hbox (badness 10000) in paragraph at lines 5860--5867
\T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar
e used (in com-bi-na-tion with
Underfull \hbox (badness 1259) in paragraph at lines 5860--5867
[][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th
e cho-sen view-port if so re-quested.
[2500] [2501] [2502] [2503]
Underfull \hbox (badness 4242) in paragraph at lines 6160--6165
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
Underfull \hbox (badness 2529) in paragraph at lines 6160--6165
\T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there
 is no group-ing vari-able, oth-er-wise
[2504] [2505]
Underfull \hbox (badness 2310) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/
10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round
 if
[2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] [2516]
[2517] [2518] [2519] [2520]
Underfull \hbox (badness 2012) in paragraph at lines 7328--7331
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2521] [2522]
Underfull \hbox (badness 3333) in paragraph at lines 7500--7502
[]\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol
 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing
[2523] [2524] [2525] [2526] [2527] [2528]
Underfull \hbox (badness 1436) in paragraph at lines 7910--7916
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
Underfull \hbox (badness 1661) in paragraph at lines 7910--7916
\T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e
nce.line'' pa-ram-e-ter set-
Underfull \hbox (badness 1231) in paragraph at lines 7910--7916
\T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti
ngs. The
[2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536]
Underfull \hbox (badness 10000) in paragraph at lines 8468--8471
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp
ose \T1/ptm/m/n/10 from
Underfull \hbox (badness 1092) in paragraph at lines 8514--8516
[]\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 <Deepayan.Sarkar@R-project.org
> \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally
 con-
[2537] [2538] [2539]
Underfull \hbox (badness 3895) in paragraph at lines 8675--8678
[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T
1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2540]
Underfull \hbox (badness 1515) in paragraph at lines 8751--8755
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2541]
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[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
[2542]
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[]\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c
omponents.default \T1/ptm/m/n/10 and
[2543] [2544] [2545] [2546]
Overfull \hbox (29.94879pt too wide) in paragraph at lines 9162--9166
[]\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4
/m/sl/10 left,    right, left.name, right.name, condition
Overfull \hbox (20.63074pt too wide) in paragraph at lines 9162--9166
\T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left,    right.x, right.y, left.nam
e, right.x.name, right.y.name, condition
[2547] [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556]pdfTeX war
ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been
 already used, duplicate ignored
<to be read again> 
                   \relax 
l.9851 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                [2557] [2558] [2559] [2560])
(./mgcv-pkg.tex
Chapter 24.
Underfull \hbox (badness 1052) in paragraph at lines 40--42
[]\T1/ptm/m/n/10 selects ex-act test statis-tic to use for sin-gle smooth term 
p-values. See
[2561] [2562] [2563]
Underfull \hbox (badness 1142) in paragraph at lines 172--176
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2564]
Underfull \hbox (badness 2626) in paragraph at lines 252--255
[]\T1/ptm/m/n/10 If all smooths are P-splines and all ten-sor prod-ucts are of 
the form
[2565] [2566]
Underfull \hbox (badness 10000) in paragraph at lines 349--356
[][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m
gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/
n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 smooth.terms[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 7168) in paragraph at lines 349--356
[][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m
/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][]
[]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z
i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][]
\T1/ptm/m/n/10 ,
[2567] [2568] [2569]
Underfull \hbox (badness 1158) in paragraph at lines 573--575
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2570] [2571]
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[2584] [2585] [2586] [2587] [2588] [2589]
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2590]
Underfull \hbox (badness 1043) in paragraph at lines 1820--1825
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2591] [2592] [2593] [2594] [2595]
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[2609]
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[]\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/
n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see
[2610] [2611]
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[2613] [2614] [2615] [2616] [2617] [2618] [2619] [2620] [2621] [2622]
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2623] [2624]
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[]\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since
 it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with
[2625] [2626]
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[2628] [2629]
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[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638]
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2639] [2640] [2641] [2642] [2643] [2644] [2645]
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[2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657]
Underfull \hbox (badness 1242) in paragraph at lines 6018--6019
[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[2658] [2659] [2660] [2661] [2662] [2663] [2664] [2665]
Underfull \hbox (badness 6001) in paragraph at lines 6461--6463
[]\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 <simon.wood@r-project.org> \T1/p
tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's
[2666] [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674]
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[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim.
pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 7154--7157
\T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId
not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 ,
[2676]
Underfull \hbox (badness 10000) in paragraph at lines 7210--7213
[]\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z
i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T
1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 ,
[2677] [2678] [2679] [2680] [2681] [2682] [2683] [2684] [2685]
Overfull \hbox (21.78088pt too wide) in paragraph at lines 7785--7785
 []        \T1/zi4/m/sl/10 block.size=50000,newdata.guaranteed=FALSE,na.action=
na.pass,cluster=NULL,...)[] 
[2686]
Underfull \hbox (badness 1852) in paragraph at lines 7854--7857
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and
[2687] [2688] [2689]
Underfull \hbox (badness 1852) in paragraph at lines 8006--8009
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and
[2690] [2691]
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Underfull \hbox (badness 1205) in paragraph at lines 8214--8216
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 8214--8216
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 8220--8225
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2693] [2694]
Underfull \hbox (badness 1205) in paragraph at lines 8304--8306
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 8304--8306
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[2695] [2696] [2697]
Underfull \hbox (badness 1253) in paragraph at lines 8503--8505
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[2698] [2699] [2700]
Underfull \hbox (badness 4792) in paragraph at lines 8689--8692
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/
10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m
/n/10 can be used:
Underfull \hbox (badness 10000) in paragraph at lines 8689--8692
\T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo
th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[2701]
Underfull \hbox (badness 10000) in paragraph at lines 8768--8771
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1
0 "deviance"\T1/ptm/m/n/10 ,
[2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710]
Underfull \hbox (badness 1975) in paragraph at lines 9288--9293
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2711]
Underfull \hbox (badness 1762) in paragraph at lines 9377--9389
\T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T
1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr
es-sion splines with
[2712] [2713] [2714] [2715]
Underfull \hbox (badness 7667) in paragraph at lines 9587--9593
[][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one
 or two vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 9628--9629
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2716] [2717]
Underfull \hbox (badness 10000) in paragraph at lines 9757--9759
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2718] [2719]
Underfull \hbox (badness 10000) in paragraph at lines 9885--9886
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2720] [2721] [2722]
Underfull \hbox (badness 1436) in paragraph at lines 10023--10028
\T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i
) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one
[2723] [2724] [2725] [2726] [2727] [2728] [2729]
Underfull \hbox (badness 10000) in paragraph at lines 10470--10476
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
[2730] [2731] [2732]
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Underfull \vbox (badness 10000) has occurred while \output is active [2734]
Overfull \hbox (7.9809pt too wide) in paragraph at lines 10768--10768
 []\T1/zi4/m/n/9 b <- gam(z~s(x,y,k=c(30,15),bs="so",xt=list(bnd=bnd,nmax=nmax)
),knots=knots,method="REML")[] 
[2735]
Underfull \hbox (badness 10000) in paragraph at lines 10814--10815
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2736] [2737] [2738] [2739]
Underfull \hbox (badness 3895) in paragraph at lines 11074--11079
[][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any
 num-ber of vari-ables, spec-i-fied via terms like
[2740]
Underfull \hbox (badness 10000) in paragraph at lines 11119--11121
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2741] [2742] [2743]
Underfull \hbox (badness 1371) in paragraph at lines 11300--11306
[]\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive
 smooths are avail-able (see
[2744]
Underfull \hbox (badness 10000) in paragraph at lines 11340--11344
[][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/
zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre
ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 11340--11344
\T1/ptm/m/n/10 code[][]soap[][][], code[][]Spherical.Spline[][][], [][]\T1/zi4/
m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.defined.
smooth[][][]\T1/ptm/m/n/10 ,
[2745]
Underfull \hbox (badness 2326) in paragraph at lines 11413--11420
[]\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied
 us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and
[2746] [2747]
Underfull \hbox (badness 2158) in paragraph at lines 11498--11498
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[2748] [2749] [2750] [2751] [2752] [2753] [2754] [2755] [2756] [2757] [2758]
[2759] [2760] [2761] [2762] [2763] [2764] [2765] [2766] [2767] [2768] [2769]
Underfull \hbox (badness 1796) in paragraph at lines 12851--12854
[]\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/
sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar
[2770] [2771] [2772] [2773] [2774]) (./nlme-pkg.tex
Chapter 25.
[2775] [2776] [2777] [2778] [2779] [2780] [2781] [2782] [2783] [2784] [2785]
[2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796]
[2797] [2798] [2799] [2800] [2801] [2802] [2803] [2804]
Underfull \hbox (badness 2875) in paragraph at lines 1998--2004
[]\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat-
ing a co-vari-ate
Underfull \hbox (badness 1466) in paragraph at lines 1998--2004
\T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1
0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 ,
[2805] [2806] [2807] [2808]
Underfull \hbox (badness 10000) in paragraph at lines 2259--2265
[][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi
alize.corStruct[][][]\T1/ptm/m/n/10 ,
[2809] [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819]
[2820] [2821] [2822] [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830]
[2831] [2832] [2833] [2834] [2835] [2836] [2837] [2838] [2839] [2840] [2841]
Underfull \hbox (badness 1067) in paragraph at lines 4413--4418
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[2842] [2843] [2844] [2845] [2846] [2847] [2848] [2849] [2850] [2851] [2852]
[2853]
Underfull \hbox (badness 10000) in paragraph at lines 5159--5163
[][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/
m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo
variate.varFunc[][][]\T1/ptm/m/n/10 ,
[2854] [2855] [2856] [2857] [2858] [2859] [2860]
Underfull \hbox (badness 10000) in paragraph at lines 5591--5594
[][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 
,
[2861] [2862] [2863] [2864] [2865] [2866] [2867]
Underfull \hbox (badness 10000) in paragraph at lines 5972--5977
[][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou
psFormula.lme[][][]\T1/ptm/m/n/10 ,
[2868] [2869] [2870] [2871]
Underfull \hbox (badness 1490) in paragraph at lines 6242--6253
[][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC
ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.
gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 ,
[2872]
Underfull \hbox (badness 10000) in paragraph at lines 6306--6308
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[2873] [2874] [2875] [2876] [2877] [2878]
Underfull \hbox (badness 10000) in paragraph at lines 6717--6719
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[2879] [2880] [2881] [2882]
Underfull \hbox (badness 10000) in paragraph at lines 6987--6994
[][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n
/10 ,
[2883] [2884] [2885] [2886]
Underfull \hbox (badness 10000) in paragraph at lines 7249--7254
[][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize
.glsStruct[][][]\T1/ptm/m/n/10 ,
[2887] [2888] [2889] [2890] [2891] [2892] [2893] [2894] [2895] [2896] [2897]
[2898]
Underfull \hbox (badness 1642) in paragraph at lines 8031--8053
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
[2899] [2900]
Underfull \hbox (badness 1642) in paragraph at lines 8203--8225
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
[2901] [2902] [2903] [2904] [2905]
Underfull \hbox (badness 10000) in paragraph at lines 8510--8512
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[2906] [2907] [2908] [2909]
Underfull \hbox (badness 10000) in paragraph at lines 8773--8780
[][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi
st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/
10 ,
[2910] [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918]
Underfull \hbox (badness 10000) in paragraph at lines 9298--9305
[][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik
.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm
/m/n/10 ,
[2919] [2920] [2921] [2922] [2923]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9660 ...rA{Matrix}{Assign Matrix Values}{Matrix}
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ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.9660 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [2924] [2925] [2926]
[2927] [2928] [2929] [2930] [2931] [2932] [2933] [2934] [2935]
Underfull \hbox (badness 1596) in paragraph at lines 10436--10462
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[2936] [2937]
Underfull \hbox (badness 1490) in paragraph at lines 10574--10580
[][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm
e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm
eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10
 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 ,
[2938] [2939] [2940] [2941]
Underfull \hbox (badness 10000) in paragraph at lines 10809--10811
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952]
[2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] [2962] [2963]
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Underfull \hbox (badness 1286) in paragraph at lines 13664--13671
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl
/10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or
[2984] [2985] [2986] [2987] [2988] [2989] [2990] [2991]
Underfull \hbox (badness 1215) in paragraph at lines 14192--14194
[]\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis.
 De-faults to
[2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002]
[3003] [3004]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.random.effects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15073 ...Extract Random Effects}{random.effects}
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ation with the same identifier (name{Rfn.random.effects.1}) has been already us
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<to be read again> 
                   \relax 
l.15073 ...Extract Random Effects}{random.effects}
                                                   [3005] [3006] [3007]
[3008] [3009] [3010] [3011] [3012] [3013] [3014] [3015]
Underfull \hbox (badness 1067) in paragraph at lines 15784--15789
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
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the "raw" resid-u-als (ob-served - fit-ted),
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[]\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form
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\T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+
...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for
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[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
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1/zi4/m/sl/10 pdMat
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0 "Blocked" \T1/ptm/m/n/10 for
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\T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \
T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D
iagonal"
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10 , and
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stant plus power of covariate" \T1/ptm/m/n/10 for
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[][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1
0 ,
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[][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl
/10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa
ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10
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[][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari
ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/
m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 ,
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Chapter 26.
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Chapter 27.
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Chapter 28.
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Chapter 29.
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l.1029 ...erapy for Stage B/C colon cancer}{colon}
                                                  
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[]\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response
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fbeta"\T1/ptm/m/n/10 ,
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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv
e/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
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[2] (./base-pkg.tex
Chapter 1.
Underfull \hbox (badness 4595) in paragraph at lines 40--43
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[3] [4]
Underfull \hbox (badness 1960) in paragraph at lines 137--145
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is
Underfull \hbox (badness 1668) in paragraph at lines 148--155
[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[5] [6]
Underfull \hbox (badness 1178) in paragraph at lines 291--295
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[7] [8]
Underfull \hbox (badness 3977) in paragraph at lines 375--378
[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[9] [10]
Underfull \hbox (badness 2556) in paragraph at lines 505--511
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1094--1097
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21]
Underfull \hbox (badness 4072) in paragraph at lines 1302--1308
[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1809--1809
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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Underfull \hbox (badness 10000) in paragraph at lines 1994--1996
[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[47] [48] [49] [50] [51] [52]
Underfull \hbox (badness 10000) in paragraph at lines 3452--3454
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[68] [69]
Underfull \hbox (badness 2521) in paragraph at lines 4608--4610
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[85] [86]
Underfull \hbox (badness 2096) in paragraph at lines 5827--5840
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[87] [88] [89] [90]
Underfull \hbox (badness 10000) in paragraph at lines 6149--6152
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[91] [92]
Underfull \hbox (badness 2635) in paragraph at lines 6313--6319
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move
Underfull \hbox (badness 2173) in paragraph at lines 6313--6319
\T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and 
web-pages gen-er-ated by
Underfull \hbox (badness 4441) in paragraph at lines 6313--6319
\T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o
m-mended) when writ-ing it
Underfull \hbox (badness 1895) in paragraph at lines 6313--6319
\T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha
r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or
[93]
Underfull \hbox (badness 3568) in paragraph at lines 6374--6381
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[94] [95]
Underfull \vbox (badness 10000) has occurred while \output is active [96]
[97] [98] [99] [100] [101] [102]
Underfull \hbox (badness 4595) in paragraph at lines 6979--6982
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[103]
Underfull \hbox (badness 2351) in paragraph at lines 7037--7040
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[104] [105] [106] [107]
Underfull \hbox (badness 10000) in paragraph at lines 7287--7298
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[108]
Underfull \hbox (badness 4479) in paragraph at lines 7359--7368
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
Underfull \hbox (badness 2469) in paragraph at lines 7359--7368
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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Underfull \hbox (badness 1394) in paragraph at lines 8923--8928
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[130] [131] [132] [133] [134]
Underfull \hbox (badness 1052) in paragraph at lines 9260--9265
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check
Underfull \hbox (badness 1231) in paragraph at lines 9260--9265
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[135] [136]
Underfull \hbox (badness 10000) in paragraph at lines 9398--9402
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 2150) in paragraph at lines 9789--9792
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
Underfull \hbox (badness 6396) in paragraph at lines 9803--9811
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
Underfull \hbox (badness 2409) in paragraph at lines 9844--9851
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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[155] [156] [157]
Underfull \hbox (badness 4569) in paragraph at lines 10887--10891
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment
Underfull \hbox (badness 2401) in paragraph at lines 10887--10891
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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Underfull \hbox (badness 2698) in paragraph at lines 11431--11440
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed
Underfull \hbox (badness 4341) in paragraph at lines 11431--11440
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[177]
Underfull \hbox (badness 2253) in paragraph at lines 12383--12385
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[178] [179]
Underfull \hbox (badness 1565) in paragraph at lines 12444--12448
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
Underfull \hbox (badness 10000) in paragraph at lines 12487--12489
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[180] [181]
Underfull \hbox (badness 1466) in paragraph at lines 12625--12628
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[182] [183]
Underfull \hbox (badness 10000) in paragraph at lines 12733--12737
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 12744--12747
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[184] [185] [186]
Underfull \hbox (badness 3965) in paragraph at lines 12991--12995
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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Underfull \hbox (badness 4429) in paragraph at lines 13708--13711
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[198]
Underfull \hbox (badness 10000) in paragraph at lines 13794--13796
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so
Underfull \hbox (badness 10000) in paragraph at lines 13800--13804
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[199]
Underfull \hbox (badness 2790) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
[200] [201] [202] [203] [204] [205] [206] [207]
Underfull \hbox (badness 2452) in paragraph at lines 14410--14414
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 14410--14414
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[208] [209]
Underfull \hbox (badness 1092) in paragraph at lines 14561--14566
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[210] [211] [212] [213]
Underfull \hbox (badness 6741) in paragraph at lines 14809--14813
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[214] [215] [216] [217]
Underfull \hbox (badness 1867) in paragraph at lines 15115--15122
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[218] [219] [220] [221]
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[223]
Underfull \hbox (badness 3679) in paragraph at lines 15486--15488
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 1478) in paragraph at lines 15966--15969
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[230] [231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 16214--16216
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[233] [234] [235] [236] [237] [238] [239] [240]
Underfull \hbox (badness 1442) in paragraph at lines 16748--16750
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[241]
Underfull \hbox (badness 2452) in paragraph at lines 16840--16856
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[242] [243] [244] [245] [246] [247]
Underfull \hbox (badness 1248) in paragraph at lines 17247--17250
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[248] [249] [250] [251]
Underfull \hbox (badness 4739) in paragraph at lines 17500--17502
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[264] [265]
Underfull \hbox (badness 10000) in paragraph at lines 18408--18412
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory
Underfull \hbox (badness 2460) in paragraph at lines 18408--18412
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[266]
Underfull \hbox (badness 1509) in paragraph at lines 18543--18550
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages
Underfull \hbox (badness 1354) in paragraph at lines 18543--18550
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and
[267]
Underfull \hbox (badness 1014) in paragraph at lines 18559--18564
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[268] [269] [270] [271] [272] [273] [274] [275] [276] [277]
Underfull \hbox (badness 1264) in paragraph at lines 19273--19278
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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Underfull \hbox (badness 10000) in paragraph at lines 20021--20023
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
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[300] [301] [302] [303]
Underfull \hbox (badness 1655) in paragraph at lines 21009--21015
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[304] [305]
Underfull \hbox (badness 1484) in paragraph at lines 21170--21178
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[306] [307] [308] [309]
Underfull \hbox (badness 2790) in paragraph at lines 21441--21444
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 21441--21444
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[310] [311] [312] [313]
Underfull \hbox (badness 1194) in paragraph at lines 21720--21723
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[314] [315] [316]
Underfull \hbox (badness 10000) in paragraph at lines 21921--21924
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:
Underfull \hbox (badness 10000) in paragraph at lines 21921--21924
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
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[329] [330] [331]
Underfull \hbox (badness 1199) in paragraph at lines 22973--22979
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"
Underfull \hbox (badness 2027) in paragraph at lines 22973--22979
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 1038) in paragraph at lines 23512--23521
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially
Underfull \hbox (badness 1881) in paragraph at lines 23522--23525
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 23541--23543
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[340]
Underfull \hbox (badness 10000) in paragraph at lines 23607--23617
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to
Underfull \hbox (badness 2142) in paragraph at lines 23618--23624
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 23631--23636
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 23641--23643
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[341] [342]
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by
[343]
Underfull \hbox (badness 10000) in paragraph at lines 23893--23896
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
Underfull \hbox (badness 2689) in paragraph at lines 23917--23919
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
Underfull \hbox (badness 7203) in paragraph at lines 23950--23953
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and
Underfull \hbox (badness 2735) in paragraph at lines 23960--23971
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),
Underfull \hbox (badness 10000) in paragraph at lines 23960--23971
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.
Underfull \hbox (badness 10000) in paragraph at lines 23973--23980
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to
Underfull \hbox (badness 10000) in paragraph at lines 23973--23980
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a
Underfull \hbox (badness 6380) in paragraph at lines 23973--23980
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like
Underfull \hbox (badness 1082) in paragraph at lines 23973--23980
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[344] [345] [346] [347] [348]
Underfull \hbox (badness 10000) in paragraph at lines 24286--24290
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion
Underfull \hbox (badness 10000) in paragraph at lines 24286--24290
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[349] [350] [351] [352]
Underfull \hbox (badness 1735) in paragraph at lines 24604--24608
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[353] [354] [355] [356] [357] [358] [359] [360] [361]
Underfull \hbox (badness 2726) in paragraph at lines 25128--25131
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373]
Underfull \hbox (badness 1052) in paragraph at lines 25947--25952
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[374] [375] [376] [377] [378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 1533) in paragraph at lines 26675--26678
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395]
[396] [397] [398] [399] [400] [401] [402] [403] [404] [405] [406] [407]
Underfull \hbox (badness 10000) in paragraph at lines 28330--28334
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 28330--28334
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
Underfull \hbox (badness 6188) in paragraph at lines 28352--28354
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 1655) in paragraph at lines 28897--28899
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[416] [417] [418] [419] [420] [421] [422] [423] [424] [425]
Underfull \hbox (badness 10000) in paragraph at lines 29565--29569
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[426] [427] [428]
Underfull \hbox (badness 2302) in paragraph at lines 29798--29805
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,
Underfull \hbox (badness 2837) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing
Underfull \hbox (badness 2980) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,
Underfull \hbox (badness 2181) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[429] [430]
Underfull \hbox (badness 2261) in paragraph at lines 29952--29957
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[431]
Underfull \hbox (badness 10000) in paragraph at lines 29979--29985
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[432]
Underfull \hbox (badness 10000) in paragraph at lines 30055--30060
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444]
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456]
[457] [458] [459] [460]
Underfull \vbox (badness 10000) has occurred while \output is active [461]
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471]
Underfull \hbox (badness 1072) in paragraph at lines 32829--32833
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 32834--32838
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
Underfull \hbox (badness 10000) in paragraph at lines 32862--32868
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 32862--32868
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 32862--32868
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
[472]
Underfull \hbox (badness 3343) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[473] [474] [475] [476]
Underfull \hbox (badness 10000) in paragraph at lines 33171--33177
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is
Underfull \hbox (badness 1152) in paragraph at lines 33171--33177
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488]
[489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500]
[501] [502]
Underfull \hbox (badness 3333) in paragraph at lines 34897--34902
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[503] [504] [505] [506] [507] [508] [509] [510] [511]
Underfull \hbox (badness 1472) in paragraph at lines 35504--35507
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[512] [513] [514] [515] [516] [517] [518] [519] [520] [521]
Underfull \hbox (badness 2671) in paragraph at lines 36166--36169
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[522] [523] [524] [525] [526]
Underfull \hbox (badness 10000) in paragraph at lines 36570--36573
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[527] [528]
Underfull \hbox (badness 10000) in paragraph at lines 36691--36695
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[529]
Underfull \hbox (badness 10000) in paragraph at lines 36753--36757
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541]
[542] [543] [544] [545] [546]
Underfull \hbox (badness 1990) in paragraph at lines 37971--37979
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 37971--37979
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[547] [548] [549] [550] [551]
Underfull \hbox (badness 1515) in paragraph at lines 38243--38248
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[552] [553] [554]
Underfull \hbox (badness 1917) in paragraph at lines 38473--38480
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[555] [556] [557] [558] [559] [560] [561] [562]
Underfull \hbox (badness 3668) in paragraph at lines 39045--39047
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[563]
Underfull \hbox (badness 2401) in paragraph at lines 39150--39154
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[564] [565] [566]
Underfull \hbox (badness 2111) in paragraph at lines 39319--39324
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.
Underfull \hbox (badness 6542) in paragraph at lines 39335--39340
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[567] [568] [569] [570] [571] [572] [573]
Underfull \hbox (badness 10000) in paragraph at lines 39769--39774
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]
Underfull \hbox (badness 10000) in paragraph at lines 39769--39774
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[574]
Underfull \hbox (badness 5417) in paragraph at lines 39861--39865
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[575]
Underfull \hbox (badness 10000) in paragraph at lines 39922--39926
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[576]) (./compiler-pkg.tex
Chapter 2.
[577] [578] [579]) (./datasets-pkg.tex [580]
Chapter 3.
Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592]
[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
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[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[642] [643] [644] [645] [646] [647] [648] [649] [650]
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[652] [653] [654]) (./grDevices-pkg.tex
Chapter 4.
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[667] [668] [669] [670]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
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\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[677]
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[678]
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[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
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\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
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[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
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[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[720]
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as
[722]
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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,
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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and
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\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,
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\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[727] [728]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /
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\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[729] [730]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
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[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[738] [739] [740] [741] [742] [743]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[752] [753] [754]) (./graphics-pkg.tex
Chapter 5.
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.
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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[885]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8638 \HeaderA{units}{Graphical Units}{units}
                                               [886] [887] [888] [889])
(./grid-pkg.tex [890]
Chapter 6.
[891] [892] [893] [894] [895] [896]
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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[954] [955] [956] [957] [958]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[959] [960] [961] [962]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[975] [976] [977] [978] [979] [980] [981]
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[990] [991] [992] [993]) (./methods-pkg.tex [994]
Chapter 7.
[995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005]
[1006] [1007] [1008] [1009] [1010] [1011] [1012]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class
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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1029] [1030]
Underfull \hbox (badness 1132) in paragraph at lines 2768--2772
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1031] [1032] [1033] [1034] [1035] [1036] [1037]
Underfull \hbox (badness 1102) in paragraph at lines 3308--3310
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1038] [1039] [1040] [1041]
Underfull \hbox (badness 10000) in paragraph at lines 3637--3642
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
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[]\T1/ptm/m/n/10 The
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[1053] [1054]
Underfull \hbox (badness 1436) in paragraph at lines 4550--4553
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment
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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1055] [1056] [1057] [1058] [1059] [1060] [1061]
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[1063]
Underfull \hbox (badness 1092) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,
Underfull \hbox (badness 1117) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and
Underfull \hbox (badness 4036) in paragraph at lines 5299--5302
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1064] [1065] [1066] [1067] [1068]
Underfull \hbox (badness 1087) in paragraph at lines 5619--5624
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1069] [1070] [1071]
Underfull \hbox (badness 2221) in paragraph at lines 5845--5850
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
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[1081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}
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<to be read again> 
                   \relax 
l.6707 \aliasA{S4}{S3Part}{S4}
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                   \relax 
l.6983 \aliasA{Complex}{S4groupGeneric}{Complex}
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                   \relax 
l.6985 \aliasA{Logic}{S4groupGeneric}{Logic}
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                   \relax 
l.6986 \aliasA{Math}{S4groupGeneric}{Math}
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l.6988 \aliasA{Ops}{S4groupGeneric}{Ops}
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                   \relax 
l.6989 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1086] [1087] [1088]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099]
[1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
[1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119]
Underfull \hbox (badness 1852) in paragraph at lines 9641--9645
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1120] [1121] [1122] [1123]) (./parallel-pkg.tex [1124]
Chapter 8.
Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135]
[1136] [1137] [1138] [1139] [1140] [1141] [1142]
Underfull \hbox (badness 3386) in paragraph at lines 1246--1249
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1143] [1144] [1145]) (./splines-pkg.tex [1146]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157]
[1158] [1159]) (./stats-pkg.tex [1160]
Chapter 10.
[1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171]
[1172]
Underfull \hbox (badness 1412) in paragraph at lines 843--845
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180]
Underfull \hbox (badness 2503) in paragraph at lines 1324--1327
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1181] [1182]
Underfull \hbox (badness 10000) in paragraph at lines 1503--1507
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192]
Underfull \hbox (badness 3965) in paragraph at lines 2163--2165
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1193] [1194] [1195] [1196] [1197]
Underfull \hbox (badness 3965) in paragraph at lines 2495--2497
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208]
[1209]
Underfull \hbox (badness 2503) in paragraph at lines 3308--3311
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220]
[1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1237] [1238] [1239] [1240]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1241] [1242]
Underfull \hbox (badness 2503) in paragraph at lines 5524--5528
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1243]
Underfull \hbox (badness 1168) in paragraph at lines 5585--5590
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1244] [1245] [1246] [1247] [1248] [1249] [1250]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1251] [1252] [1253] [1254]
Underfull \hbox (badness 7081) in paragraph at lines 6302--6305
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method
Underfull \hbox (badness 10000) in paragraph at lines 6306--6308
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1255] [1256] [1257] [1258] [1259]
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[1261] [1262] [1263] [1264] [1265] [1266]
Underfull \hbox (badness 10000) in paragraph at lines 7114--7117
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1267] [1268]
Underfull \hbox (badness 10000) in paragraph at lines 7251--7254
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279]
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Underfull \hbox (badness 2626) in paragraph at lines 8726--8729
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1291] [1292]
Underfull \hbox (badness 2503) in paragraph at lines 8826--8830
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1293] [1294] [1295] [1296] [1297]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9160--9162
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]
Underfull \hbox (badness 1019) in paragraph at lines 9826--9829
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1308] [1309] [1310]
Underfull \hbox (badness 4518) in paragraph at lines 10087--10092
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1311] [1312] [1313] [1314] [1315]
Underfull \hbox (badness 2142) in paragraph at lines 10430--10433
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
Underfull \hbox (badness 1253) in paragraph at lines 10449--10452
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1316]
Underfull \hbox (badness 1708) in paragraph at lines 10511--10514
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 1694) in paragraph at lines 10890--10893
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1322]
Underfull \hbox (badness 1867) in paragraph at lines 10909--10918
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1323] [1324] [1325] [1326] [1327] [1328] [1329]pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i
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<to be read again> 
                   \relax 
l.11356 \aliasA{hat}{influence.measures}{hat}
                                              [1330]
Underfull \hbox (badness 1484) in paragraph at lines 11478--11480
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339]
Underfull \hbox (badness 4441) in paragraph at lines 12036--12038
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to
Underfull \hbox (badness 10000) in paragraph at lines 12043--12045
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1340] [1341] [1342] [1343] [1344]
Underfull \hbox (badness 2894) in paragraph at lines 12377--12381
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 4518) in paragraph at lines 13072--13077
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364]
Underfull \hbox (badness 4518) in paragraph at lines 13719--13724
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375]
[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383]
Underfull \hbox (badness 2503) in paragraph at lines 14919--14923
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1384] [1385] [1386] [1387] [1388] [1389] [1390]
Underfull \hbox (badness 1418) in paragraph at lines 15428--15434
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
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[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415]
Underfull \hbox (badness 2359) in paragraph at lines 17051--17053
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1416]
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[1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429]
Underfull \hbox (badness 1377) in paragraph at lines 17962--17967
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
Underfull \hbox (badness 1735) in paragraph at lines 17967--17970
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1184) in paragraph at lines 17980--17984
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1430]
Underfull \hbox (badness 2662) in paragraph at lines 17988--17992
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1431] [1432]
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[1434] [1435] [1436] [1437] [1438] [1439]
Underfull \hbox (badness 1337) in paragraph at lines 18604--18607
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450]
[1451]
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[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for
Underfull \hbox (badness 1194) in paragraph at lines 19333--19336
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1452] [1453] [1454] [1455] [1456] [1457]
Underfull \hbox (badness 2503) in paragraph at lines 19699--19702
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 19726--19728
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
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[1469] [1470] [1471] [1472] [1473]
Underfull \hbox (badness 10000) in paragraph at lines 20712--20718
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484]
[1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1337) in paragraph at lines 22027--22033
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1506]
Underfull \hbox (badness 10000) in paragraph at lines 22820--22823
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514]
Underfull \hbox (badness 10000) in paragraph at lines 23395--23398
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1515]
Underfull \hbox (badness 3690) in paragraph at lines 23446--23450
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1516] [1517] [1518] [1519]
Underfull \hbox (badness 7667) in paragraph at lines 23712--23714
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1520] [1521] [1522]
Underfull \hbox (badness 3439) in paragraph at lines 23915--23921
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530]
Underfull \hbox (badness 10000) in paragraph at lines 24463--24468
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
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[1542] [1543] [1544]
Underfull \vbox (badness 10000) has occurred while \output is active [1545]
Underfull \hbox (badness 3514) in paragraph at lines 25479--25484
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1546]
Underfull \hbox (badness 3514) in paragraph at lines 25541--25546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1547]
Underfull \hbox (badness 3514) in paragraph at lines 25598--25603
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1548]
Underfull \hbox (badness 3514) in paragraph at lines 25659--25665
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1549] [1550] [1551] [1552]
Underfull \hbox (badness 3514) in paragraph at lines 25872--25877
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1553]
Underfull \hbox (badness 3514) in paragraph at lines 25928--25933
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Underfull \hbox (badness 3514) in paragraph at lines 25985--25990
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1554]
Underfull \hbox (badness 3514) in paragraph at lines 26040--26045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1555]
Underfull \hbox (badness 6691) in paragraph at lines 26109--26114
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563]
Underfull \hbox (badness 10000) in paragraph at lines 26633--26636
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-
Underfull \hbox (badness 10000) in paragraph at lines 26633--26636
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 5431) in paragraph at lines 27239--27241
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1574] [1575] [1576]
Underfull \hbox (badness 5431) in paragraph at lines 27449--27452
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1577] [1578] [1579] [1580] [1581]
Underfull \hbox (badness 1337) in paragraph at lines 27761--27765
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 27878--27881
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1584] [1585] [1586]
Underfull \hbox (badness 1616) in paragraph at lines 28061--28064
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[1598] [1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 10000) in paragraph at lines 29188--29192
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1604] [1605] [1606] [1607] [1608] [1609]
Underfull \hbox (badness 1337) in paragraph at lines 29551--29555
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617]
Underfull \hbox (badness 1337) in paragraph at lines 30035--30039
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1618]
Underfull \hbox (badness 5161) in paragraph at lines 30128--30130
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1619] [1620] [1621] [1622] [1623]
Underfull \hbox (badness 10000) in paragraph at lines 30492--30497
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1624] [1625] [1626]) (./stats4-pkg.tex
Chapter 11.
[1627] [1628] [1629] [1630] [1631] [1632]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1633] [1634] [1635])
(./tcltk-pkg.tex [1636]
Chapter 12.
[1637] [1638] [1639] [1640] [1641] [1642] [1643]
Underfull \vbox (badness 10000) has occurred while \output is active [1644]
Underfull \hbox (badness 1546) in paragraph at lines 649--656
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655]
Underfull \hbox (badness 3375) in paragraph at lines 1390--1393
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1656]) (./tools-pkg.tex
Chapter 13.
[1657]
LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.
[1658]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1659] [1660]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1661]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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Underfull \hbox (badness 1635) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1673]
Underfull \hbox (badness 4441) in paragraph at lines 1119--1127
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
Underfull \hbox (badness 1014) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
[1674]
Underfull \hbox (badness 10000) in paragraph at lines 1168--1171
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
Overfull \hbox (15.52087pt too wide) in paragraph at lines 1168--1171
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1675] [1676]
Underfull \hbox (badness 10000) in paragraph at lines 1296--1298
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1677] [1678]
Underfull \hbox (badness 7981) in paragraph at lines 1466--1470
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
Underfull \hbox (badness 1082) in paragraph at lines 1472--1474
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1679] [1680] [1681] [1682]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1668 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1683]
Underfull \hbox (badness 5726) in paragraph at lines 1794--1799
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject
Underfull \hbox (badness 7221) in paragraph at lines 1794--1799
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1684] [1685] [1686] [1687] [1688] [1689] [1690]
Underfull \hbox (badness 7981) in paragraph at lines 2185--2191
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1691] [1692] [1693] [1694]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2444.
[1695] [1696] [1697]
Underfull \hbox (badness 1424) in paragraph at lines 2681--2683
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707]
Underfull \hbox (badness 10000) in paragraph at lines 3371--3373
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1708] [1709] [1710] [1711] [1712]
Underfull \hbox (badness 1838) in paragraph at lines 3708--3714
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The
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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1713]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject
Underfull \hbox (badness 7221) in paragraph at lines 3788--3793
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1714] [1715]
Underfull \hbox (badness 1688) in paragraph at lines 3930--3942
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1716] [1717] [1718] [1719]) (./utils-pkg.tex [1720]
Chapter 14.
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1721] [1722] [1723]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-
Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3343) in paragraph at lines 543--549
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1729] [1730]
Underfull \hbox (badness 5847) in paragraph at lines 656--662
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-
Underfull \hbox (badness 4229) in paragraph at lines 656--662
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
Underfull \hbox (badness 3861) in paragraph at lines 724--729
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1740] [1741] [1742] [1743] [1744] [1745]
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1746] [1747]
Underfull \hbox (badness 10000) in paragraph at lines 1855--1857
[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1748]
Underfull \hbox (badness 5189) in paragraph at lines 1945--1947
[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1749]
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[1751]
Underfull \hbox (badness 1661) in paragraph at lines 2160--2167
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-
[1752]
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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
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\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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                                                   [1779] [1780] [1781]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
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[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed
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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by
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[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emacs
 / manual /
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via
Underfull \hbox (badness 2635) in paragraph at lines 10557--10560
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[]\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/
10 ar-gu-ment's spec-i-fi-ca-tion should be fol-
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\T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut"
, "wrap")\T1/ptm/m/n/10 . De-
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\T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po
-nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 
options[][][]\T1/ptm/m/n/10 )
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\T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back 
com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses
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[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /
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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined see
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[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
ailable = NULL \T1/ptm/m/n/10 make a call to
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[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For
 ex-am-ple,
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion
[1902] [1903] [1904]) [1905] [1906] (./KernSmooth-pkg.tex
Chapter 15.
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916])
(./MASS-pkg.tex
Chapter 16.
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Underfull \hbox (badness 7256) in paragraph at lines 1603--1605
[]\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo
r
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Underfull \hbox (badness 7944) in paragraph at lines 2693--2696
[]\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an
d graph-i-cal pa-ram-e-ters. Note that
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Underfull \hbox (badness 2384) in paragraph at lines 2863--2868
[]\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m
/sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \
T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "f"\T1/ptm/m/n/10 
,
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\T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/
10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T
1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1
/ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1
/ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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[]\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1
/ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m
/sl/10 cycles \T1/ptm/m/n/10 terms or when a
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[]\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/
10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with
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Underfull \hbox (badness 10000) in paragraph at lines 4810--4813
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[1984]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[1985] [1986] [1987] [1988] [1989] [1990]
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[]\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in
 the case of
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l.6130 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2002]
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[]\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t
rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space
. That is
[2003] [2004] [2005] [2006]
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[2008] [2009] [2010] [2011] [2012] [2013] [2014]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[2015]
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[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2016] [2017] [2018]
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\T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n
ant com-po-nents are used (ex-cept for
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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[]\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1
/ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m
/sl/10 cycles \T1/ptm/m/n/10 terms or when a
[2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038]
[2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046]
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[]\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e
x-pected fre-quen-cies in the re-sult. Us-ing
[2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057]
[2058] [2059] [2060] [2061] [2062] [2063]) (./Matrix-pkg.tex [2064]
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 42--45
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
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\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2065]
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[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2066] [2067] [2068] [2069]
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[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
[2070] [2071]
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[]\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f
rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z
i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a
[2072] [2073]
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[]\T1/ptm/m/n/10 In some ver-sions of \T1/phv/m/n/10 R\T1/ptm/m/n/10 , [][]\T1/
zi4/m/sl/10 eigen[][][](CAex) \T1/ptm/m/n/10 fell into an in-fi-nite loop (wher
eas
[2074] [2075]
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[]\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/
n/10 (or equiv-a-lently,
[2076] [2077]pdfTeX warning (ext4): destination with the same identifier (name{
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                   \relax 
l.1062 ...- 'Matrix' S4 Generic and Methods}{chol}
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l.1062 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                   [2078pdfTeX warning (ext4): 
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l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works viapdfTeX warning (
ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth
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l.1137 \item[chol]
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ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth
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l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works via] [2079]
[2080]
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[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
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[]\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion 
[][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra
[2081] [2082]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("Cholesky",    ...) \T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and
 \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 "
dgeMatrix"\T1/ptm/m/n/10 , by class
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[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
[2083]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
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                   \relax 
l.1551 ... Row and Column Sums and Means}{colSums}
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                   \relax 
l.1551 ... Row and Column Sums and Means}{colSums}
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                   \relax 
l.1552 \aliasA{colMeans}{colSums}{colMeans}
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l.1573 \aliasA{rowMeans}{colSums}{rowMeans}
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l.1584 \aliasA{rowSums}{colSums}{rowSums}
                                          [2084] [2085] [2086]
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[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2087] [2088] [2089] [2090] [2091]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("dgCMatrix",    ...)\T1/ptm/m/n/10 , more
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\T1/ptm/m/n/10 typ-i-cally via \T1/zi4/m/sl/10 as(*, "CsparseMatrix") \T1/ptm/m
/n/10 or sim-i-lar. Of-ten how-ever, more eas-ily via
[2092] [2093] [2094] [2095]
Underfull \hbox (badness 10000) in paragraph at lines 2488--2492
[]\T1/ptm/m/n/10 Note that both \T1/zi4/m/sl/10 new(.) \T1/ptm/m/n/10 and [][]\
T1/zi4/m/sl/10 spMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10
 "dgTMatrix" \T1/ptm/m/n/10 (and other
[2096]
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[]\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T
1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[]
[][] \T1/ptm/m/n/10 (with ``su-per-class''
[2097] [2098]
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[]\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi
v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
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[]\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro
up meth-ods re-turn a
[2099] [2100]
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[][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr
efer-able to (and more ef-fi-cient than)
[2101] [2102] [2103]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("dsCMatrix",    ...) \T1/ptm/m/n/10 or
[2104] [2105] [2106] [2107] [2108] [2109]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C
lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi
4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 ,
[2110] [2111] [2112] [2113] [2114]
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[]\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite 
Tay-lor se-ries
[2115] [2116] [2117]
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 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/
Boeing/msc00726.tar.gz"))))[] 
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 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe
ll-Boeing/counterx/jgl009.mtx.gz"))))[] 
[2118] [2119]
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[]\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/
ptm/m/n/10 codes should be aligned, see
[2120] [2121] [2122] [2123] [2124]
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[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use
[2125]
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[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within
 the
[2126]
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[]\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o
ther sig-na-tures (use
[2127] [2128]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con-
tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault,
[2129] [2130] [2131]
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[]\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10
 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10
 is a tri-an-gu-lar ma-trix. Anal-o-gously,
[2132] [2133] [2134] [2135]
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[]\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2136]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde
nseMatrix"\T1/ptm/m/n/10 . Class
[2137]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2138]
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[]\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2139]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2140]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2141]
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[]\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth
-ods for dif-fer-ent types of ma-tri-ces. Use
[2142] [2143] [2144]
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[]\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math-
e-mat-i-cally''),
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[]\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1
/ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1
0 . How-ever,
[2145]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det
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l.6613 \aliasA{det}{Matrix-class}{det}
                                       [2146]
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[]\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1
/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing
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[2147]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
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l.6779 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
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l.6871 ...A{crossprod}{matrix-products}{crossprod}
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l.6956 ...tcrossprod}{matrix-products}{tcrossprod}
                                                   [2148pdfTeX warning (ext4): 
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\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.7076 \end{Arguments}
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\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
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l.7076 \end{Arguments}
                      ]
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[]\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o
ther sig-na-tures (use
[2149]
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[]\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio
n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1
/zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][]
\T1/ptm/m/n/10 , and
[2150]
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[]\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2151]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1
/ptm/m/n/10 should be done, af-ter
[2152] [2153]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde
nseMatrix"\T1/ptm/m/n/10 . Class
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2155] [2156] [2157]pdfTeX warning (ext4): destination with the same identifier
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l.7750 \HeaderA{norm}{Matrix Norms}{norm}
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l.7750 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2158] [2159]
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[]\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2160]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2161]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2162]
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[]\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth
er sig-na-tures (use
[2163]
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[]\T1/zi4/m/sl/10 signature(from = "pMatrix", to = "matrix")\T1/ptm/m/n/10 : co
-er-cion to a tra-di-tional
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l.8514 \aliasA{qr}{qr-methods}{qr}
                                  
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[]\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma-
trix with
[2167]
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of
[2168] [2169]pdfTeX warning (ext4): destination with the same identifier (name{
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l.8749 ... the Reciprocal Condition Number}{rcond}
                                                   [2170] [2171] [2172]
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                                            [2178]
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[]\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list
[2179]
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[]\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T
1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and
[2180]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu
la and data frame
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[]\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co
-er-ca-ble to)
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
[2181] [2182] [2183] [2184] [2185] [2186]
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l.10293 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
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                   \relax 
l.10572 ...toeplitz}{sparseVector-class}{toeplitz}
                                                   [2192]
Underfull \hbox (badness 10000) in paragraph at lines 10657--10660
[]\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/
m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list
[2193]
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Underfull \hbox (badness 2653) in paragraph at lines 10788--10794
[][][]\T1/zi4/m/sl/10 Matrix[][][](*, sparse=TRUE) \T1/ptm/m/n/10 for the more 
usual con-struc-tor of such ma-tri-ces; sim-i-larly,
[2195] [2196]
Underfull \hbox (badness 2057) in paragraph at lines 10944--10946
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2197] [2198]
Underfull \hbox (badness 1831) in paragraph at lines 11119--11125
[]\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1
/zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar
e de-fined
[2199] [2200] [2201] [2202] [2203] [2204]
Underfull \hbox (badness 6910) in paragraph at lines 11567--11569
[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2205]) (./boot-pkg.tex [2206]
Chapter 18.
[2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216]
Underfull \hbox (badness 1097) in paragraph at lines 788--796
[]\T1/ptm/m/n/10 For most of the \T1/zi4/m/sl/10 boot \T1/ptm/m/n/10 meth-ods t
he re-sam-pling is done in the mas-ter pro-cess, but not if
Underfull \hbox (badness 4954) in paragraph at lines 797--807
\T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d
e-fault clus-ter, a sec-ond ap-proach is used if
[2217]
Underfull \hbox (badness 1881) in paragraph at lines 824--826
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2218]
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[2220]
Underfull \hbox (badness 10000) in paragraph at lines 1066--1070
[]\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i
n-ter-
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\T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues
[2221]
Underfull \hbox (badness 2150) in paragraph at lines 1103--1109
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2222] [2223] [2224] [2225]
Underfull \hbox (badness 1571) in paragraph at lines 1443--1445
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2226] [2227] [2228] [2229] [2230] [2231]
Underfull \hbox (badness 1005) in paragraph at lines 1797--1804
[]\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 "
ordinary" \T1/ptm/m/n/10 (case re-sam-pling),
[2232] [2233]
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[2235]
Underfull \hbox (badness 7379) in paragraph at lines 2081--2083
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2236] [2237] [2238]
Underfull \hbox (badness 1565) in paragraph at lines 2335--2340
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2239]
Underfull \hbox (badness 1881) in paragraph at lines 2429--2431
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2240] [2241]
Underfull \hbox (badness 2970) in paragraph at lines 2533--2537
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s
l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t
he sam-ple
Underfull \hbox (badness 2310) in paragraph at lines 2533--2537
\T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl
/10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n
/10 is used. This is mul-ti-plied by
[2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252]
[2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263]
[2264] [2265]
Underfull \hbox (badness 10000) in paragraph at lines 4187--4189
[]\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault 
is
[2266] [2267] [2268]
Underfull \hbox (badness 2393) in paragraph at lines 4386--4389
[]\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with 
fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by
[2269] [2270] [2271] [2272] [2273] [2274] [2275] [2276]
Underfull \hbox (badness 3000) in paragraph at lines 4956--4959
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2277] [2278] [2279] [2280]
Underfull \hbox (badness 2293) in paragraph at lines 5235--5238
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5235--5238
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] [2290] [2291]
Underfull \hbox (badness 4954) in paragraph at lines 6016--6019
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa
ddle.distn"\T1/ptm/m/n/10 . See the help file for
[2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300]
Underfull \hbox (badness 1596) in paragraph at lines 6737--6741
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310])
(./class-pkg.tex
Chapter 19.
[2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318]
Underfull \hbox (badness 10000) in paragraph at lines 608--610
[]\T1/ptm/m/n/10 the size of the code-book. De-faults to
[2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326]) (./cluster-pkg.tex
Chapter 20.
[2327] [2328] [2329] [2330] [2331]
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[2333] [2334] [2335] [2336]
Underfull \hbox (badness 4144) in paragraph at lines 682--685
[]\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem
-ory (and hence time), but dis-ables
[2337] [2338] [2339]
Underfull \hbox (badness 10000) in paragraph at lines 849--851
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2340]
Underfull \hbox (badness 10000) in paragraph at lines 936--938
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
[2341] [2342] [2343]
Underfull \hbox (badness 6110) in paragraph at lines 1114--1118
[]\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/
m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne
nt, e.g., for
[2344] [2345] [2346]
Underfull \hbox (badness 10000) in paragraph at lines 1380--1383
[2347] [2348]
Underfull \hbox (badness 2503) in paragraph at lines 1493--1496
[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or
 \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of
[2349] [2350] [2351] [2352] [2353] [2354] [2355] [2356]
Underfull \hbox (badness 10000) in paragraph at lines 2060--2062
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the con-verged. This is de-fined as
Underfull \hbox (badness 10000) in paragraph at lines 2071--2074
Underfull \hbox (badness 10000) in paragraph at lines 2085--2091
[][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the 
[][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell
ipsoid \T1/ptm/m/n/10 ob-jects.
[2357] [2358] [2359] [2360]
Underfull \hbox (badness 6675) in paragraph at lines 2320--2322
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
[2361] [2362] [2363] [2364] [2365] [2366]
Underfull \hbox (badness 1616) in paragraph at lines 2733--2738
[]\T1/ptm/m/n/10 The de-fault \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 (or in-te-ge
r \T1/zi4/m/sl/10 0\T1/ptm/m/n/10 ) cor-re-sponds to the orig-i-nal ``swap'' al
-go-rithm, whereas
Underfull \hbox (badness 2980) in paragraph at lines 2771--2775
[][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc
es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl
ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 ,
[2367] [2368] [2369] [2370] [2371]
Underfull \hbox (badness 1142) in paragraph at lines 3109--3112
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2372] [2373]
Underfull \hbox (badness 1142) in paragraph at lines 3228--3231
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2374] [2375] [2376] [2377]
Underfull \hbox (badness 2582) in paragraph at lines 3451--3456
[][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi
4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p
tm/m/n/10 ,
[2378]
Underfull \hbox (badness 10000) in paragraph at lines 3513--3518
[]\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi
4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4378) in paragraph at lines 3513--3518
\T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T
1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider
[2379] [2380] [2381] [2382]
Underfull \hbox (badness 10000) in paragraph at lines 3805--3807
[]\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T
1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for
[2383] [2384] [2385] [2386]
Underfull \hbox (badness 4108) in paragraph at lines 4029--4034
[]\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/
n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col
[2387]
Underfull \hbox (badness 1062) in paragraph at lines 4084--4086
[]\T1/ptm/m/n/10 numeric (rank 1) ar-ray of clus-ter-wise \T1/ptm/m/it/10 means
 \T1/ptm/m/n/10 of sil-hou-ette widths where
Underfull \hbox (badness 1383) in paragraph at lines 4106--4111
[]\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m
/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T
1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial)
[2388] [2389] [2390] [2391] [2392] [2393] [2394] [2395] [2396])
(./codetools-pkg.tex
Chapter 21.
[2397] [2398] [2399] [2400] [2401]) (./foreign-pkg.tex [2402]
Chapter 22.
[2403] [2404] [2405] [2406] [2407] [2408] [2409] [2410] [2411] [2412] [2413]
Underfull \hbox (badness 10000) in paragraph at lines 734--735
[2414] [2415] [2416] [2417] [2418] [2419] [2420]
Underfull \hbox (badness 10000) in paragraph at lines 1188--1194
[]\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign
:::writeForeignStata\T1/ptm/m/n/10 ,
[2421] [2422]) (./lattice-pkg.tex
Chapter 23.
[2423] [2424] [2425] [2426] [2427] [2428]
Underfull \hbox (badness 10000) in paragraph at lines 480--485
[]\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales 
\T1/ptm/m/n/10 in this case may be
Underfull \hbox (badness 1237) in paragraph at lines 480--485
\T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh
ich would usu-ally
[2429] [2430] [2431] [2432] [2433] [2434] [2435] [2436] [2437] [2438]
Underfull \hbox (badness 1062) in paragraph at lines 1399--1403
\T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta
-tion for
[2439] [2440] [2441]
Underfull \hbox (badness 1803) in paragraph at lines 1567--1584
[][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack-
age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 1567--1584
[][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p
anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/sl/10 strip.default[][][]\T1/ptm/m/n/10 ,
[2442] [2443]
Underfull \hbox (badness 3009) in paragraph at lines 1726--1728
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][
][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1756--1760
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2444] [2445] [2446] [2447] [2448]
Underfull \hbox (badness 10000) in paragraph at lines 2142--2145
[]\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, 
the value of
[2449] [2450] [2451] [2452]
Underfull \hbox (badness 7064) in paragraph at lines 2365--2369
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z
i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form
[2453] [2454]
Underfull \hbox (badness 7064) in paragraph at lines 2550--2557
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z
i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form
[2455] [2456] [2457]
Underfull \hbox (badness 3291) in paragraph at lines 2764--2769
[]\T1/ptm/m/n/10 for the \T1/zi4/m/sl/10 formula \T1/ptm/m/n/10 method, a for-m
ula of the form \T1/zi4/m/sl/10 z ~ x * y
[2458]
Underfull \hbox (badness 2781) in paragraph at lines 2851--2853
[]\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col.
regions \T1/ptm/m/n/10 ar-gu-ment in
[2459]
Underfull \hbox (badness 2486) in paragraph at lines 2962--2966
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2460] [2461] [2462]
Underfull \hbox (badness 10000) in paragraph at lines 3113--3121
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f
or-mula of the form \T1/zi4/m/sl/10 z ~ x
[2463] [2464] [2465] [2466]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.parallel}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3434 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2467] [2468] [2469] [2470]
[2471] [2472] [2473]
Underfull \hbox (badness 5696) in paragraph at lines 3925--3929
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings
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\T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme =
 "col.whitebg")\T1/ptm/m/n/10 .
Underfull \hbox (badness 2435) in paragraph at lines 3925--3929
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2474] [2475]
Underfull \hbox (badness 1173) in paragraph at lines 4064--4068
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
Underfull \hbox (badness 3219) in paragraph at lines 4091--4093
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
[2476] [2477] [2478]
Underfull \hbox (badness 3492) in paragraph at lines 4287--4297
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 
is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4312--4315
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo
t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4315--4317
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p
lot.polygon \T1/ptm/m/n/10 and
[2479] [2480] [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488]
Underfull \hbox (badness 6157) in paragraph at lines 5038--5041
[]\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles
 via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and
[2489] [2490] [2491] [2492] [2493] [2494]
Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 5592) in paragraph at lines 5489--5492
\T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le
ft of pan-els us-ing
[2495] [2496] [2497] [2498] [2499]
Underfull \hbox (badness 4805) in paragraph at lines 5849--5853
[]\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should 
be high-
Underfull \hbox (badness 10000) in paragraph at lines 5860--5867
[]\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t
ra pa-ram-e-ters are passed on to
Underfull \hbox (badness 1226) in paragraph at lines 5860--5867
\T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi
fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as
Underfull \hbox (badness 2418) in paragraph at lines 5860--5867
\T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z
i4/m/sl/10 trellis.focus
Underfull \hbox (badness 10000) in paragraph at lines 5860--5867
\T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar
e used (in com-bi-na-tion with
Underfull \hbox (badness 1259) in paragraph at lines 5860--5867
[][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th
e cho-sen view-port if so re-quested.
[2500] [2501] [2502] [2503]
Underfull \hbox (badness 4242) in paragraph at lines 6160--6165
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
Underfull \hbox (badness 2529) in paragraph at lines 6160--6165
\T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there
 is no group-ing vari-able, oth-er-wise
[2504] [2505]
Underfull \hbox (badness 2310) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/
10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round
 if
[2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] [2516]
[2517] [2518] [2519] [2520]
Underfull \hbox (badness 2012) in paragraph at lines 7328--7331
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2521] [2522]
Underfull \hbox (badness 3333) in paragraph at lines 7500--7502
[]\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol
 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing
[2523] [2524] [2525] [2526] [2527] [2528]
Underfull \hbox (badness 1436) in paragraph at lines 7910--7916
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
Underfull \hbox (badness 1661) in paragraph at lines 7910--7916
\T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e
nce.line'' pa-ram-e-ter set-
Underfull \hbox (badness 1231) in paragraph at lines 7910--7916
\T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti
ngs. The
[2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536]
Underfull \hbox (badness 10000) in paragraph at lines 8468--8471
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp
ose \T1/ptm/m/n/10 from
Underfull \hbox (badness 1092) in paragraph at lines 8514--8516
[]\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 <Deepayan.Sarkar@R-project.org
> \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally
 con-
[2537] [2538] [2539]
Underfull \hbox (badness 3895) in paragraph at lines 8675--8678
[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T
1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2540]
Underfull \hbox (badness 1515) in paragraph at lines 8751--8755
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2541]
Underfull \hbox (badness 6316) in paragraph at lines 8857--8862
[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
[2542]
Underfull \hbox (badness 5908) in paragraph at lines 8874--8877
[]\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c
omponents.default \T1/ptm/m/n/10 and
[2543] [2544] [2545] [2546]
Overfull \hbox (29.94879pt too wide) in paragraph at lines 9162--9166
[]\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4
/m/sl/10 left,    right, left.name, right.name, condition
Overfull \hbox (20.63074pt too wide) in paragraph at lines 9162--9166
\T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left,    right.x, right.y, left.nam
e, right.x.name, right.y.name, condition
[2547] [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556]pdfTeX war
ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been
 already used, duplicate ignored
<to be read again> 
                   \relax 
l.9851 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                [2557] [2558] [2559] [2560])
(./mgcv-pkg.tex
Chapter 24.
Underfull \hbox (badness 1052) in paragraph at lines 40--42
[]\T1/ptm/m/n/10 selects ex-act test statis-tic to use for sin-gle smooth term 
p-values. See
[2561] [2562] [2563]
Underfull \hbox (badness 1142) in paragraph at lines 172--176
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 197--202
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2564]
Underfull \hbox (badness 2626) in paragraph at lines 252--255
[]\T1/ptm/m/n/10 If all smooths are P-splines and all ten-sor prod-ucts are of 
the form
[2565] [2566]
Underfull \hbox (badness 10000) in paragraph at lines 349--356
[][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m
gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/
n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 smooth.terms[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 7168) in paragraph at lines 349--356
[][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m
/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][]
[]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z
i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][]
\T1/ptm/m/n/10 ,
[2567] [2568] [2569]
Underfull \hbox (badness 1158) in paragraph at lines 573--575
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2570] [2571]
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[2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] [2583]
[2584] [2585] [2586] [2587] [2588] [2589]
Underfull \hbox (badness 1142) in paragraph at lines 1794--1798
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2590]
Underfull \hbox (badness 1043) in paragraph at lines 1820--1825
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2591] [2592] [2593] [2594] [2595]
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Underfull \vbox (badness 10000) has occurred while \output is active [2597]
[2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608]
[2609]
Underfull \hbox (badness 10000) in paragraph at lines 3052--3056
[]\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/
n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see
[2610] [2611]
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[2613] [2614] [2615] [2616] [2617] [2618] [2619] [2620] [2621] [2622]
Underfull \hbox (badness 1142) in paragraph at lines 3869--3873
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2623] [2624]
Underfull \hbox (badness 1231) in paragraph at lines 3965--3967
[]\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since
 it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with
[2625] [2626]
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[2628] [2629]
Underfull \hbox (badness 2181) in paragraph at lines 4305--4306
[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638]
Underfull \hbox (badness 1142) in paragraph at lines 4911--4915
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2639] [2640] [2641] [2642] [2643] [2644] [2645]
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Underfull \vbox (badness 10000) has occurred while \output is active [2647]
[2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657]
Underfull \hbox (badness 1242) in paragraph at lines 6018--6019
[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[2658] [2659] [2660] [2661] [2662] [2663] [2664] [2665]
Underfull \hbox (badness 6001) in paragraph at lines 6461--6463
[]\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 <simon.wood@r-project.org> \T1/p
tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's
[2666] [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674]
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Underfull \hbox (badness 1038) in paragraph at lines 7154--7157
[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim.
pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 7154--7157
\T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId
not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 ,
[2676]
Underfull \hbox (badness 10000) in paragraph at lines 7210--7213
[]\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z
i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T
1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 ,
[2677] [2678] [2679] [2680] [2681] [2682] [2683] [2684] [2685]
Overfull \hbox (21.78088pt too wide) in paragraph at lines 7785--7785
 []        \T1/zi4/m/sl/10 block.size=50000,newdata.guaranteed=FALSE,na.action=
na.pass,cluster=NULL,...)[] 
[2686]
Underfull \hbox (badness 1852) in paragraph at lines 7854--7857
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and
[2687] [2688] [2689]
Underfull \hbox (badness 1852) in paragraph at lines 8006--8009
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and
[2690] [2691]
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Underfull \hbox (badness 1205) in paragraph at lines 8214--8216
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 8214--8216
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 8220--8225
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2693] [2694]
Underfull \hbox (badness 1205) in paragraph at lines 8304--8306
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 8304--8306
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[2695] [2696] [2697]
Underfull \hbox (badness 1253) in paragraph at lines 8503--8505
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[2698] [2699] [2700]
Underfull \hbox (badness 4792) in paragraph at lines 8689--8692
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/
10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m
/n/10 can be used:
Underfull \hbox (badness 10000) in paragraph at lines 8689--8692
\T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo
th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[2701]
Underfull \hbox (badness 10000) in paragraph at lines 8768--8771
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1
0 "deviance"\T1/ptm/m/n/10 ,
[2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710]
Underfull \hbox (badness 1975) in paragraph at lines 9288--9293
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2711]
Underfull \hbox (badness 1762) in paragraph at lines 9377--9389
\T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T
1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr
es-sion splines with
[2712] [2713] [2714] [2715]
Underfull \hbox (badness 7667) in paragraph at lines 9587--9593
[][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one
 or two vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 9628--9629
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2716] [2717]
Underfull \hbox (badness 10000) in paragraph at lines 9757--9759
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2718] [2719]
Underfull \hbox (badness 10000) in paragraph at lines 9885--9886
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2720] [2721] [2722]
Underfull \hbox (badness 1436) in paragraph at lines 10023--10028
\T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i
) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one
[2723] [2724] [2725] [2726] [2727] [2728] [2729]
Underfull \hbox (badness 10000) in paragraph at lines 10470--10476
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
[2730] [2731] [2732]
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Overfull \hbox (7.9809pt too wide) in paragraph at lines 10768--10768
 []\T1/zi4/m/n/9 b <- gam(z~s(x,y,k=c(30,15),bs="so",xt=list(bnd=bnd,nmax=nmax)
),knots=knots,method="REML")[] 
[2735]
Underfull \hbox (badness 10000) in paragraph at lines 10814--10815
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2736] [2737] [2738] [2739]
Underfull \hbox (badness 3895) in paragraph at lines 11074--11079
[][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any
 num-ber of vari-ables, spec-i-fied via terms like
[2740]
Underfull \hbox (badness 10000) in paragraph at lines 11119--11121
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2741] [2742] [2743]
Underfull \hbox (badness 1371) in paragraph at lines 11300--11306
[]\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive
 smooths are avail-able (see
[2744]
Underfull \hbox (badness 10000) in paragraph at lines 11340--11344
[][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/
zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre
ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 11340--11344
\T1/ptm/m/n/10 code[][]soap[][][], code[][]Spherical.Spline[][][], [][]\T1/zi4/
m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.defined.
smooth[][][]\T1/ptm/m/n/10 ,
[2745]
Underfull \hbox (badness 2326) in paragraph at lines 11413--11420
[]\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied
 us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and
[2746] [2747]
Underfull \hbox (badness 2158) in paragraph at lines 11498--11498
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[2748] [2749] [2750] [2751] [2752] [2753] [2754] [2755] [2756] [2757] [2758]
[2759] [2760] [2761] [2762] [2763] [2764] [2765] [2766] [2767] [2768] [2769]
Underfull \hbox (badness 1796) in paragraph at lines 12851--12854
[]\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/
sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar
[2770] [2771] [2772] [2773] [2774]) (./nlme-pkg.tex
Chapter 25.
[2775] [2776] [2777] [2778] [2779] [2780] [2781] [2782] [2783] [2784] [2785]
[2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796]
[2797] [2798] [2799] [2800] [2801] [2802] [2803] [2804]
Underfull \hbox (badness 2875) in paragraph at lines 1998--2004
[]\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat-
ing a co-vari-ate
Underfull \hbox (badness 1466) in paragraph at lines 1998--2004
\T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1
0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 ,
[2805] [2806] [2807] [2808]
Underfull \hbox (badness 10000) in paragraph at lines 2259--2265
[][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi
alize.corStruct[][][]\T1/ptm/m/n/10 ,
[2809] [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819]
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\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
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[2853]
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[][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/
m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo
variate.varFunc[][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 
,
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[][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou
psFormula.lme[][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC
ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.
gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n
/10 ,
[2883] [2884] [2885] [2886]
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[][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize
.glsStruct[][][]\T1/ptm/m/n/10 ,
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[2898]
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[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
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[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[2906] [2907] [2908] [2909]
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[][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi
st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/
10 ,
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[][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik
.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm
/m/n/10 ,
[2919] [2920] [2921] [2922] [2923]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9660 ...rA{Matrix}{Assign Matrix Values}{Matrix}
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                   \relax 
l.9660 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [2924] [2925] [2926]
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[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[2936] [2937]
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[][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm
e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm
eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10
 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 ,
[2938] [2939] [2940] [2941]
Underfull \hbox (badness 10000) in paragraph at lines 10809--10811
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952]
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[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl
/10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or
[2984] [2985] [2986] [2987] [2988] [2989] [2990] [2991]
Underfull \hbox (badness 1215) in paragraph at lines 14192--14194
[]\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis.
 De-faults to
[2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002]
[3003] [3004]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.random.effects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15073 ...Extract Random Effects}{random.effects}
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                   \relax 
l.15073 ...Extract Random Effects}{random.effects}
                                                   [3005] [3006] [3007]
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\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[3016] [3017] [3018] [3019]
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\T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for 
the "raw" resid-u-als (ob-served - fit-ted),
[3020] [3021]
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[]\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form
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\T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+
...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for
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[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
[3031] [3032] [3033] [3034]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T
1/zi4/m/sl/10 pdMat
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\T1/ptm/m/n/10 class. De-fault de-pends on the method func-tion: \T1/zi4/m/sl/1
0 "Blocked" \T1/ptm/m/n/10 for
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\T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \
T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D
iagonal"
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\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Mult
iple of an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "General Positive-Definite, Natural Parametrization"
Underfull \hbox (badness 10000) in paragraph at lines 17065--17074
\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "G
eneral Positive-Definite" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdSymm\T1/ptm/m/n/
10 , and
[3035]
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\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con
stant plus power of covariate" \T1/ptm/m/n/10 for
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\T1/zi4/m/sl/10 "Different standard deviations per stratum" \T1/ptm/m/n/10 for 
\T1/zi4/m/sl/10 varIdent\T1/ptm/m/n/10 ,
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[3047]
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[][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1
0 ,
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[][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl
/10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa
ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari
ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/
m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 ,
[3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063]
[3064] [3065]) (./nnet-pkg.tex [3066]
Chapter 26.
[3067]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[3068] [3069] [3070] [3071] [3072] [3073] [3074]) (./rpart-pkg.tex
Chapter 27.
[3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085]
[3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096]
[3097] [3098] [3099] [3100] [3101] [3102] [3103]) (./spatial-pkg.tex [3104]
Chapter 28.
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[3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121]
[3122] [3123]) (./survival-pkg.tex [3124]
Chapter 29.
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                   \relax 
l.267 ... Myelogenous Leukemia survival data}{aml}
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l.267 ... Myelogenous Leukemia survival data}{aml}
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                   \relax 
l.1029 ...erapy for Stage B/C colon cancer}{colon}
                                                  
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[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
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[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m
/n/10 , which is the re-sult of the
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[]\T1/ptm/m/n/10 an ar-ray con-tain-ing the ex-pected num-ber of events (or per
-son years if
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[]\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response
"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d
fbeta"\T1/ptm/m/n/10 ,
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[3203]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the
 form
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\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d
icted sur-vival
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[][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
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[3235]) [3236] (./fullrefman.ind [3237] [3238] [3239] [3240] [3241] [3242]
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[]| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
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Chapter 1.
Underfull \hbox (badness 4595) in paragraph at lines 40--43
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[3] [4]
Underfull \hbox (badness 1960) in paragraph at lines 137--145
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 137--145
\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is
Underfull \hbox (badness 1668) in paragraph at lines 148--155
[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[5] [6]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[7] [8]
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[9] [10]
Underfull \hbox (badness 2556) in paragraph at lines 505--511
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1094--1097
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21]
Underfull \hbox (badness 4072) in paragraph at lines 1302--1308
[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1809--1809
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[47] [48] [49] [50] [51] [52]
Underfull \hbox (badness 10000) in paragraph at lines 3452--3454
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[68] [69]
Underfull \hbox (badness 2521) in paragraph at lines 4608--4610
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[85] [86]
Underfull \hbox (badness 2096) in paragraph at lines 5827--5840
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[87] [88] [89] [90]
Underfull \hbox (badness 10000) in paragraph at lines 6149--6152
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[91] [92]
Underfull \hbox (badness 2635) in paragraph at lines 6313--6319
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move
Underfull \hbox (badness 2173) in paragraph at lines 6313--6319
\T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and 
web-pages gen-er-ated by
Underfull \hbox (badness 4441) in paragraph at lines 6313--6319
\T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o
m-mended) when writ-ing it
Underfull \hbox (badness 1895) in paragraph at lines 6313--6319
\T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha
r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or
[93]
Underfull \hbox (badness 3568) in paragraph at lines 6374--6381
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
[94] [95]
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[97] [98] [99] [100] [101] [102]
Underfull \hbox (badness 4595) in paragraph at lines 6979--6982
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[103]
Underfull \hbox (badness 2351) in paragraph at lines 7037--7040
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[104] [105] [106] [107]
Underfull \hbox (badness 10000) in paragraph at lines 7287--7298
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[108]
Underfull \hbox (badness 4479) in paragraph at lines 7359--7368
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
Underfull \hbox (badness 2469) in paragraph at lines 7359--7368
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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Underfull \hbox (badness 1394) in paragraph at lines 8923--8928
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[130] [131] [132] [133] [134]
Underfull \hbox (badness 1052) in paragraph at lines 9260--9265
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check
Underfull \hbox (badness 1231) in paragraph at lines 9260--9265
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[135] [136]
Underfull \hbox (badness 10000) in paragraph at lines 9398--9402
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 2150) in paragraph at lines 9789--9792
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
Underfull \hbox (badness 6396) in paragraph at lines 9803--9811
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
Underfull \hbox (badness 2409) in paragraph at lines 9844--9851
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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[155] [156] [157]
Underfull \hbox (badness 4569) in paragraph at lines 10887--10891
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment
Underfull \hbox (badness 2401) in paragraph at lines 10887--10891
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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Underfull \hbox (badness 2698) in paragraph at lines 11431--11440
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed
Underfull \hbox (badness 4341) in paragraph at lines 11431--11440
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[177]
Underfull \hbox (badness 2253) in paragraph at lines 12383--12385
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[178] [179]
Underfull \hbox (badness 1565) in paragraph at lines 12444--12448
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
Underfull \hbox (badness 10000) in paragraph at lines 12487--12489
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[180] [181]
Underfull \hbox (badness 1466) in paragraph at lines 12625--12628
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[182] [183]
Underfull \hbox (badness 10000) in paragraph at lines 12733--12737
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 12744--12747
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
[184] [185] [186]
Underfull \hbox (badness 3965) in paragraph at lines 12991--12995
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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Underfull \hbox (badness 4429) in paragraph at lines 13708--13711
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[198]
Underfull \hbox (badness 10000) in paragraph at lines 13794--13796
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so
Underfull \hbox (badness 10000) in paragraph at lines 13800--13804
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[199]
Underfull \hbox (badness 2790) in paragraph at lines 13839--13842
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is
 not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1
0 meth-ods: use
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[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 14410--14414
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[208] [209]
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[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[210] [211] [212] [213]
Underfull \hbox (badness 6741) in paragraph at lines 14809--14813
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[214] [215] [216] [217]
Underfull \hbox (badness 1867) in paragraph at lines 15115--15122
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[218] [219] [220] [221]
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[223]
Underfull \hbox (badness 3679) in paragraph at lines 15486--15488
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 1478) in paragraph at lines 15966--15969
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[230] [231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 16214--16216
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[233] [234] [235] [236] [237] [238] [239] [240]
Underfull \hbox (badness 1442) in paragraph at lines 16748--16750
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[241]
Underfull \hbox (badness 2452) in paragraph at lines 16840--16856
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[242] [243] [244] [245] [246] [247]
Underfull \hbox (badness 1248) in paragraph at lines 17247--17250
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4
/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 ,
[248] [249] [250] [251]
Underfull \hbox (badness 4739) in paragraph at lines 17500--17502
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[264] [265]
Underfull \hbox (badness 10000) in paragraph at lines 18408--18412
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory
Underfull \hbox (badness 2460) in paragraph at lines 18408--18412
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[266]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages
Underfull \hbox (badness 1354) in paragraph at lines 18543--18550
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and
[267]
Underfull \hbox (badness 1014) in paragraph at lines 18559--18564
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[268] [269] [270] [271] [272] [273] [274] [275] [276] [277]
Underfull \hbox (badness 1264) in paragraph at lines 19273--19278
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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Underfull \hbox (badness 10000) in paragraph at lines 20021--20023
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
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[300] [301] [302] [303]
Underfull \hbox (badness 1655) in paragraph at lines 21009--21015
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[304] [305]
Underfull \hbox (badness 1484) in paragraph at lines 21170--21178
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[306] [307] [308] [309]
Underfull \hbox (badness 2790) in paragraph at lines 21441--21444
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 21441--21444
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[310] [311] [312] [313]
Underfull \hbox (badness 1194) in paragraph at lines 21720--21723
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[314] [315] [316]
Underfull \hbox (badness 10000) in paragraph at lines 21921--21924
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:
Underfull \hbox (badness 10000) in paragraph at lines 21921--21924
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
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[329] [330] [331]
Underfull \hbox (badness 1199) in paragraph at lines 22973--22979
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"
Underfull \hbox (badness 2027) in paragraph at lines 22973--22979
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[332] [333] [334] [335] [336] [337] [338] [339]
Underfull \hbox (badness 1038) in paragraph at lines 23512--23521
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially
Underfull \hbox (badness 1881) in paragraph at lines 23522--23525
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 23541--23543
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[340]
Underfull \hbox (badness 10000) in paragraph at lines 23607--23617
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to
Underfull \hbox (badness 2142) in paragraph at lines 23618--23624
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 23631--23636
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 23641--23643
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[341] [342]
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-
Underfull \hbox (badness 10000) in paragraph at lines 23881--23887
\T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by
[343]
Underfull \hbox (badness 10000) in paragraph at lines 23893--23896
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
Underfull \hbox (badness 2689) in paragraph at lines 23917--23919
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
Underfull \hbox (badness 7203) in paragraph at lines 23950--23953
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and
Underfull \hbox (badness 2735) in paragraph at lines 23960--23971
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der the CRAN OS X build),
Underfull \hbox (badness 10000) in paragraph at lines 23960--23971
\T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave
ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 
.
Underfull \hbox (badness 10000) in paragraph at lines 23973--23980
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to
Underfull \hbox (badness 10000) in paragraph at lines 23973--23980
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a
Underfull \hbox (badness 6380) in paragraph at lines 23973--23980
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like
Underfull \hbox (badness 1082) in paragraph at lines 23973--23980
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[344] [345] [346] [347] [348]
Underfull \hbox (badness 10000) in paragraph at lines 24286--24290
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion
Underfull \hbox (badness 10000) in paragraph at lines 24286--24290
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[349] [350] [351] [352]
Underfull \hbox (badness 1735) in paragraph at lines 24604--24608
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[353] [354] [355] [356] [357] [358] [359] [360] [361]
Underfull \hbox (badness 2726) in paragraph at lines 25128--25131
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373]
Underfull \hbox (badness 1052) in paragraph at lines 25947--25952
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[374] [375] [376] [377] [378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 1533) in paragraph at lines 26675--26678
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395]
[396] [397] [398] [399] [400] [401] [402] [403] [404] [405] [406] [407]
Underfull \hbox (badness 10000) in paragraph at lines 28330--28334
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 28330--28334
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
Underfull \hbox (badness 6188) in paragraph at lines 28352--28354
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 1655) in paragraph at lines 28897--28899
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[416] [417] [418] [419] [420] [421] [422] [423] [424] [425]
Underfull \hbox (badness 10000) in paragraph at lines 29565--29569
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[426] [427] [428]
Underfull \hbox (badness 2302) in paragraph at lines 29798--29805
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,
Underfull \hbox (badness 2837) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing
Underfull \hbox (badness 2980) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,
Underfull \hbox (badness 2181) in paragraph at lines 29798--29805
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[429] [430]
Underfull \hbox (badness 2261) in paragraph at lines 29952--29957
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[431]
Underfull \hbox (badness 10000) in paragraph at lines 29979--29985
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[432]
Underfull \hbox (badness 10000) in paragraph at lines 30055--30060
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444]
[445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456]
[457] [458] [459] [460]
Underfull \vbox (badness 10000) has occurred while \output is active [461]
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471]
Underfull \hbox (badness 1072) in paragraph at lines 32829--32833
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 32834--32838
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
Underfull \hbox (badness 10000) in paragraph at lines 32862--32868
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 32862--32868
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 32862--32868
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
[472]
Underfull \hbox (badness 3343) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 32875--32882
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[473] [474] [475] [476]
Underfull \hbox (badness 10000) in paragraph at lines 33171--33177
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is
Underfull \hbox (badness 1152) in paragraph at lines 33171--33177
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488]
[489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500]
[501] [502]
Underfull \hbox (badness 3333) in paragraph at lines 34897--34902
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[503] [504] [505] [506] [507] [508] [509] [510] [511]
Underfull \hbox (badness 1472) in paragraph at lines 35504--35507
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[512] [513] [514] [515] [516] [517] [518] [519] [520] [521]
Underfull \hbox (badness 2671) in paragraph at lines 36166--36169
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[522] [523] [524] [525] [526]
Underfull \hbox (badness 10000) in paragraph at lines 36570--36573
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[527] [528]
Underfull \hbox (badness 10000) in paragraph at lines 36691--36695
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[529]
Underfull \hbox (badness 10000) in paragraph at lines 36753--36757
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541]
[542] [543] [544] [545] [546]
Underfull \hbox (badness 1990) in paragraph at lines 37971--37979
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 37971--37979
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[547] [548] [549] [550] [551]
Underfull \hbox (badness 1515) in paragraph at lines 38243--38248
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[552] [553] [554]
Underfull \hbox (badness 1917) in paragraph at lines 38473--38480
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[555] [556] [557] [558] [559] [560] [561] [562]
Underfull \hbox (badness 3668) in paragraph at lines 39045--39047
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[563]
Underfull \hbox (badness 2401) in paragraph at lines 39150--39154
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[564] [565] [566]
Underfull \hbox (badness 2111) in paragraph at lines 39319--39324
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.
Underfull \hbox (badness 6542) in paragraph at lines 39335--39340
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[567] [568] [569] [570] [571] [572] [573]
Underfull \hbox (badness 10000) in paragraph at lines 39769--39774
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]
Underfull \hbox (badness 10000) in paragraph at lines 39769--39774
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[574]
Underfull \hbox (badness 5417) in paragraph at lines 39861--39865
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[575]
Underfull \hbox (badness 10000) in paragraph at lines 39922--39926
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[576]) (./compiler-pkg.tex
Chapter 2.
[577] [578] [579]) (./datasets-pkg.tex [580]
Chapter 3.
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[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
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[593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604]
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[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[642] [643] [644] [645] [646] [647] [648] [649] [650]
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[652] [653] [654]) (./grDevices-pkg.tex
Chapter 4.
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[667] [668] [669] [670]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
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\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[677]
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
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[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
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\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
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[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
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[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[720]
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as
[722]
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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,
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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and
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\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,
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\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[727] [728]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /
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\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[729] [730]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[731]
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[732] [733] [734] [735] [736] [737]
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[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[738] [739] [740] [741] [742] [743]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[744] [745]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[746] [747] [748] [749]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[752] [753] [754]) (./graphics-pkg.tex
Chapter 5.
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.
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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[885]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8638 \HeaderA{units}{Graphical Units}{units}
                                               [886] [887] [888] [889])
(./grid-pkg.tex [890]
Chapter 6.
[891] [892] [893] [894] [895] [896]
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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[918] [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929]
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[954] [955] [956] [957] [958]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[959] [960] [961] [962]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[975] [976] [977] [978] [979] [980] [981]
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[990] [991] [992] [993]) (./methods-pkg.tex [994]
Chapter 7.
[995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005]
[1006] [1007] [1008] [1009] [1010] [1011] [1012]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class
Underfull \hbox (badness 1038) in paragraph at lines 2028--2033
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028]
Underfull \hbox (badness 10000) in paragraph at lines 2628--2631
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1029] [1030]
Underfull \hbox (badness 1132) in paragraph at lines 2768--2772
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1031] [1032] [1033] [1034] [1035] [1036] [1037]
Underfull \hbox (badness 1102) in paragraph at lines 3308--3310
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1038] [1039] [1040] [1041]
Underfull \hbox (badness 10000) in paragraph at lines 3637--3642
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
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[]\T1/ptm/m/n/10 The
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[1053] [1054]
Underfull \hbox (badness 1436) in paragraph at lines 4550--4553
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment
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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1055] [1056] [1057] [1058] [1059] [1060] [1061]
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[1063]
Underfull \hbox (badness 1092) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,
Underfull \hbox (badness 1117) in paragraph at lines 5251--5258
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and
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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1064] [1065] [1066] [1067] [1068]
Underfull \hbox (badness 1087) in paragraph at lines 5619--5624
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1069] [1070] [1071]
Underfull \hbox (badness 2221) in paragraph at lines 5845--5850
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079]
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[1081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6707 \aliasA{S4}{S3Part}{S4}
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                   \relax 
l.6983 \aliasA{Complex}{S4groupGeneric}{Complex}
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 ignored
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                   \relax 
l.6985 \aliasA{Logic}{S4groupGeneric}{Logic}
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                   \relax 
l.6986 \aliasA{Math}{S4groupGeneric}{Math}
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l.6988 \aliasA{Ops}{S4groupGeneric}{Ops}
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                   \relax 
l.6989 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1086] [1087] [1088]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099]
[1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
[1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119]
Underfull \hbox (badness 1852) in paragraph at lines 9641--9645
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1120] [1121] [1122] [1123]) (./parallel-pkg.tex [1124]
Chapter 8.
Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135]
[1136] [1137] [1138] [1139] [1140] [1141] [1142]
Underfull \hbox (badness 3386) in paragraph at lines 1246--1249
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1143] [1144] [1145]) (./splines-pkg.tex [1146]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157]
[1158] [1159]) (./stats-pkg.tex [1160]
Chapter 10.
[1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171]
[1172]
Underfull \hbox (badness 1412) in paragraph at lines 843--845
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180]
Underfull \hbox (badness 2503) in paragraph at lines 1324--1327
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1181] [1182]
Underfull \hbox (badness 10000) in paragraph at lines 1503--1507
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192]
Underfull \hbox (badness 3965) in paragraph at lines 2163--2165
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1193] [1194] [1195] [1196] [1197]
Underfull \hbox (badness 3965) in paragraph at lines 2495--2497
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208]
[1209]
Underfull \hbox (badness 2503) in paragraph at lines 3308--3311
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220]
[1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \hbox (badness 3989) in paragraph at lines 4528--4535
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236]
Underfull \hbox (badness 2932) in paragraph at lines 5144--5146
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1237] [1238] [1239] [1240]
Underfull \hbox (badness 1142) in paragraph at lines 5385--5397
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1241] [1242]
Underfull \hbox (badness 2503) in paragraph at lines 5524--5528
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1243]
Underfull \hbox (badness 1168) in paragraph at lines 5585--5590
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1244] [1245] [1246] [1247] [1248] [1249] [1250]
Underfull \hbox (badness 8132) in paragraph at lines 6027--6032
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1251] [1252] [1253] [1254]
Underfull \hbox (badness 7081) in paragraph at lines 6302--6305
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method
Underfull \hbox (badness 10000) in paragraph at lines 6306--6308
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1255] [1256] [1257] [1258] [1259]
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[1261] [1262] [1263] [1264] [1265] [1266]
Underfull \hbox (badness 10000) in paragraph at lines 7114--7117
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1267] [1268]
Underfull \hbox (badness 10000) in paragraph at lines 7251--7254
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279]
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Underfull \hbox (badness 2626) in paragraph at lines 8726--8729
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1291] [1292]
Underfull \hbox (badness 2503) in paragraph at lines 8826--8830
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1293] [1294] [1295] [1296] [1297]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9160--9162
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]
Underfull \hbox (badness 1019) in paragraph at lines 9826--9829
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1308] [1309] [1310]
Underfull \hbox (badness 4518) in paragraph at lines 10087--10092
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1311] [1312] [1313] [1314] [1315]
Underfull \hbox (badness 2142) in paragraph at lines 10430--10433
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
Underfull \hbox (badness 1253) in paragraph at lines 10449--10452
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1316]
Underfull \hbox (badness 1708) in paragraph at lines 10511--10514
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1317] [1318] [1319] [1320] [1321]
Underfull \hbox (badness 1694) in paragraph at lines 10890--10893
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1322]
Underfull \hbox (badness 1867) in paragraph at lines 10909--10918
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1323] [1324] [1325] [1326] [1327] [1328] [1329]pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i
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<to be read again> 
                   \relax 
l.11356 \aliasA{hat}{influence.measures}{hat}
                                              [1330]
Underfull \hbox (badness 1484) in paragraph at lines 11478--11480
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339]
Underfull \hbox (badness 4441) in paragraph at lines 12036--12038
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1340] [1341] [1342] [1343] [1344]
Underfull \hbox (badness 2894) in paragraph at lines 12377--12381
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 4518) in paragraph at lines 13072--13077
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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Underfull \hbox (badness 4518) in paragraph at lines 13719--13724
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383]
Underfull \hbox (badness 2503) in paragraph at lines 14919--14923
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1384] [1385] [1386] [1387] [1388] [1389] [1390]
Underfull \hbox (badness 1418) in paragraph at lines 15428--15434
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
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[1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
[1413] [1414] [1415]
Underfull \hbox (badness 2359) in paragraph at lines 17051--17053
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1416]
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[1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429]
Underfull \hbox (badness 1377) in paragraph at lines 17962--17967
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
Underfull \hbox (badness 1735) in paragraph at lines 17967--17970
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1184) in paragraph at lines 17980--17984
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to
[1430]
Underfull \hbox (badness 2662) in paragraph at lines 17988--17992
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1431] [1432]
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[1434] [1435] [1436] [1437] [1438] [1439]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450]
[1451]
Underfull \hbox (badness 5563) in paragraph at lines 19330--19332
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for
Underfull \hbox (badness 1194) in paragraph at lines 19333--19336
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1452] [1453] [1454] [1455] [1456] [1457]
Underfull \hbox (badness 2503) in paragraph at lines 19699--19702
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 19726--19728
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468]
[1469] [1470] [1471] [1472] [1473]
Underfull \hbox (badness 10000) in paragraph at lines 20712--20718
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484]
[1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494]
Underfull \hbox (badness 1337) in paragraph at lines 22027--22033
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505]
[1506]
Underfull \hbox (badness 10000) in paragraph at lines 22820--22823
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514]
Underfull \hbox (badness 10000) in paragraph at lines 23395--23398
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1515]
Underfull \hbox (badness 3690) in paragraph at lines 23446--23450
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1516] [1517] [1518] [1519]
Underfull \hbox (badness 7667) in paragraph at lines 23712--23714
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1520] [1521] [1522]
Underfull \hbox (badness 3439) in paragraph at lines 23915--23921
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530]
Underfull \hbox (badness 10000) in paragraph at lines 24463--24468
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541]
[1542] [1543] [1544]
Underfull \vbox (badness 10000) has occurred while \output is active [1545]
Underfull \hbox (badness 3514) in paragraph at lines 25479--25484
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1546]
Underfull \hbox (badness 3514) in paragraph at lines 25541--25546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1547]
Underfull \hbox (badness 3514) in paragraph at lines 25598--25603
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1548]
Underfull \hbox (badness 3514) in paragraph at lines 25659--25665
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1549] [1550] [1551] [1552]
Underfull \hbox (badness 3514) in paragraph at lines 25872--25877
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1553]
Underfull \hbox (badness 3514) in paragraph at lines 25928--25933
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Underfull \hbox (badness 3514) in paragraph at lines 25985--25990
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1554]
Underfull \hbox (badness 3514) in paragraph at lines 26040--26045
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1555]
Underfull \hbox (badness 6691) in paragraph at lines 26109--26114
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563]
Underfull \hbox (badness 10000) in paragraph at lines 26633--26636
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-
Underfull \hbox (badness 10000) in paragraph at lines 26633--26636
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 5431) in paragraph at lines 27239--27241
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1574] [1575] [1576]
Underfull \hbox (badness 5431) in paragraph at lines 27449--27452
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1577] [1578] [1579] [1580] [1581]
Underfull \hbox (badness 1337) in paragraph at lines 27761--27765
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1582] [1583]
Underfull \hbox (badness 10000) in paragraph at lines 27878--27881
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1584] [1585] [1586]
Underfull \hbox (badness 1616) in paragraph at lines 28061--28064
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[1598] [1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 10000) in paragraph at lines 29188--29192
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1604] [1605] [1606] [1607] [1608] [1609]
Underfull \hbox (badness 1337) in paragraph at lines 29551--29555
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617]
Underfull \hbox (badness 1337) in paragraph at lines 30035--30039
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1618]
Underfull \hbox (badness 5161) in paragraph at lines 30128--30130
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1619] [1620] [1621] [1622] [1623]
Underfull \hbox (badness 10000) in paragraph at lines 30492--30497
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1624] [1625] [1626]) (./stats4-pkg.tex
Chapter 11.
[1627] [1628] [1629] [1630] [1631] [1632]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1633] [1634] [1635])
(./tcltk-pkg.tex [1636]
Chapter 12.
[1637] [1638] [1639] [1640] [1641] [1642] [1643]
Underfull \vbox (badness 10000) has occurred while \output is active [1644]
Underfull \hbox (badness 1546) in paragraph at lines 649--656
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655]
Underfull \hbox (badness 3375) in paragraph at lines 1390--1393
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1656]) (./tools-pkg.tex
Chapter 13.
[1657]
LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.
[1658]
Underfull \hbox (badness 3039) in paragraph at lines 164--167
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1659] [1660]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1661]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[1669] [1670] [1671] [1672]
Underfull \hbox (badness 1635) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1673]
Underfull \hbox (badness 4441) in paragraph at lines 1119--1127
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
Underfull \hbox (badness 1014) in paragraph at lines 1139--1141
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
[1674]
Underfull \hbox (badness 10000) in paragraph at lines 1168--1171
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
Overfull \hbox (15.52087pt too wide) in paragraph at lines 1168--1171
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1675] [1676]
Underfull \hbox (badness 10000) in paragraph at lines 1296--1298
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1677] [1678]
Underfull \hbox (badness 7981) in paragraph at lines 1466--1470
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
Underfull \hbox (badness 1082) in paragraph at lines 1472--1474
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1679] [1680] [1681] [1682]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1668 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1683]
Underfull \hbox (badness 5726) in paragraph at lines 1794--1799
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject
Underfull \hbox (badness 7221) in paragraph at lines 1794--1799
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1684] [1685] [1686] [1687] [1688] [1689] [1690]
Underfull \hbox (badness 7981) in paragraph at lines 2185--2191
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1691] [1692] [1693] [1694]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 2444.
[1695] [1696] [1697]
Underfull \hbox (badness 1424) in paragraph at lines 2681--2683
[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707]
Underfull \hbox (badness 10000) in paragraph at lines 3371--3373
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1708] [1709] [1710] [1711] [1712]
Underfull \hbox (badness 1838) in paragraph at lines 3708--3714
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The
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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1713]
Underfull \hbox (badness 5726) in paragraph at lines 3788--3793
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject
Underfull \hbox (badness 7221) in paragraph at lines 3788--3793
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1714] [1715]
Underfull \hbox (badness 1688) in paragraph at lines 3930--3942
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1716] [1717] [1718] [1719]) (./utils-pkg.tex [1720]
Chapter 14.
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1721] [1722] [1723]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-
Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1724] [1725] [1726] [1727] [1728]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3343) in paragraph at lines 543--549
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1729] [1730]
Underfull \hbox (badness 5847) in paragraph at lines 656--662
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-
Underfull \hbox (badness 4229) in paragraph at lines 656--662
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
Underfull \hbox (badness 3861) in paragraph at lines 724--729
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739]
Underfull \hbox (badness 1371) in paragraph at lines 1312--1314
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1740] [1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 2057) in paragraph at lines 1761--1763
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1746] [1747]
Underfull \hbox (badness 10000) in paragraph at lines 1855--1857
[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1748]
Underfull \hbox (badness 5189) in paragraph at lines 1945--1947
[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-
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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
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\T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
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[]\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/
ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win.
binary"\T1/ptm/m/n/10 : the bi-nary types can be
[1801]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed
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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p
tm/m/n/10 re-turned by
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[][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1
0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emacs
 / manual /
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via
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[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[]\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/
10 ar-gu-ment's spec-i-fi-ca-tion should be fol-
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\T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut"
, "wrap")\T1/ptm/m/n/10 . De-
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\T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po
-nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 
options[][][]\T1/ptm/m/n/10 )
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\T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back 
com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses
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[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
/10 ap-ply only to files pro-duced by
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . 
org /
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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
ined see
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[][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av
ailable = NULL \T1/ptm/m/n/10 make a call to
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[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For
 ex-am-ple,
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion
[1902] [1903] [1904]) [1905] [1906] (./KernSmooth-pkg.tex
Chapter 15.
[1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916])
(./MASS-pkg.tex
Chapter 16.
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[]\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo
r
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[]\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an
d graph-i-cal pa-ram-e-ters. Note that
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[]\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m
/sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \
T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "f"\T1/ptm/m/n/10 
,
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\T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/
10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T
1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1
/ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1
/ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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[]\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1
/ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m
/sl/10 cycles \T1/ptm/m/n/10 terms or when a
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[]\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/
10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[1984]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[1985] [1986] [1987] [1988] [1989] [1990]
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[]\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in
 the case of
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                                                   [2002]
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[]\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t
rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space
. That is
[2003] [2004] [2005] [2006]
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[2008] [2009] [2010] [2011] [2012] [2013] [2014]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[2015]
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[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2016] [2017] [2018]
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\T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n
ant com-po-nents are used (ex-cept for
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
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[]\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1
/ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m
/sl/10 cycles \T1/ptm/m/n/10 terms or when a
[2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038]
[2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046]
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[]\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e
x-pected fre-quen-cies in the re-sult. Us-ing
[2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057]
[2058] [2059] [2060] [2061] [2062] [2063]) (./Matrix-pkg.tex [2064]
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 42--45
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
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\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2065]
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[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2066] [2067] [2068] [2069]
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[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
[2070] [2071]
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[]\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f
rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z
i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a
[2072] [2073]
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[]\T1/ptm/m/n/10 In some ver-sions of \T1/phv/m/n/10 R\T1/ptm/m/n/10 , [][]\T1/
zi4/m/sl/10 eigen[][][](CAex) \T1/ptm/m/n/10 fell into an in-fi-nite loop (wher
eas
[2074] [2075]
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[]\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/
n/10 (or equiv-a-lently,
[2076] [2077]pdfTeX warning (ext4): destination with the same identifier (name{
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                   \relax 
l.1062 ...- 'Matrix' S4 Generic and Methods}{chol}
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                   \relax 
l.1062 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                   [2078pdfTeX warning (ext4): 
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                                                  \fi \fi 
l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works viapdfTeX warning (
ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth
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l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works viapdfTeX warning (
ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth
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l.1137 \item[chol]
                   \code{signature(x = "dgeMatrix")}: works via] [2079]
[2080]
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[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
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[]\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion 
[][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra
[2081] [2082]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("Cholesky",    ...) \T1/ptm/m/n/10 or
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and
 \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 "
dgeMatrix"\T1/ptm/m/n/10 , by class
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[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
[2083]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
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                   \relax 
l.1551 ... Row and Column Sums and Means}{colSums}
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                   \relax 
l.1551 ... Row and Column Sums and Means}{colSums}
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                   \relax 
l.1552 \aliasA{colMeans}{colSums}{colMeans}
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l.1573 \aliasA{rowMeans}{colSums}{rowMeans}
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                   \relax 
l.1584 \aliasA{rowSums}{colSums}{rowSums}
                                          [2084] [2085] [2086]
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[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2087] [2088] [2089] [2090] [2091]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("dgCMatrix",    ...)\T1/ptm/m/n/10 , more
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\T1/ptm/m/n/10 typ-i-cally via \T1/zi4/m/sl/10 as(*, "CsparseMatrix") \T1/ptm/m
/n/10 or sim-i-lar. Of-ten how-ever, more eas-ily via
[2092] [2093] [2094] [2095]
Underfull \hbox (badness 10000) in paragraph at lines 2488--2492
[]\T1/ptm/m/n/10 Note that both \T1/zi4/m/sl/10 new(.) \T1/ptm/m/n/10 and [][]\
T1/zi4/m/sl/10 spMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10
 "dgTMatrix" \T1/ptm/m/n/10 (and other
[2096]
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[]\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T
1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[]
[][] \T1/ptm/m/n/10 (with ``su-per-class''
[2097] [2098]
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[]\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi
v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
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[]\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro
up meth-ods re-turn a
[2099] [2100]
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[][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr
efer-able to (and more ef-fi-cient than)
[2101] [2102] [2103]
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[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n
ew("dsCMatrix",    ...) \T1/ptm/m/n/10 or
[2104] [2105] [2106] [2107] [2108] [2109]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C
lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi
4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 ,
[2110] [2111] [2112] [2113] [2114]
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[]\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite 
Tay-lor se-ries
[2115] [2116] [2117]
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 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/
Boeing/msc00726.tar.gz"))))[] 
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 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe
ll-Boeing/counterx/jgl009.mtx.gz"))))[] 
[2118] [2119]
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[]\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/
ptm/m/n/10 codes should be aligned, see
[2120] [2121] [2122] [2123] [2124]
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[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use
[2125]
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[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within
 the
[2126]
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[]\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o
ther sig-na-tures (use
[2127] [2128]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con-
tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault,
[2129] [2130] [2131]
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[]\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10
 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10
 is a tri-an-gu-lar ma-trix. Anal-o-gously,
[2132] [2133] [2134] [2135]
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[]\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2136]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde
nseMatrix"\T1/ptm/m/n/10 . Class
[2137]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2138]
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[]\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2139]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2140]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2141]
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[]\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth
-ods for dif-fer-ent types of ma-tri-ces. Use
[2142] [2143] [2144]
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[]\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math-
e-mat-i-cally''),
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[]\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1
/ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1
0 . How-ever,
[2145]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det
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l.6613 \aliasA{det}{Matrix-class}{det}
                                       [2146]
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[]\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1
/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing
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[2147]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
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                   \relax 
l.6779 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
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l.6871 ...A{crossprod}{matrix-products}{crossprod}
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                   \relax 
l.6956 ...tcrossprod}{matrix-products}{tcrossprod}
                                                   [2148pdfTeX warning (ext4): 
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\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
                                                  \fi \fi 
l.7076 \end{Arguments}
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\AtBegShi@Output ...ipout \box \AtBeginShipoutBox 
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l.7076 \end{Arguments}
                      ]
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[]\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o
ther sig-na-tures (use
[2149]
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[]\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio
n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1
/zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][]
\T1/ptm/m/n/10 , and
[2150]
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[]\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2151]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1
/ptm/m/n/10 should be done, af-ter
[2152] [2153]
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[]\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde
nseMatrix"\T1/ptm/m/n/10 . Class
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
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l.7750 \HeaderA{norm}{Matrix Norms}{norm}
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l.7750 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2158] [2159]
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[]\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2160]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2161]
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[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2162]
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[]\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth
er sig-na-tures (use
[2163]
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[]\T1/zi4/m/sl/10 signature(from = "pMatrix", to = "matrix")\T1/ptm/m/n/10 : co
-er-cion to a tra-di-tional
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l.8514 \aliasA{qr}{qr-methods}{qr}
                                  
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[]\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma-
trix with
[2167]
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of
[2168] [2169]pdfTeX warning (ext4): destination with the same identifier (name{
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                   \relax 
l.8749 ... the Reciprocal Condition Number}{rcond}
                                                   [2170] [2171] [2172]
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l.9318 \aliasA{solve}{solve-methods}{solve}
                                            [2178]
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[]\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list
[2179]
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[]\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T
1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing 
\T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and
[2180]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu
la and data frame
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[]\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co
-er-ca-ble to)
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
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                   \relax 
l.10293 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
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l.10572 ...toeplitz}{sparseVector-class}{toeplitz}
                                                   [2192]
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[]\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/
m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list
[2193]
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Underfull \hbox (badness 2653) in paragraph at lines 10788--10794
[][][]\T1/zi4/m/sl/10 Matrix[][][](*, sparse=TRUE) \T1/ptm/m/n/10 for the more 
usual con-struc-tor of such ma-tri-ces; sim-i-larly,
[2195] [2196]
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[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2197] [2198]
Underfull \hbox (badness 1831) in paragraph at lines 11119--11125
[]\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1
/zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar
e de-fined
[2199] [2200] [2201] [2202] [2203] [2204]
Underfull \hbox (badness 6910) in paragraph at lines 11567--11569
[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2205]) (./boot-pkg.tex [2206]
Chapter 18.
[2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216]
Underfull \hbox (badness 1097) in paragraph at lines 788--796
[]\T1/ptm/m/n/10 For most of the \T1/zi4/m/sl/10 boot \T1/ptm/m/n/10 meth-ods t
he re-sam-pling is done in the mas-ter pro-cess, but not if
Underfull \hbox (badness 4954) in paragraph at lines 797--807
\T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d
e-fault clus-ter, a sec-ond ap-proach is used if
[2217]
Underfull \hbox (badness 1881) in paragraph at lines 824--826
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2218]
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[2220]
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[]\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i
n-ter-
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\T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues
[2221]
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[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2222] [2223] [2224] [2225]
Underfull \hbox (badness 1571) in paragraph at lines 1443--1445
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2226] [2227] [2228] [2229] [2230] [2231]
Underfull \hbox (badness 1005) in paragraph at lines 1797--1804
[]\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 "
ordinary" \T1/ptm/m/n/10 (case re-sam-pling),
[2232] [2233]
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[2235]
Underfull \hbox (badness 7379) in paragraph at lines 2081--2083
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2236] [2237] [2238]
Underfull \hbox (badness 1565) in paragraph at lines 2335--2340
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2239]
Underfull \hbox (badness 1881) in paragraph at lines 2429--2431
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2240] [2241]
Underfull \hbox (badness 2970) in paragraph at lines 2533--2537
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s
l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t
he sam-ple
Underfull \hbox (badness 2310) in paragraph at lines 2533--2537
\T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl
/10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n
/10 is used. This is mul-ti-plied by
[2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252]
[2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263]
[2264] [2265]
Underfull \hbox (badness 10000) in paragraph at lines 4187--4189
[]\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault 
is
[2266] [2267] [2268]
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[]\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with 
fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by
[2269] [2270] [2271] [2272] [2273] [2274] [2275] [2276]
Underfull \hbox (badness 3000) in paragraph at lines 4956--4959
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2277] [2278] [2279] [2280]
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[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
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\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] [2290] [2291]
Underfull \hbox (badness 4954) in paragraph at lines 6016--6019
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa
ddle.distn"\T1/ptm/m/n/10 . See the help file for
[2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300]
Underfull \hbox (badness 1596) in paragraph at lines 6737--6741
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310])
(./class-pkg.tex
Chapter 19.
[2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318]
Underfull \hbox (badness 10000) in paragraph at lines 608--610
[]\T1/ptm/m/n/10 the size of the code-book. De-faults to
[2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326]) (./cluster-pkg.tex
Chapter 20.
[2327] [2328] [2329] [2330] [2331]
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[2333] [2334] [2335] [2336]
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[]\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem
-ory (and hence time), but dis-ables
[2337] [2338] [2339]
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[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2340]
Underfull \hbox (badness 10000) in paragraph at lines 936--938
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
[2341] [2342] [2343]
Underfull \hbox (badness 6110) in paragraph at lines 1114--1118
[]\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/
m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne
nt, e.g., for
[2344] [2345] [2346]
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[2347] [2348]
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[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or
 \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of
[2349] [2350] [2351] [2352] [2353] [2354] [2355] [2356]
Underfull \hbox (badness 10000) in paragraph at lines 2060--2062
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the con-verged. This is de-fined as
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[][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the 
[][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell
ipsoid \T1/ptm/m/n/10 ob-jects.
[2357] [2358] [2359] [2360]
Underfull \hbox (badness 6675) in paragraph at lines 2320--2322
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
[2361] [2362] [2363] [2364] [2365] [2366]
Underfull \hbox (badness 1616) in paragraph at lines 2733--2738
[]\T1/ptm/m/n/10 The de-fault \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 (or in-te-ge
r \T1/zi4/m/sl/10 0\T1/ptm/m/n/10 ) cor-re-sponds to the orig-i-nal ``swap'' al
-go-rithm, whereas
Underfull \hbox (badness 2980) in paragraph at lines 2771--2775
[][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc
es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl
ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 ,
[2367] [2368] [2369] [2370] [2371]
Underfull \hbox (badness 1142) in paragraph at lines 3109--3112
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2372] [2373]
Underfull \hbox (badness 1142) in paragraph at lines 3228--3231
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2374] [2375] [2376] [2377]
Underfull \hbox (badness 2582) in paragraph at lines 3451--3456
[][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi
4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p
tm/m/n/10 ,
[2378]
Underfull \hbox (badness 10000) in paragraph at lines 3513--3518
[]\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi
4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4378) in paragraph at lines 3513--3518
\T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T
1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider
[2379] [2380] [2381] [2382]
Underfull \hbox (badness 10000) in paragraph at lines 3805--3807
[]\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T
1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for
[2383] [2384] [2385] [2386]
Underfull \hbox (badness 4108) in paragraph at lines 4029--4034
[]\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/
n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col
[2387]
Underfull \hbox (badness 1062) in paragraph at lines 4084--4086
[]\T1/ptm/m/n/10 numeric (rank 1) ar-ray of clus-ter-wise \T1/ptm/m/it/10 means
 \T1/ptm/m/n/10 of sil-hou-ette widths where
Underfull \hbox (badness 1383) in paragraph at lines 4106--4111
[]\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m
/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T
1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial)
[2388] [2389] [2390] [2391] [2392] [2393] [2394] [2395] [2396])
(./codetools-pkg.tex
Chapter 21.
[2397] [2398] [2399] [2400] [2401]) (./foreign-pkg.tex [2402]
Chapter 22.
[2403] [2404] [2405] [2406] [2407] [2408] [2409] [2410] [2411] [2412] [2413]
Underfull \hbox (badness 10000) in paragraph at lines 734--735
[2414] [2415] [2416] [2417] [2418] [2419] [2420]
Underfull \hbox (badness 10000) in paragraph at lines 1188--1194
[]\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign
:::writeForeignStata\T1/ptm/m/n/10 ,
[2421] [2422]) (./lattice-pkg.tex
Chapter 23.
[2423] [2424] [2425] [2426] [2427] [2428]
Underfull \hbox (badness 10000) in paragraph at lines 480--485
[]\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales 
\T1/ptm/m/n/10 in this case may be
Underfull \hbox (badness 1237) in paragraph at lines 480--485
\T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh
ich would usu-ally
[2429] [2430] [2431] [2432] [2433] [2434] [2435] [2436] [2437] [2438]
Underfull \hbox (badness 1062) in paragraph at lines 1399--1403
\T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta
-tion for
[2439] [2440] [2441]
Underfull \hbox (badness 1803) in paragraph at lines 1567--1584
[][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack-
age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 1567--1584
[][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p
anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/sl/10 strip.default[][][]\T1/ptm/m/n/10 ,
[2442] [2443]
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[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][
][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1756--1760
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2444] [2445] [2446] [2447] [2448]
Underfull \hbox (badness 10000) in paragraph at lines 2142--2145
[]\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, 
the value of
[2449] [2450] [2451] [2452]
Underfull \hbox (badness 7064) in paragraph at lines 2365--2369
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z
i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form
[2453] [2454]
Underfull \hbox (badness 7064) in paragraph at lines 2550--2557
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z
i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form
[2455] [2456] [2457]
Underfull \hbox (badness 3291) in paragraph at lines 2764--2769
[]\T1/ptm/m/n/10 for the \T1/zi4/m/sl/10 formula \T1/ptm/m/n/10 method, a for-m
ula of the form \T1/zi4/m/sl/10 z ~ x * y
[2458]
Underfull \hbox (badness 2781) in paragraph at lines 2851--2853
[]\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col.
regions \T1/ptm/m/n/10 ar-gu-ment in
[2459]
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[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2460] [2461] [2462]
Underfull \hbox (badness 10000) in paragraph at lines 3113--3121
[]\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f
or-mula of the form \T1/zi4/m/sl/10 z ~ x
[2463] [2464] [2465] [2466]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.parallel}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3434 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2467] [2468] [2469] [2470]
[2471] [2472] [2473]
Underfull \hbox (badness 5696) in paragraph at lines 3925--3929
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings
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\T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme =
 "col.whitebg")\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2474] [2475]
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[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
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[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
[2476] [2477] [2478]
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[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 
is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo
t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4315--4317
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p
lot.polygon \T1/ptm/m/n/10 and
[2479] [2480] [2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488]
Underfull \hbox (badness 6157) in paragraph at lines 5038--5041
[]\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles
 via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and
[2489] [2490] [2491] [2492] [2493] [2494]
Underfull \hbox (badness 10000) in paragraph at lines 5489--5492
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 5592) in paragraph at lines 5489--5492
\T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le
ft of pan-els us-ing
[2495] [2496] [2497] [2498] [2499]
Underfull \hbox (badness 4805) in paragraph at lines 5849--5853
[]\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should 
be high-
Underfull \hbox (badness 10000) in paragraph at lines 5860--5867
[]\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t
ra pa-ram-e-ters are passed on to
Underfull \hbox (badness 1226) in paragraph at lines 5860--5867
\T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi
fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as
Underfull \hbox (badness 2418) in paragraph at lines 5860--5867
\T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z
i4/m/sl/10 trellis.focus
Underfull \hbox (badness 10000) in paragraph at lines 5860--5867
\T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar
e used (in com-bi-na-tion with
Underfull \hbox (badness 1259) in paragraph at lines 5860--5867
[][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th
e cho-sen view-port if so re-quested.
[2500] [2501] [2502] [2503]
Underfull \hbox (badness 4242) in paragraph at lines 6160--6165
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
Underfull \hbox (badness 2529) in paragraph at lines 6160--6165
\T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there
 is no group-ing vari-able, oth-er-wise
[2504] [2505]
Underfull \hbox (badness 2310) in paragraph at lines 6276--6281
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/
10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round
 if
[2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] [2516]
[2517] [2518] [2519] [2520]
Underfull \hbox (badness 2012) in paragraph at lines 7328--7331
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2521] [2522]
Underfull \hbox (badness 3333) in paragraph at lines 7500--7502
[]\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol
 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing
[2523] [2524] [2525] [2526] [2527] [2528]
Underfull \hbox (badness 1436) in paragraph at lines 7910--7916
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
Underfull \hbox (badness 1661) in paragraph at lines 7910--7916
\T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e
nce.line'' pa-ram-e-ter set-
Underfull \hbox (badness 1231) in paragraph at lines 7910--7916
\T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti
ngs. The
[2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536]
Underfull \hbox (badness 10000) in paragraph at lines 8468--8471
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp
ose \T1/ptm/m/n/10 from
Underfull \hbox (badness 1092) in paragraph at lines 8514--8516
[]\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 <Deepayan.Sarkar@R-project.org
> \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally
 con-
[2537] [2538] [2539]
Underfull \hbox (badness 3895) in paragraph at lines 8675--8678
[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T
1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2540]
Underfull \hbox (badness 1515) in paragraph at lines 8751--8755
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2541]
Underfull \hbox (badness 6316) in paragraph at lines 8857--8862
[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
[2542]
Underfull \hbox (badness 5908) in paragraph at lines 8874--8877
[]\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c
omponents.default \T1/ptm/m/n/10 and
[2543] [2544] [2545] [2546]
Overfull \hbox (29.94879pt too wide) in paragraph at lines 9162--9166
[]\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4
/m/sl/10 left,    right, left.name, right.name, condition
Overfull \hbox (20.63074pt too wide) in paragraph at lines 9162--9166
\T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left,    right.x, right.y, left.nam
e, right.x.name, right.y.name, condition
[2547] [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556]pdfTeX war
ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been
 already used, duplicate ignored
<to be read again> 
                   \relax 
l.9851 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                [2557] [2558] [2559] [2560])
(./mgcv-pkg.tex
Chapter 24.
Underfull \hbox (badness 1052) in paragraph at lines 40--42
[]\T1/ptm/m/n/10 selects ex-act test statis-tic to use for sin-gle smooth term 
p-values. See
[2561] [2562] [2563]
Underfull \hbox (badness 1142) in paragraph at lines 172--176
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 197--202
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2564]
Underfull \hbox (badness 2626) in paragraph at lines 252--255
[]\T1/ptm/m/n/10 If all smooths are P-splines and all ten-sor prod-ucts are of 
the form
[2565] [2566]
Underfull \hbox (badness 10000) in paragraph at lines 349--356
[][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m
gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/
n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 smooth.terms[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 7168) in paragraph at lines 349--356
[][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m
/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][]
[]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z
i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][]
\T1/ptm/m/n/10 ,
[2567] [2568] [2569]
Underfull \hbox (badness 1158) in paragraph at lines 573--575
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2570] [2571]
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[2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] [2583]
[2584] [2585] [2586] [2587] [2588] [2589]
Underfull \hbox (badness 1142) in paragraph at lines 1794--1798
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2590]
Underfull \hbox (badness 1043) in paragraph at lines 1820--1825
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2591] [2592] [2593] [2594] [2595]
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Underfull \vbox (badness 10000) has occurred while \output is active [2597]
[2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608]
[2609]
Underfull \hbox (badness 10000) in paragraph at lines 3052--3056
[]\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/
n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see
[2610] [2611]
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[2613] [2614] [2615] [2616] [2617] [2618] [2619] [2620] [2621] [2622]
Underfull \hbox (badness 1142) in paragraph at lines 3869--3873
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2623] [2624]
Underfull \hbox (badness 1231) in paragraph at lines 3965--3967
[]\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since
 it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with
[2625] [2626]
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[2628] [2629]
Underfull \hbox (badness 2181) in paragraph at lines 4305--4306
[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638]
Underfull \hbox (badness 1142) in paragraph at lines 4911--4915
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2639] [2640] [2641] [2642] [2643] [2644] [2645]
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Underfull \vbox (badness 10000) has occurred while \output is active [2647]
[2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657]
Underfull \hbox (badness 1242) in paragraph at lines 6018--6019
[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[2658] [2659] [2660] [2661] [2662] [2663] [2664] [2665]
Underfull \hbox (badness 6001) in paragraph at lines 6461--6463
[]\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 <simon.wood@r-project.org> \T1/p
tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's
[2666] [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674]
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Underfull \hbox (badness 1038) in paragraph at lines 7154--7157
[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim.
pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 7154--7157
\T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId
not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 ,
[2676]
Underfull \hbox (badness 10000) in paragraph at lines 7210--7213
[]\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z
i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T
1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 ,
[2677] [2678] [2679] [2680] [2681] [2682] [2683] [2684] [2685]
Overfull \hbox (21.78088pt too wide) in paragraph at lines 7785--7785
 []        \T1/zi4/m/sl/10 block.size=50000,newdata.guaranteed=FALSE,na.action=
na.pass,cluster=NULL,...)[] 
[2686]
Underfull \hbox (badness 1852) in paragraph at lines 7854--7857
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and
[2687] [2688] [2689]
Underfull \hbox (badness 1852) in paragraph at lines 8006--8009
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and
[2690] [2691]
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Underfull \hbox (badness 1205) in paragraph at lines 8214--8216
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 8214--8216
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 8220--8225
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2693] [2694]
Underfull \hbox (badness 1205) in paragraph at lines 8304--8306
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 8304--8306
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[2695] [2696] [2697]
Underfull \hbox (badness 1253) in paragraph at lines 8503--8505
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[2698] [2699] [2700]
Underfull \hbox (badness 4792) in paragraph at lines 8689--8692
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/
10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m
/n/10 can be used:
Underfull \hbox (badness 10000) in paragraph at lines 8689--8692
\T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo
th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[2701]
Underfull \hbox (badness 10000) in paragraph at lines 8768--8771
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1
0 "deviance"\T1/ptm/m/n/10 ,
[2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710]
Underfull \hbox (badness 1975) in paragraph at lines 9288--9293
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2711]
Underfull \hbox (badness 1762) in paragraph at lines 9377--9389
\T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T
1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr
es-sion splines with
[2712] [2713] [2714] [2715]
Underfull \hbox (badness 7667) in paragraph at lines 9587--9593
[][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one
 or two vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 9628--9629
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2716] [2717]
Underfull \hbox (badness 10000) in paragraph at lines 9757--9759
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2718] [2719]
Underfull \hbox (badness 10000) in paragraph at lines 9885--9886
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2720] [2721] [2722]
Underfull \hbox (badness 1436) in paragraph at lines 10023--10028
\T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i
) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one
[2723] [2724] [2725] [2726] [2727] [2728] [2729]
Underfull \hbox (badness 10000) in paragraph at lines 10470--10476
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
[2730] [2731] [2732]
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Overfull \hbox (7.9809pt too wide) in paragraph at lines 10768--10768
 []\T1/zi4/m/n/9 b <- gam(z~s(x,y,k=c(30,15),bs="so",xt=list(bnd=bnd,nmax=nmax)
),knots=knots,method="REML")[] 
[2735]
Underfull \hbox (badness 10000) in paragraph at lines 10814--10815
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2736] [2737] [2738] [2739]
Underfull \hbox (badness 3895) in paragraph at lines 11074--11079
[][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any
 num-ber of vari-ables, spec-i-fied via terms like
[2740]
Underfull \hbox (badness 10000) in paragraph at lines 11119--11121
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2741] [2742] [2743]
Underfull \hbox (badness 1371) in paragraph at lines 11300--11306
[]\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive
 smooths are avail-able (see
[2744]
Underfull \hbox (badness 10000) in paragraph at lines 11340--11344
[][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/
zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre
ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 11340--11344
\T1/ptm/m/n/10 code[][]soap[][][], code[][]Spherical.Spline[][][], [][]\T1/zi4/
m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.defined.
smooth[][][]\T1/ptm/m/n/10 ,
[2745]
Underfull \hbox (badness 2326) in paragraph at lines 11413--11420
[]\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied
 us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and
[2746] [2747]
Underfull \hbox (badness 2158) in paragraph at lines 11498--11498
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[2748] [2749] [2750] [2751] [2752] [2753] [2754] [2755] [2756] [2757] [2758]
[2759] [2760] [2761] [2762] [2763] [2764] [2765] [2766] [2767] [2768] [2769]
Underfull \hbox (badness 1796) in paragraph at lines 12851--12854
[]\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/
sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar
[2770] [2771] [2772] [2773] [2774]) (./nlme-pkg.tex
Chapter 25.
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[]\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat-
ing a co-vari-ate
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\T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1
0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 ,
[2805] [2806] [2807] [2808]
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[][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi
alize.corStruct[][][]\T1/ptm/m/n/10 ,
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\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
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[2853]
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[][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/
m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo
variate.varFunc[][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 
,
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[][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou
psFormula.lme[][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC
ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.
gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n
/10 ,
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[][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize
.glsStruct[][][]\T1/ptm/m/n/10 ,
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[2898]
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[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
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[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi
st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/
10 ,
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[][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik
.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm
/m/n/10 ,
[2919] [2920] [2921] [2922] [2923]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9660 ...rA{Matrix}{Assign Matrix Values}{Matrix}
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                   \relax 
l.9660 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [2924] [2925] [2926]
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[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
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[][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm
e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm
eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10
 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl
/10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or
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Underfull \hbox (badness 1215) in paragraph at lines 14192--14194
[]\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis.
 De-faults to
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[3003] [3004]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.random.effects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15073 ...Extract Random Effects}{random.effects}
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                   \relax 
l.15073 ...Extract Random Effects}{random.effects}
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\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
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\T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for 
the "raw" resid-u-als (ob-served - fit-ted),
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[]\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form
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\T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+
...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for
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[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T
1/zi4/m/sl/10 pdMat
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\T1/ptm/m/n/10 class. De-fault de-pends on the method func-tion: \T1/zi4/m/sl/1
0 "Blocked" \T1/ptm/m/n/10 for
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\T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \
T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D
iagonal"
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\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Mult
iple of an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/m/n/10 ,
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\T1/zi4/m/sl/10 "General Positive-Definite, Natural Parametrization"
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\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "G
eneral Positive-Definite" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdSymm\T1/ptm/m/n/
10 , and
[3035]
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\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con
stant plus power of covariate" \T1/ptm/m/n/10 for
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\T1/zi4/m/sl/10 "Different standard deviations per stratum" \T1/ptm/m/n/10 for 
\T1/zi4/m/sl/10 varIdent\T1/ptm/m/n/10 ,
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[3047]
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[][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1
0 ,
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[][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl
/10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa
ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari
ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/
m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 ,
[3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063]
[3064] [3065]) (./nnet-pkg.tex [3066]
Chapter 26.
[3067]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm
[3068] [3069] [3070] [3071] [3072] [3073] [3074]) (./rpart-pkg.tex
Chapter 27.
[3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085]
[3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096]
[3097] [3098] [3099] [3100] [3101] [3102] [3103]) (./spatial-pkg.tex [3104]
Chapter 28.
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[3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121]
[3122] [3123]) (./survival-pkg.tex [3124]
Chapter 29.
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                   \relax 
l.267 ... Myelogenous Leukemia survival data}{aml}
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                   \relax 
l.267 ... Myelogenous Leukemia survival data}{aml}
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                   \relax 
l.1029 ...erapy for Stage B/C colon cancer}{colon}
                                                  
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[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
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[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m
/n/10 , which is the re-sult of the
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[]\T1/ptm/m/n/10 an ar-ray con-tain-ing the ex-pected num-ber of events (or per
-son years if
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[]\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response
"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d
fbeta"\T1/ptm/m/n/10 ,
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[3203]
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[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the
 form
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\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d
icted sur-vival
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[][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
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[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
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This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux)
(/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex) [1{/usr/sh
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[-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 Chapter 2 [1] [2]
[3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,
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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
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b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux)
(/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex) [1{/usr/sh
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[-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 Chapter 2 [1] [2]
[3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,
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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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Output written on R-FAQ.pdf (51 pages, 378271 bytes).
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex)
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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(./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte
x.map}] [2] [-1] Chapter 1 [1] Chapter 2 [2]
Cross reference values unknown; you must run TeX again. [3] [4] [5] [6]
[7] [8] [9] [10] Chapter 3 [11]
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TIONS[] @textrm to the value
[12] [13]
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[]@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de
vel[] @textrm and @texttt make
[14] [15] [16] Chapter 4 [17] [18] Chapter 5 [19] Chapter 6 [20] [21] [22]
[23]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[24] [25] [26] Chapter 7 [27] [28] [29] Chapter 8 [30] Chapter 9 [31] [32]
[33] Appendix A [34] [35] [36] [37] [38] [39] [40] [41] [42] Appendix B
[43] [44] [45] [46] [47] [48] [49] Appendix C [50] [51] [52] [53] [54] [55]
[56]
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/lib/pkgconfig[] 
[57] [58]
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tents/Home[] 
[59] [60]
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[]@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe
r per-for-mance:
[61] [62] [63] [64] [65] Appendix D [66] [67] [68]
(Function and variable index) [69] (Concept index) [70]
(Environment variable index) [71] [72] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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Output written on R-admin.pdf (75 pages, 448592 bytes).
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
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TIONS[] @textrm to the value
[12] [13]
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[]@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de
vel[] @textrm and @texttt make
[14] [15] [16] Chapter 4 [17] [18] Chapter 5 [19] Chapter 6 [20] [21] [22]
[23]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[24] [25] [26] Chapter 7 [27] [28] [29] Chapter 8 [30] Chapter 9 [31] [32]
[33] Appendix A [34] [35] [36] [37] [38] [39] [40] [41] [42] Appendix B
[43] [44] [45] [46] [47] [48] [49] Appendix C [50] [51] [52] [53] [54] [55]
[56]
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[57] [58]
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tents/Home[] 
[59] [60]
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[]@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe
r per-for-mance:
[61] [62] [63] [64] [65] Appendix D [66] [67] [68]
(Function and variable index) [69] (./R-admin.vrs) (Concept index) [70]
(./R-admin.cps) (Environment variable index) [71] (./R-admin.ens) [72] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
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Output written on R-admin.pdf (77 pages, 495628 bytes).
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(/builddir/build/BUILD/R-3.1.3/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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(./R-admin.aux) (./R-defs.texi
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Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11]
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TIONS[] @textrm to the value
[12] [13]
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[]@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de
vel[] @textrm and @texttt make
[14] [15] [16] Chapter 4 [17] [18] Chapter 5 [19] Chapter 6 [20] [21] [22]
[23]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[24] [25] [26] Chapter 7 [27] [28] [29] Chapter 8 [30] Chapter 9 [31] [32]
[33] Appendix A [34] [35] [36] [37] [38] [39] [40] [41] [42] Appendix B
[43] [44] [45] [46] [47] [48] [49] Appendix C [50] [51] [52] [53] [54] [55]
[56]
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tents/Home[] 
[59] [60]
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[]@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe
r per-for-mance:
[61] [62] [63] [64] [65] Appendix D [66] [67] [68]
(Function and variable index) [69] (./R-admin.vrs) (Concept index) [70]
(./R-admin.cps) (Environment variable index) [71] (./R-admin.ens) [72] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
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) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi
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[3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4
[13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21]
[22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28] (Concept index) [29] [30] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
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(Acknowledgements)
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Chapter 1 [1] [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20]
Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28] (./R-data.vrs [29]) (Concept index) [30]
(./R-data.cps) [31] )
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(Acknowledgements)
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Chapter 1 [1] [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20]
Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28] (./R-data.vrs [29]) (Concept index) [30]
(./R-data.cps) [31] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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x.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc)
(Acknowledgements)
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Chapter 1 [1] [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11]
[12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20]
Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28] (./R-data.vrs [29]) (Concept index) [30]
(./R-data.cps) [31] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
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(Acknowledgements) Chapter 1 [1] [2] [3] [4] [5]
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[22] [23]
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[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
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[80] [81] [82] [83] [84]
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[103] [104] [105] [106]
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[159] (Function and variable index) [160] (./R-exts.vrs [161] [162])
(Concept index) [163] (./R-exts.cps [164]) [165] )
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(Acknowledgements) Chapter 1 [1] [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
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[]@textrm '[] and
[6]
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@textrm or `@texttt Classification/MSC[]@textrm '[] or `@texttt Classification/
MSC-2010[]@textrm '[] (the Math-e-mat-ics Sub-ject
[7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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[24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
[54] Chapter 2 [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
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lename@texttt }[] @textrm and
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[69] [70] [71] Chapter 3 [72] [73] [74] [75] [76] [77] [78] [79] Chapter 4
[80] [81] [82] [83] [84]
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[89]
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[90]
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[91] [92] [93] [94] Chapter 5 [95] [96] [97] [98] [99] [100] [101] [102]
[103] [104] [105] [106]
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" -lpackB[] 
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
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[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127]
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[139]
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sEngine.h[]@textrm , @texttt R_
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-core\R32[] @textrm or
[159] (Function and variable index) [160] (./R-exts.vrs [161] [162])
(Concept index) [163] (./R-exts.cps [164]) [165] )
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(/builddir/build/BUILD/R-3.1.3/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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x.map}] [2] (./R-exts.toc [-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc)
(Acknowledgements) Chapter 1 [1] [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6]
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@textrm or `@texttt Classification/MSC[]@textrm '[] or `@texttt Classification/
MSC-2010[]@textrm '[] (the Math-e-mat-ics Sub-ject
[7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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pp model/*/*.cpp model/*/*/*.cpp)[] 
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a07models.o $(SOURCES:.cpp=.o)[] 
[24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
[54] Chapter 2 [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[67] [68]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[69] [70] [71] Chapter 3 [72] [73] [74] [75] [76] [77] [78] [79] Chapter 4
[80] [81] [82] [83] [84]
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[85] [86] [87] [88]
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[]@textrm Some ver-sions have greatly in-creased com-pi-la-tion times on a few 
files (e.g.
[89]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[90]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[91] [92] [93] [94] Chapter 5 [95] [96] [97] [98] [99] [100] [101] [102]
[103] [104] [105] [106]
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" -lpackB[] 
[107] [108] [109] [110] [111] [112] [113] [114] [115]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
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[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127]
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[128] Chapter 6 [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
[139]
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 R_orderVector(indx, n,
[140] [141] [142] [143] [144] [145]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [146] [147] Chapter 8 [148] [149] [150]
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[151]
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[152] [153] [154] [155] [156] [157]
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tive in-stall and
[158]
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-core\R32[] @textrm or
[159] (Function and variable index) [160] (./R-exts.vrs [161] [162])
(Concept index) [163] (./R-exts.cps [164]) [165] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
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x.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] <./i
mages/hist.pdf> [34] <./images/ecdf.pdf> <./images/QQ.pdf> [35] [36] <./images/
ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45]
[46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] <./image
s/fig11.pdf> [71] <./images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76]
[77] Chapter 14 [78] [79]
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[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93] Appendix E [94] Appendix F [95]
[96] )
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 (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10]
[11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19]
[20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30]
[31] Chapter 8 [32] [33] <./images/hist.pdf> [34] <./images/ecdf.pdf> <./images
/QQ.pdf> [35] [36] <./images/ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10
[41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53]
[54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66]
[67] [68] [69] [70] <./images/fig11.pdf> [71] <./images/fig12.pdf> [72]
[73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79]
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[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93] (./R-intro.vrs [94] [95]) Appendix E
[96] (./R-intro.cps [97]) Appendix F [98] [99] )
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 (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10]
[11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19]
[20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30]
[31] Chapter 8 [32] [33] <./images/hist.pdf> [34] <./images/ecdf.pdf> <./images
/QQ.pdf> [35] [36] <./images/ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10
[41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53]
[54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66]
[67] [68] [69] [70] <./images/fig11.pdf> [71] <./images/fig12.pdf> [72]
[73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79]
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[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93] (./R-intro.vrs [94] [95]) Appendix E
[96] (./R-intro.cps [97]) Appendix F [98] [99] )
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[12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 2 [21] [22] [23] [24]
[25] Chapter 3 [26] [27] Chapter 4 [28] [29] Chapter 5 [30] Chapter 6 [31]
[32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Chapter 7 [42] [43]
Chapter 8 [44] [45]
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Chapter 12 [54] [55] (Function and variable index) [56] (Concept index)
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[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] Chapter 2 [21] [22] [23] [24] [25] Chapter 3 [26] [27]
Chapter 4 [28] [29] Chapter 5 [30] Chapter 6 [31] [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] Chapter 7 [42] [43] Chapter 8 [44] [45]
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[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] Chapter 2 [21] [22] [23] [24] [25] Chapter 3 [26] [27]
Chapter 4 [28] [29] Chapter 5 [30] Chapter 6 [31] [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] Chapter 7 [42] [43] Chapter 8 [44] [45]
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) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi
(/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex))
(./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte
x.map}] [2] [-1] Chapter 1 Chapter 2 [1] [2]
Cross reference values unknown; you must run TeX again.
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 @textbf storage.mode| 
[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4343--4345
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51] (Concept Index)
[52] Appendix A [53] [54] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (57 pages, 327123 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-3.1.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi
(/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex))
(./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte
x.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc)
Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4343--4345
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51] (./R-lang.vrs
[52]) (Concept Index) [53] (./R-lang.cps) Appendix A [54] [55] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (60 pages, 376145 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-3.1.3/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex
Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi
(/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex))
(./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte
x.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc)
Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4343--4345
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51] (./R-lang.vrs
[52]) (Concept Index) [53] (./R-lang.cps) Appendix A [54] [55] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (60 pages, 376143 bytes).
Transcript written on R-lang.log.
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/doc/manual'
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+ cp doc/manual/R-exts.texi doc/manual/R-exts.texi.spot
+ cp doc/manual/R-intro.texi doc/manual/R-intro.texi.spot
+ sed -i 's|@eqn|@math|g' doc/manual/R-exts.texi
+ sed -i 's|@eqn|@math|g' doc/manual/R-intro.texi
+ make info
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/doc'
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/usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
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+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
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+ mv doc/FAQ.utf8 doc/FAQ
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
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+ mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
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+ mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tFYyHf
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386
++ dirname /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386
+ cd R-3.1.3
+ make DESTDIR=/builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386 install install-info
mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R
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installing doc ...
mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/doc/R
mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/man/man1
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make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/unix'
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables  -Wl,-z,relro  -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/pkgconfig
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/main'
mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/bin/exec
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/main'
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mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/lib
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/main'
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make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/modules
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/src/modules/internet'
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mkdir -p -- /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library
installing packages ...
  building HTML index ...
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(Acknowledgements) Chapter 1 [1] [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
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[]@textrm '[] and
[6]
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@textrm or `@texttt Classification/MSC[]@textrm '[] or `@texttt Classification/
MSC-2010[]@textrm '[] (the Math-e-mat-ics Sub-ject
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[22] [23]
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[24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53]
[54] Chapter 2 [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[67] [68]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[69] [70] [71] Chapter 3 [72] [73] [74] [75] [76] [77] [78] [79] Chapter 4
[80] [81] [82] [83] [84]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[85] [86] [87] [88]
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[]@textrm Some ver-sions have greatly in-creased com-pi-la-tion times on a few 
files (e.g.
[89]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[90]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[91] [92] [93] [94] Chapter 5 [95] [96] [97] [98] [99] [100] [101] [102]
[103] [104] [105] [106]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[107] [108] [109] [110] [111] [112] [113] [114] [115]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
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[128] Chapter 6 [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
[139]
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 @texttt <- order(x, y, na.last, decreasing)[] @textrm cor-re-sponds to @texttt
 R_orderVector(indx, n,
[140] [141] [142] [143] [144] [145]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [146] [147] Chapter 8 [148] [149] [150]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[151]
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nst char *);[] 
[152] [153] [154] [155] [156] [157]
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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[158]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
[159] (Function and variable index) [160] (./R-exts.vrs [161] [162])
(Concept index) [163] (./R-exts.cps [164]) [165] )
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/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sha
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Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs,
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x.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
 (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10]
[11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19]
[20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30]
[31] Chapter 8 [32] [33] <./images/hist.pdf> [34] <./images/ecdf.pdf> <./images
/QQ.pdf> [35] [36] <./images/ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10
[41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53]
[54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66]
[67] [68] [69] [70] <./images/fig11.pdf> [71] <./images/fig12.pdf> [72]
[73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79]
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[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93] (./R-intro.vrs [94] [95]) Appendix E
[96] (./R-intro.cps [97]) Appendix F [98] [99] )
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i10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr
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installing R manuals in PDF format ...
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+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/OME.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/Pima.tr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/Rabbit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/Rubber.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/SP500.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/Sitka.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/Sitka89.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/Skye.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/Traffic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/UScereal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/UScrime.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/VA.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/abbey.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/accdeaths.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/addterm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/anorexia.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/anova.negbin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/area.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/bacteria.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/bandwidth.nrd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/bcv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/beav1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/beav2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/biopsy.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/birthwt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/boxcox.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/cabbages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/caith.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/cats.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/cement.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/chem.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/con2tr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/confint.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/contr.sdif.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/coop.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/corresp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/cov.rob.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/cov.trob.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/cpus.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/crabs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/deaths.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/denumerate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/dose.p.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/drivers.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/dropterm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/eagles.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/epil.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/eqscplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/farms.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/fgl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/fitdistr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/forbes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/fractions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/galaxies.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/gamma.dispersion.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/gamma.shape.glm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/gehan.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/genotype.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/geyser.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/gilgais.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/ginv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/glm.convert.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/glm.nb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/glmmPQL.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/hills.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/hist.scott.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/housing.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/huber.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/hubers.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/immer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/isoMDS.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/kde2d.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/lda.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/ldahist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/leuk.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/lm.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/lm.ridge.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/loglm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/loglm1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/logtrans.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/lqs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/mammals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/mca.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/mcycle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/menarche.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/michelson.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/minn38.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/motors.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/muscle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/mvrnorm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/negative.binomial.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/newcomb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/nlschools.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/npk.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/npr1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/oats.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/painters.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/pairs.lda.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/parcoord.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/petrol.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/phones.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/plot.lda.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/plot.mca.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/plot.profile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/polr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/predict.glmmPQL.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/predict.lda.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/predict.lqs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/predict.mca.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/predict.qda.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/profile.glm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/qda.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/quine.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/rational.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/renumerate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/rlm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/rms.curv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/rnegbin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/road.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/rotifer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/sammon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/ships.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/shoes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/shrimp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/shuttle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/snails.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/stdres.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/steam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/stepAIC.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/stormer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/studres.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/summary.loglm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/summary.negbin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/summary.rlm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/survey.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/synth.tr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/theta.md.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/topo.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/truehist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/ucv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/waders.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/whiteside.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/width.SJ.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/write.matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/MASS/html/wtloss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/BunchKaufman-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/CAex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/CHMfactor-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/Cholesky-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/Cholesky.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/CsparseMatrix-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/Diagonal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/Hilbert.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/KNex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/KhatriRao.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/LU-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/Matrix-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/Matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
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+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
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+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/pMatrix-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/printSpMatrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/qr-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/rankMatrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/rcond.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/rep2abI.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/replValue-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/rleDiff-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/rsparsematrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/solve-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/spMatrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/sparse.model.matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/sparseLU-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/sparseMatrix-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/sparseMatrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/sparseQR-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/sparseVector-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/sparseVector.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/symmetricMatrix-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/symmpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/triangularMatrix-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/unpack.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/unused-classes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/Matrix/html/updown.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Arithmetic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/AsIs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Bessel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/CallExternal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Colon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Comparison.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Constants.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Cstack_info.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/DateTimeClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Dates.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Deprecated.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Encoding.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/EnvVar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Extract.data.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Extract.factor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Extract.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Extremes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Foreign-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Foreign.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Hyperbolic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ISOdatetime.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/InternalMethods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/La_version.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Last.value.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Log.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Logic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/LongVectors.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/MathFun.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Memory-limits.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Memory.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/NA.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/NULL.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/NumericConstants.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Ops.Date.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Paren.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Platform.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Primitive.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Quotes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Random-user.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Random.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/RdUtils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Recall.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Reserved.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Rhome.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Round.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Signals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Special.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Startup.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Syntax.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.getenv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.getpid.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.glob.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.info.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.localeconv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.readlink.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.setFileTime.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.setenv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.sleep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.time.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Sys.which.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Trig.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/UseMethod.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Vectorize.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/Version.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/abbreviate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/agrep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/all.equal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/all.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/allnames.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/any.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/aperm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/append.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/apply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/args.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/array.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/as.Date.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/as.POSIXlt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/as.data.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/as.environment.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/as.function.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/assign.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/assignOps.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/attach.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/attr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/attributes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/autoload.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/backsolve.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/base-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/base-deprecated.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/base-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/base-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/basename.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/bincode.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/bindenv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/bitwise.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/body.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/bquote.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/browser.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/browserText.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/builtins.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/by.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/c.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/call.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/callCC.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/capabilities.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/cat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/cbind.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/char.expand.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/character.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/charmatch.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/chartr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/chol.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/chol2inv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/col.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/colSums.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/colnames.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/commandArgs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/comment.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/complex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/conditions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/conflicts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/connections.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/contributors.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/copyright.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/crossprod.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/cumsum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/cut.POSIXt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/cut.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/data.class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/data.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/data.matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dataframeHelpers.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/date.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dcf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/debug.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/delayedAssign.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/deparse.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/deparseOpts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/det.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/detach.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dev.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/diag.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/diff.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/difftime.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dimnames.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/do.call.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dontCheck.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/double.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dput.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/drop.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/droplevels.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dump.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/duplicated.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/dynload.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/eapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/eigen.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/encodeString.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/environment.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/eval.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/exists.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/expand.grid.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/expression.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/factor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/file.access.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/file.choose.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/file.info.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/file.path.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/file.show.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/files.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/files2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/find.package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/findInterval.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/force.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/formals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/format.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/format.info.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/format.pval.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/formatDL.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/formatc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/function.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/funprog.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/gc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/gc.time.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/gctorture.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/get.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/getCallingDLL.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/getDLLRegisteredRoutines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/getLoadedDLLs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/getNativeSymbolInfo.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/gettext.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/getwd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/gl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/grep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/grepRaw.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/groupGeneric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/gzcon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/hexmode.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/iconv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/icuSetCollate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/identical.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/identity.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ifelse.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/integer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/interaction.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/interactive.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/invisible.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/is.finite.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/is.function.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/is.language.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/is.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/is.recursive.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/is.single.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/is.unsorted.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/isR.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/isS4.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/isSymmetric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/jitter.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/kappa.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/kronecker.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/l10n_info.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/labels.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/lapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/lazyload.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/length.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/levels.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/libPaths.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/library.dynam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/library.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/license.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/list.files.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/list.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/list2env.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/load.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/locales.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/logical.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/lower.tri.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/make.names.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/make.unique.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/mapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/margin.table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/mat.or.vec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/match.arg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/match.call.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/match.fun.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/match.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/matmult.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/maxCol.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/mean.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/memCompress.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/memory.profile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/merge.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/message.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/missing.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/mode.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/name.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/names.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/nargs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/nchar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/nlevels.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/noquote.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/norm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/normalizePath.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/notyet.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/nrow.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ns-dblcolon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ns-hooks.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ns-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ns-load.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ns-reflect.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/ns-topenv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/numeric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/numeric_version.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/octmode.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/on.exit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/options.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/order.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/outer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/parse.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/paste.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/path.expand.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/pcre_config.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/pmatch.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/polyroot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/pos.to.env.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/pretty.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/print.dataframe.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/print.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/print.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/prmatrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/proc.time.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/prod.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/prop.table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/pushBack.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/qr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/qraux.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/quit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/range.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rank.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/raw.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rawConnection.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rawConversion.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/readBin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/readChar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/readLines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/readRDS.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/readRenviron.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/readline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/reg.finalizer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/regex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/regmatches.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/replace.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rev.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/round.POSIXt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/row.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/row.names.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/rowsum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sQuote.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sample.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/save.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/scale.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/scan.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/search.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/seek.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/seq.Date.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/seq.POSIXt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/seq.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sequence.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/serialize.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/setTimeLimit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sets.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/shQuote.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/showConnections.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sign.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sink.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/slice.index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/slotOp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/socketSelect.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/solve.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sort.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/source.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/split.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sprintf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/srcfile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/standardGeneric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/stop.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/stopifnot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/strptime.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/strsplit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/strtoi.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/strtrim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/structure.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/strwrap.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/subset.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/substitute.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/substr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/summary.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/svd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sweep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/switch.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sys.parent.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/sys.source.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/system.file.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/system.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/system.time.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/system2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/t.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/tabulate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/tapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/taskCallback.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/taskCallbackManager.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/taskCallbackNames.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/tempfile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/textconnections.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/tilde.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/timezones.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/toString.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/trace.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/traceback.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/tracemem.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/transform.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/try.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/typeof.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/unique.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/unlink.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/unlist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/unname.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/userhooks.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/utf8Conversion.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/vector.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/warning.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/warnings.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/weekday.POSIXt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/which.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/which.min.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/with.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/withVisible.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/write.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/writeLines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/xtfrm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/zMachine.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/zScript.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/zapsmall.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/zpackages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/base/html/zutils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/EEF.profile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/Imp.Estimates.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/abc.ci.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/acme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/aids.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/aircondit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/amis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/aml.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/beaver.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/bigcity.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/boot-practicals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/boot.array.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/boot.ci.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/boot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/brambles.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/breslow.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/calcium.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/cane.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/capability.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/catsM.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/cav.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/cd4.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/cd4.nested.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/censboot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/channing.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/claridge.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/cloth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/co.transfer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/coal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/corr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/cum3.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/cv.glm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/darwin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/dogs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/downs.bc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/ducks.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/empinf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/envelope.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/exp.tilt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/fir.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/freq.array.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/frets.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/glm.diag.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/glm.diag.plots.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/gravity.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/hirose.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/imp.weights.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/inv.logit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/islay.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/jack.after.boot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/k3.linear.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/linear.approx.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/lines.saddle.distn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/logit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/manaus.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/melanoma.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/motor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/neuro.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/nitrofen.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/nodal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/norm.ci.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/nuclear.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/paulsen.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/plot.boot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/poisons.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/polar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/print.boot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/print.bootci.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/print.saddle.distn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/print.simplex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/remission.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/saddle.distn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/saddle.distn.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/saddle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/salinity.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/simplex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/simplex.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/smooth.f.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/sunspot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/survival.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/tau.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/tilt.boot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/tsboot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/tuna.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/urine.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/var.linear.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/boot/html/wool.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/SOM.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/batchSOM.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/condense.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/knn.cv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/knn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/knn1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/lvq1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/lvq2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/lvq3.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/lvqinit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/lvqtest.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/multiedit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/olvq1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/reduce.nn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/class/html/somgrid.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/agnes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/agnes.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/agriculture.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/animals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/bannerplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/chorSub.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/clara.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/clara.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/clusGap.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/clusplot.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/clusplot.partition.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/cluster-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/coef.hclust.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/daisy.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/diana.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/dissimilarity.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/ellipsoidhull.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/fanny.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/fanny.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/flower.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/lower.to.upper.tri.inds.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/mona.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/mona.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/pam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/pam.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/partition.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/plantTraits.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/plot.agnes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/plot.diana.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/plot.mona.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/plot.partition.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/pltree.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/pluton.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/predict.ellipsoid.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/print.agnes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/print.clara.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/print.diana.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/print.dissimilarity.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/print.fanny.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/print.mona.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/print.pam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/ruspini.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/silhouette.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/sizeDiss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/summary.agnes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/summary.clara.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/summary.diana.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/summary.mona.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/summary.pam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/twins.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/volume.ellipsoid.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/votes.repub.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/cluster/html/xclara.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/codetools/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/codetools/html/checkUsage.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/codetools/html/codetools.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/codetools/html/findGlobals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/codetools/html/showTree.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/compiler/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/compiler/html/compile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/AirPassengers.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/BJsales.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/BOD.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/ChickWeight.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/DNase.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/EuStockMarkets.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Formaldehyde.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/HairEyeColor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Harman23.cor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Harman74.cor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Indometh.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/InsectSprays.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/JohnsonJohnson.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/LakeHuron.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/LifeCycleSavings.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Loblolly.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Nile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Orange.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/OrchardSprays.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/PlantGrowth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Puromycin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Theoph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/Titanic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/ToothGrowth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/UCBAdmissions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/UKDriverDeaths.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/UKLungDeaths.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/UKgas.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/USAccDeaths.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/USArrests.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/USJudgeRatings.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/USPersonalExpenditure.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/VADeaths.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/WWWusage.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/WorldPhones.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/ability.cov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/airmiles.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/airquality.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/anscombe.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/attenu.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/attitude.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/austres.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/beavers.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/cars.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/chickwts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/co2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/crimtab.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/datasets-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/discoveries.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/esoph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/euro.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/eurodist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/faithful.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/freeny.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/infert.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/iris.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/islands.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/lh.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/longley.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/lynx.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/morley.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/mtcars.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/nhtemp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/nottem.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/npk.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/occupationalStatus.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/precip.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/presidents.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/pressure.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/quakes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/randu.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/rivers.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/rock.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/sleep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/stackloss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/state.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/sunspot.month.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/sunspot.year.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/sunspots.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/swiss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/treering.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/trees.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/uspop.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/volcano.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/warpbreaks.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/women.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/datasets/html/zCO2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/lookup.xport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.S.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.arff.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.dbf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.dta.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.epiinfo.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.mtp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.octave.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.spss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.ssd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.systat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/read.xport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/write.arff.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/write.dbf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/write.dta.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/foreign/html/write.foreign.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/Devices.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/Hershey.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/Japanese.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/Type1Font.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/adjustcolor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/as.graphicsAnnot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/as.raster.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/axisTicks.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/boxplot.stats.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/cairo.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/check.options.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/chull.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/cm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/col2rgb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/colorRamp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/colors.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/contourLines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/convertColor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/densCols.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev.capabilities.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev.capture.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev.flush.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev.interactive.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev.size.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/dev2bitmap.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/devAskNewPage.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/embedFonts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/extendrange.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/getGraphicsEvent.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/grDevices-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/gray.colors.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/gray.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/hcl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/hsv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/make.rgb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/n2mfrow.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/nclass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/palette.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/palettes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/pdf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/pdf.options.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/pictex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/plotmath.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/png.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/postscript.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/postscriptFonts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/pretty.Date.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/ps.options.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/quartz.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/quartzFonts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/recordGraphics.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/recordplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/rgb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/rgb2hsv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/savePlot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/trans3d.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/x11.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/x11Fonts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/xfig.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/xy.coords.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/xyTable.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grDevices/html/xyz.coords.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/abline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/arrows.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/assocplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/axTicks.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/axis.POSIXct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/axis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/barplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/box.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/boxplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/boxplot.matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/bxp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/cdplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/clip.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/contour.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/convertXY.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/coplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/curve.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/dotchart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/filled.contour.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/fourfoldplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/graphics-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/graphics-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/grid.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/hist.POSIXt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/hist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/identify.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/image.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/layout.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/legend.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/lines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/locator.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/matplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/mosaicplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/mtext.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/pairs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/panel.smooth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/par.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/persp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/pie.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.dataframe.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.design.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.factor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.formula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.window.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plot.xy.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/plothistogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/points.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/polygon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/polypath.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/rasterImage.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/rect.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/rug.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/screen.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/segments.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/smoothScatter.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/spineplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/stars.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/stem.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/stripchart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/strwidth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/sunflowerplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/symbols.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/text.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/title.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/units.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/xspline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/graphics/html/zAxis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/Grid.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/absolute.size.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/arrow.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/calcStringMetric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/current.viewport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/dataViewport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/depth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/drawDetails.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/editDetails.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/explode.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/gEdit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/gPath.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/getNames.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/gpar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.DLapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.add.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.bezier.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.cap.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.circle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.clip.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.convert.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.copy.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.curve.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.delay.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.display.list.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.draw.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.edit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.force.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.function.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.get.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.grab.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.grep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.grill.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.grob.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.layout.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.lines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.locator.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.ls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.move.to.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.newpage.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.null.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.pack.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.path.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.place.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.plot.and.legend.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.points.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.polygon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.pretty.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.raster.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.record.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.rect.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.refresh.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.remove.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.reorder.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.roundrect.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.segments.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.set.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.show.layout.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.show.viewport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.text.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.xaxis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.xspline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grid.yaxis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grobName.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grobWidth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/grobX.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/legendGrob.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/makeContent.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/plotViewport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/resolveRasterSize.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/showGrob.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/showViewport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/stringWidth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/unit.c.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/unit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/unit.length.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/unit.pmin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/unit.rep.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/valid.just.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/validDetails.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/viewport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/viewports.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/vpPath.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/widthDetails.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/xDetails.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/grid/html/xsplinePoints.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/Lattice.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/Rows.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/axis.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/banking.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/barchart.table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/barley.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/cloud.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/draw.colorkey.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/draw.key.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/environmental.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/ethanol.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/histogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/interaction.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/lattice.options.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/latticeParseFormula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/level.colors.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/levelplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/llines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/lset.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/make.groups.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/melanoma.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/oneway.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/packet.panel.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.axis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.barchart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.bwplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.cloud.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.densityplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.dotplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.functions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.histogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.levelplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.loess.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.number.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.pairs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.parallel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.qqmath.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.qqmathline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.smoothScatter.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.spline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.stripplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.superpose.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.violin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/panel.xyplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/prepanel.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/prepanel.functions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/print.trellis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/qq.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/qqmath.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/rfs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/shingles.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/simpleKey.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/simpleTheme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/singer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/splom.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/strip.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/tmd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/trellis.device.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/trellis.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/trellis.par.get.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/update.trellis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/utilities.3d.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/xyplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/lattice/html/xyplot.ts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/BasicClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/Classes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/Documentation.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/EmptyMethodsList-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/EnvironmentClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/GenericFunctions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/LanguageClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/LinearMethodsList-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/MethodDefinition-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/MethodSupport.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/MethodWithNext-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/Methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/MethodsList-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/MethodsList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/NextMethod.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/ObjectsWithPackage-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/RClassUtils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/RMethodUtils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/S3Part.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/S4groupGeneric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/SClassExtension-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/StructureClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/TraceClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/as.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/callGeneric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/canCoerce.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/cbind2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/className.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/classRepresentation-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/classesToAM.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/dotsMethods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/evalSource.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/findClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/findMethods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/fixPrevious.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/genericFunction-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/getClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/getMethod.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/getPackageName.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/hasArg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/implicitGeneric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/inheritedSlotNames.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/initialize-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/is.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/isSealedMethod.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/languageEl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/localRefClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/method.skeleton.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/methodUtilities.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/methods-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/methods-deprecated.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/methods-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/new.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/nonStructure-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/promptClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/promptMethods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/refClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/representation.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/selectSuperClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/setClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/setClassUnion.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/setGeneric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/setLoadActions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/setMethod.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/setOldClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/setSClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/show.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/showMethods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/signature-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/slot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/stdRefClass.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/substituteDirect.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/testInheritedMethods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/validObject.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/methods/html/zBasicFunsList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/Beta.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/Predict.matrix.cr.smooth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/Predict.matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/Predict.matrix.soap.film.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/Rrank.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/Tweedie.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/anova.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/bam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/bam.update.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/cSplineDes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/choose.k.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/columb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/concurvity.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/exclude.too.far.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/extract.lme.cov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/family.mgcv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/fix.family.link.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/fixDependence.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/formXtViX.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/formula.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/fs.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/full.score.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.check.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.convergence.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.fit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.fit3.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.models.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.outer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.scale.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.selection.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.side.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam.vcomp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gam2objective.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gamObject.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gamSim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gamm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/gaulss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/get.var.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/in.out.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/inSide.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/influence.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/initial.sp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/interpret.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/jagam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/ldTweedie.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/linear.functional.terms.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/logLik.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/ls.size.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/magic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/magic.post.proc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/mgcv-FAQ.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/mgcv-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/mgcv-parallel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/model.matrix.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/mono.con.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/mroot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/mvn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/negbin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/new.name.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/notExp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/notExp2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/null.space.dimension.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/ocat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/pcls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/pdIdnot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/pdTens.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/pen.edf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/place.knots.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/plot.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/polys.plot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/predict.bam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/predict.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/print.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/qq.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/rTweedie.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/random.effects.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/residuals.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/rig.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/s.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/scat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/slanczos.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.ds.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.fs.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.mrf.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.ps.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.re.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.so.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.sos.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.t2.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.tensor.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.construct.tp.smooth.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smooth.terms.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/smoothCon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/sp.vcov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/spasm.construct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/step.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/summary.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/t2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/te.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/tensor.prod.model.matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/uniquecombs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/vcov.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/vis.gam.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/ziP.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/html/ziplss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/ACF.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/ACF.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/ACF.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Alfalfa.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Assay.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/BodyWeight.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Cefamandole.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Coef.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Covariate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Covariate.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Dialyzer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Dim.corSpatial.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Dim.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Dim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Dim.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Earthquake.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Extract.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Fatigue.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Gasoline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Glucose.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Glucose2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Gun.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/IGF.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Initialize.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Initialize.glsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Initialize.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Initialize.lmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Initialize.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Initialize.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/LDEsysMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Machines.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/MathAchSchool.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/MathAchieve.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Matrix.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Matrix.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Meat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Milk.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Muscle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Names.formula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Names.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Names.pdBlocked.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Names.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Names.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Nitrendipene.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Oats.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Orthodont.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Ovary.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Oxboys.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Oxide.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/PBG.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Phenobarb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Pixel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Quinidine.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Rail.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/RatPupWeight.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Relaxin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Remifentanil.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Soybean.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Spruce.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Tetracycline1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Tetracycline2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/VarCorr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.corExp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.corGaus.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.corLin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.corRatio.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.corSpatial.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.corSpher.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.default.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Variogram.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Wafer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Wheat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/Wheat2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/allCoef.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/anova.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/anova.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/as.matrix.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/as.matrix.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/as.matrix.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/asOneFormula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/asTable.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/augPred.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/balancedGrouped.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/bdf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.gnls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.modelStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/coef.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/collapse.groupedData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/collapse.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/compareFits.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/comparePred.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corAR1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corARMA.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corCAR1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corCompSymm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corExp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corFactor.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corFactor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corGaus.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corLin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corMatrix.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corMatrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corMatrix.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corMatrix.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corNatural.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corRatio.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corSpatial.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corSpher.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/corSymm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/ergoStool.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fdHess.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fitted.glsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fitted.gnlsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fitted.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fitted.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fitted.lmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fitted.nlmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fixed.effects.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/fixef.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/formula.pdBlocked.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/formula.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/formula.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getCovariate.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getCovariate.data.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getCovariate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getCovariate.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getCovariateFormula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getData.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getData.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getData.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroups.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroups.data.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroups.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroups.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroups.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroups.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroups.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getGroupsFormula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getResponse.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getResponseFormula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/getVarCov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gls-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/glsControl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/glsObject.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/glsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gnls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gnlsControl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gnlsObject.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gnlsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/groupedData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/gsummary.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/intervals.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/intervals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/intervals.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/intervals.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/isBalanced.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/isInitialized.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lmList.groupedData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lme.groupedData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lme.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lmeControl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lmeObject.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/lmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logDet.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logDet.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logDet.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logDet.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.glsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.gnls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.gnlsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.lmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/logLik.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/model.matrix.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/needUpdate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/needUpdate.modelStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/nlme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/nlme.nlsList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/nlmeControl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/nlmeObject.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/nlmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/nlsList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/nlsList.selfStart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pairs.compareFits.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pairs.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pairs.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdBlocked.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdCompSymm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdConstruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdConstruct.pdBlocked.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdDiag.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdFactor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdFactor.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdIdent.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdLogChol.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdMatrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdMatrix.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdNatural.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pdSymm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/phenoModel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.ACF.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.Variogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.augPred.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.compareFits.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.intervals.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.nffGroupedData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.nfnGroupedData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.nmGroupedData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.ranef.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/plot.ranef.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/pooledSD.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/predict.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/predict.gnls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/predict.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/predict.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/predict.nlme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/print.summary.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/print.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/qqnorm.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/qqnorm.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/quinModel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/random.effects.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/ranef.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/ranef.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/recalc.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/recalc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/recalc.modelStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/recalc.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/recalc.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/residuals.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/residuals.glsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/residuals.gnlsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/residuals.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/residuals.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/residuals.lmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/residuals.nlmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/simulate.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/solve.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/solve.reStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/splitFormula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.corStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.lmList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.lme.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.modelStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.nlsList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.pdMat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/summary.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/update.modelStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/update.varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varComb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varConstPower.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varExp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varFixed.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varFunc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varIdent.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varPower.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varWeights.glsStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varWeights.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nlme/html/varWeights.lmeStruct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nnet/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nnet/html/class.ind.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nnet/html/multinom.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nnet/html/nnet.Hess.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nnet/html/nnet.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nnet/html/predict.nnet.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/nnet/html/which.is.max.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/RngStream.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/children.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/clusterApply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/detectCores.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/makeCluster.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/mcaffinity.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/mcfork.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/mclapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/mcparallel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/parallel-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/pvec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/parallel/html/splitIndices.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/car.test.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/car90.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/cu.summary.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/kyphosis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/labels.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/meanvar.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/na.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/path.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/plot.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/plotcp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/post.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/predict.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/print.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/printcp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/prune.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/residuals.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/rpart-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/rpart.control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/rpart.exp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/rpart.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/rsq.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/snip.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/solder.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/stagec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/summary.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/text.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/rpart/html/xpred.rpart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/Kaver.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/Kenvl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/Kfn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/Psim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/SSI.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/Strauss.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/anova.trls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/correlogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/expcov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/ppgetregion.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/ppinit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/pplik.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/ppregion.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/predict.trls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/prmat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/semat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/surf.gls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/surf.ls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/trls.influence.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/trmat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/spatial/html/variogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/asVector.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/backSpline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/bs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/interpSpline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/ns.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/periodicSpline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/polySpline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/predict.bSpline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/predict.bs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/splineDesign.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/splineKnots.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/splineOrder.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/splines-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/splines/html/xyVector.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/AIC.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ARMAacf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ARMAtoMA.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Beta.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Binomial.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Cauchy.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Chisquare.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Distributions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Exponential.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Fdist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/GammaDist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Geometric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/HoltWinters.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Hypergeometric.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/IQR.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/KalmanLike.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Logistic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Lognormal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Multinom.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/NLSstAsymptotic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/NLSstClosestX.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/NLSstLfAsymptote.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/NLSstRtAsymptote.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/NegBinomial.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Normal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Poisson.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSD.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSasymp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSasympOff.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSasympOrig.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSbiexp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSfol.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSfpl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSgompertz.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSlogis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSmicmen.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SSweibull.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/SignRank.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/StructTS.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/TDist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Tukey.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/TukeyHSD.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Uniform.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Weibull.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/Wilcoxon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/acf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/acf2AR.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/add1.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/addmargins.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/aggregate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/alias.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/anova.glm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/anova.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/anova.lm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/anova.mlm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ansari.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/aov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/approxfun.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ar.ols.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/arima.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/arima.sim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/arima0.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/as.hclust.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/asOneSidedFormula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ave.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/bandwidth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/bartlett.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/binom.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/biplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/biplot.princomp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/birthday.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/box.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cancor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/case.names.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/checkMFClasses.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/chisq.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cmdscale.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/coef.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/complete.cases.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/confint.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/constrOptim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/contrast.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/contrasts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/convolve.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cophenetic.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cor.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cov.wt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cpgram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/cutree.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/decompose.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/delete.response.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/dendrapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/dendrogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/density.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/deriv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/deviance.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/df.residual.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/diffinv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/dist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/dummy.coef.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ecdf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/eff.aovlist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/effects.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/embed.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/expand.model.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/extractAIC.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/factanal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/factor.scope.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/family.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/fft.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/filter.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/fisher.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/fitted.values.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/fivenum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/fligner.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/formula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/formula.nls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/friedman.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ftable.formula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ftable.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/getInitial.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/glm.control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/glm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/glm.summaries.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/hclust.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/heatmap.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/identify.hclust.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/influence.measures.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/integrate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/interaction.plot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/is.empty.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/isoreg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/kernapply.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/kernel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/kmeans.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/kruskal.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ks.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ksmooth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lag.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lag.plot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/line.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/listof.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lm.influence.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lm.summaries.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lmfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/loadings.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/loess.control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/loess.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/logLik.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/loglin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lowess.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ls.diag.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ls.print.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/lsfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/mad.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/mahalanobis.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/make.link.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/makepredictcall.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/manova.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/mantelhaen.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/mauchly.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/mcnemar.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/median.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/medpolish.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/model.extract.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/model.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/model.matrix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/model.tables.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/monthplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/mood.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/na.action.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/na.contiguous.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/na.fail.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/nafns.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/naprint.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/nextn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/nlm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/nlminb.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/nls.control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/nls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/nobs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/numericDeriv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/offset.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/oneway.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/optim.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/optimize.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/order.dendrogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/p.adjust.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/pairwise.prop.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/pairwise.t.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/pairwise.table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/pairwise.wilcox.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.HoltWinters.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.acf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.density.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.isoreg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.lm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.ppr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.profile.nls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.spec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.stepfun.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/plot.ts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/poisson.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/poly.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/power.anova.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/power.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/power.prop.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/power.t.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/pp.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ppoints.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ppr.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/prcomp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.HoltWinters.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.arima.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.glm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.lm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.loess.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.nls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/predict.smooth.spline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/preplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/princomp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/print.power.htest.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/print.ts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/printCoefmat.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/profile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/profile.nls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/proj.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/prop.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/prop.trend.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/qqnorm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/quade.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/quantile.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/r2dtable.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/rWishart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/read.ftable.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/rect.hclust.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/relevel.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/reorder.dendrogram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/reorder.factor.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/replications.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/reshape.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/residuals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/runmed.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/scatter.smooth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/screeplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/sd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/se.contrast.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/selfStart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/setNames.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/shapiro.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/simulate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/smooth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/smooth.spline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/smoothEnds.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/sortedXyData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/spec.ar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/spec.pgram.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/spec.taper.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/spectrum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/splinefun.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/start.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/stat.anova.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/stats-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/stats-deprecated.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/stats-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/step.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/stepfun.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/stl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/stlmethods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/summary.aov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/summary.glm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/summary.lm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/summary.manova.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/summary.nls.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/summary.princomp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/supsmu.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/symnum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/t.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/termplot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/terms.formula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/terms.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/terms.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/time.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/toeplitz.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ts-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ts.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ts.plot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/ts.union.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/tsSmooth.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/tsdiag.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/tsp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/uniroot.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/update.formula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/update.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/var.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/varimax.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/vcov.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/weighted.mean.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/weighted.residuals.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/weights.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/wilcox.test.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/window.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/xtabs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats/html/zC.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/coef-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/confint-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/logLik-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/mle-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/mle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/plot-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/profile-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/profile.mle-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/show-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/stats4-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/summary-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/summary.mle-class.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/update-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/stats4/html/vcov-methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/Surv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/aareg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/agreg.fit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/aml.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/anova.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/attrassign.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/basehaz.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/bladder.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/cch.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/cgd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/cgd0.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/clogit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/cluster.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/colon.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/cox.zph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/coxph.control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/coxph.detail.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/coxph.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/coxph.wtest.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/dsurvreg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/flchain.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/frailty.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/heart.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/is.ratetable.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/kidney.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/lines.survfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/logan.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/lung.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/mgus.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/mgus2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/model.frame.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/model.matrix.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/neardate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/nwtco.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/ovarian.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/pbc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/pbcseq.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/plot.aareg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/plot.cox.zph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/plot.survfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/predict.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/predict.survreg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/print.aareg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/print.summary.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/print.summary.survexp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/print.summary.survfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/print.survfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/pspline.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/pyears.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/quantile.survfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/ratetable.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/ratetableDate.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/rats.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/rats2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/residuals.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/residuals.survreg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/ridge.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/stanford2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/strata.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/summary.aareg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/summary.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/summary.survexp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/summary.survfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survConcordance.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survSplit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survdiff.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survexp.fit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survexp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survexp.us.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survfit.coxph.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survfit.formula.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survfit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survfit.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survfitcoxph.fit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survival-internal.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survobrien.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survreg.control.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survreg.distributions.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survreg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survreg.object.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/survregDtest.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/tcut.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/tmerge.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/tobin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/transplant.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/untangle.specials.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/uspop2.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/survival/html/veteran.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/TclInterface.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/TkCommands.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/TkWidgetcmds.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/TkWidgets.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tclServiceMode.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tcltk-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tcltk-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tkProgressBar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tkStartGUI.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tk_choose.dir.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tk_choose.files.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tk_messageBox.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tk_select.list.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tcltk/html/tkpager.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/HTMLheader.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/HTMLlinks.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/QC.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/Rd2HTML.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/Rd2txt_options.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/RdTextFilter.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/Rdiff.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/Rdindex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/Rdutils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/SweaveTeXFilter.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/add_datalist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/assertCondition.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/bibstyle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/buildVignette.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/buildVignettes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/charsets.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/checkFF.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/checkMD5sums.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/checkPoFiles.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/checkRd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/checkRdaFiles.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/checkTnF.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/checkVignettes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/check_packages_in_dir.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/codoc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/compactPDF.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/delimMatch.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/dependsOnPkgs.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/encoded.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/fileutils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/find_gs_cmd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/getDepList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/getVignetteInfo.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/installFoundDepends.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/makeLazyLoading.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/make_translations_pkg.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/md5sum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/package.dependencies.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/package_dependencies.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/parseLatex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/parse_Rd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/print.via.format.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/pskill.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/psnice.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/read.00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/showNonASCII.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/startDynamicHelp.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/testInstalledPackage.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/texi2dvi.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/toHTML.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/toRd.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/tools-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/tools-deprecated.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/tools-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/undoc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/update_pkg_po.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/vignetteDepends.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/vignetteEngine.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/writePACKAGES.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/tools/html/xgettext.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/00Index.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/BATCH.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/COMPILE.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/INSTALL.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/LINK.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/PkgUtils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/Question.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/REMOVE.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/RHOME.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/RShowDoc.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/RSiteSearch.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/Rprof.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/Rprofmem.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/Rscript.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/Rtangle.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/RweaveLatex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/SHLIB.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/Sweave.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/SweaveSyntConv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/SweaveUtils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/URLencode.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/View.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/adist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/alarm.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/apropos.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/aregexec.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/aspell-utils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/aspell.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/available.packages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/bibentry.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/browseEnv.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/browseURL.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/browseVignettes.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/bug.report.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/capture.output.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/changedFiles.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/chooseBioCmirror.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/chooseCRANmirror.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/citEntry.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/citation.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/cite.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/close.socket.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/combn.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/compareVersion.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/contrib.url.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/count.fields.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/create.post.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/data.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/dataentry.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/debugger.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/demo.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/download.file.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/download.packages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/edit.data.frame.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/edit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/example.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/file.edit.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/filetest.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/findLineNum.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/fix.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/flush.console.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/format.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/getAnywhere.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/getFromNamespace.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/getParseData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/getS3method.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/glob2rx.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/globalVariables.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/head.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/help.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/help.request.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/help.search.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/help.start.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/install.packages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/installed.packages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/localeToCharset.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/ls_str.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/maintainer.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/make.packages.html.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/make.socket.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/memory.size.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/menu.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/methods.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/mirrorAdmin.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/modifyList.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/news.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/nsl.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/object.size.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/package.skeleton.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/packageDescription.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/packageName.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/packageStatus.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/page.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/person.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/process.events.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/prompt.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/promptData.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/promptPackage.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/rcompgen.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/read.DIF.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/read.fortran.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/read.fwf.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/read.socket.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/read.table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/recover.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/relist.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/remove.packages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/removeSource.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/roman.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/rtags.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/savehistory.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/select.list.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/sessionInfo.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/setRepositories.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/sourceutils.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/stack.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/str.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/summaryRprof.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/tar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/toLatex.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/txtProgressBar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/type.convert.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/untar.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/unzip.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/update.packages.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/url.show.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/utils-defunct.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/utils-deprecated.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/utils-package.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/vignette.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/write.table.html
+ for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html'
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/utils/html/zip.html
+ chmod +x /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/R/sh/echo.sh
+ chmod -x /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/library/mgcv/CITATION /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/doc/R/CAPABILITIES
+ pushd /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R
~/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R ~/build/BUILD/R-3.1.3
+ ln -s ../../include/R include
+ popd
~/build/BUILD/R-3.1.3
+ mkdir -p /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/texmf/tex/latex
+ pushd /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/texmf/tex/latex
~/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/texmf/tex/latex ~/build/BUILD/R-3.1.3
+ ln -s ../../../R/texmf/tex/latex R
+ popd
~/build/BUILD/R-3.1.3
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/R-3.1.3
extracting debug info from /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/libRmath.so
extracting debug info from /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/lib/R/lib/libR.so
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extracting debug info from /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/bin/Rscript
*** WARNING: identical binaries are copied, not linked:
        /usr/bin/Rscript
   and  /usr/lib/R/bin/Rscript
/usr/lib/rpm/sepdebugcrcfix: Updated 34 CRC32s, 0 CRC32s did match.
cpio: /tmp/Rtmp4byiWV/R.INSTALL205f3d40805/mgcv/src: Cannot stat: No such file or directory
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cpio: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/AMD/Source: Cannot stat: No such file or directory
cpio: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/CHOLMOD/Lib: Cannot stat: No such file or directory
cpio: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/COLAMD/Source: Cannot stat: No such file or directory
cpio: /tmp/RtmpAwpKcs/R.INSTALL1a943179e592/Matrix/src/SuiteSparse_config: Cannot stat: No such file or directory
cpio: /tmp/RtmpCVKnEb/R.INSTALL1edc58d87d18/cluster/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpNG0tjD/R.INSTALL1e2b5ba02002/survival/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpREWd2t/R.INSTALL1f9b83034c3/rpart/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpYhVda2/R.INSTALL20275168d8a9/nnet/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpeA6F5X/R.INSTALL200e2fa014c1/class/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpiXeNuP/R.INSTALL19ae3020a3c2/MASS/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpkpZ4tp/R.INSTALL1f614a7c44a7/KernSmooth/src: Cannot stat: No such file or directory
cpio: /tmp/RtmplXqPCN/R.INSTALL1d61dae5281/nlme/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpmxzFYT/R.INSTALL20406a74c3b4/spatial/src: Cannot stat: No such file or directory
cpio: /tmp/RtmpsUs2kk/R.INSTALL19df36e38716/lattice/src: Cannot stat: No such file or directory
17578 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5KSKzB
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-3.1.3
+ ulimit -s 16384
+ make check
make[1]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests/Examples'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running strict specific tests
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'array-subset.R' ... OK
  comparing 'array-subset.Rout' to './array-subset.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
running sloppy specific tests
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ... OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running regression tests ...
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-examples1.R' ... OK
running code in 'reg-examples2.R' ... OK
running code in 'reg-packages.R' ... OK
running code in 'reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
running code in 'reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
running code in 'reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK
running code in 'reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK
running code in 'reg-BLAS.R' ... OK
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running code in 'reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK
running code in 'reg-examples3.R' ... OK
  comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in 'reg-plot-latin1.R' ... FAILED
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running tests of Internet and socket functions
  expect some differences
make[3]: Entering directory '/builddir/build/BUILD/R-3.1.3/tests'
running code in 'internet.R' ... OK
  comparing 'internet.Rout' to './internet.Rout.save' ...14,16c14,352
< Warning message:
< In nsl("cran.r-project.org") :
<   nsl() was unable to resolve host 'cran.r-project.org'
---
> > 
> > # test do_download.
> > nrow(available.packages(contrib.url("http://cran.r-project.org")))
> [1] 6392
> > 
> > # test url connections on http
> > zz <- url("http://cran.r-project.org/")
> > readLines(zz)
>  [1] "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.01 Frameset//EN\" \"http://www.w3.org/TR/html4/frameset.dtd\">"
>  [2] "<html>"                                                                                                   
>  [3] "<head>"                                                                                                   
>  [4] "<title>The Comprehensive R Archive Network</title>"                                                       
>  [5] "<META HTTP-EQUIV=\"content-type\" CONTENT=\"text/html; charset=utf-8\">"                                  
>  [6] "<link rel=\"icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                           
>  [7] "<link rel=\"shortcut icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                  
>  [8] "<link rel=\"stylesheet\" type=\"text/css\" href=\"R.css\">"                                               
>  [9] "</head>"                                                                                                  
> [10] ""                                                                                                         
> [11] "<FRAMESET cols=\"1*, 4*\" border=0>"                                                                      
> [12] "<FRAMESET rows=\"120, 1*\">"                                                                              
> [13] "<FRAME src=\"logo.html\" name=\"logo\" frameborder=0>"                                                    
> [14] "<FRAME src=\"navbar.html\" name=\"contents\" frameborder=0>"                                              
> [15] "</FRAMESET>"                                                                                              
> [16] "<FRAME src=\"banner.shtml\" name=\"banner\" frameborder=0>"                                               
> [17] "<noframes>"                                                                                               
> [18] "<h1>The Comprehensive R Archive Network</h1>"                                                             
> [19] ""                                                                                                         
> [20] "Your browser seems not to support frames,"                                                                
> [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN."                                           
> [22] "</noframes>"                                                                                              
> [23] "</FRAMESET>"                                                                                              
> > close(zz)
> > 
> > ## check graceful failure:
> > try(zz <- url("http://foo.bar", "r"))
> > 
> > # and via read.table, test http and ftp.
> > 
> > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
>      V1  V2   V3    V4 V5
> 1     1 307  930 36.58  0
> 2     2 307  940 36.73  0
> 3     3 307  950 36.93  0
> 4     4 307 1000 37.15  0
> 5     5 307 1010 37.23  0
> 6     6 307 1020 37.24  0
> 7     7 307 1030 37.24  0
> 8     8 307 1040 36.90  0
> 9     9 307 1050 36.95  0
> 10   10 307 1100 36.89  0
> 11   11 307 1110 36.95  0
> 12   12 307 1120 37.00  0
> 13   13 307 1130 36.90  0
> 14   14 307 1140 36.99  0
> 15   15 307 1150 36.99  0
> 16   16 307 1200 37.01  0
> 17   17 307 1210 37.04  0
> 18   18 307 1220 37.04  0
> 19   19 307 1230 37.14  0
> 20   20 307 1240 37.07  0
> 21   21 307 1250 36.98  0
> 22   22 307 1300 37.01  0
> 23   23 307 1310 36.97  0
> 24   24 307 1320 36.97  0
> 25   25 307 1330 37.12  0
> 26   26 307 1340 37.13  0
> 27   27 307 1350 37.14  0
> 28   28 307 1400 37.15  0
> 29   29 307 1410 37.17  0
> 30   30 307 1420 37.12  0
> 31   31 307 1430 37.12  0
> 32   32 307 1440 37.17  0
> 33   33 307 1450 37.28  0
> 34   34 307 1500 37.28  0
> 35   35 307 1510 37.44  0
> 36   36 307 1520 37.51  0
> 37   37 307 1530 37.64  0
> 38   38 307 1540 37.51  0
> 39   39 307 1550 37.98  1
> 40   40 307 1600 38.02  1
> 41   41 307 1610 38.00  1
> 42   42 307 1620 38.24  1
> 43   43 307 1630 38.10  1
> 44   44 307 1640 38.24  1
> 45   45 307 1650 38.11  1
> 46   46 307 1700 38.02  1
> 47   47 307 1710 38.11  1
> 48   48 307 1720 38.01  1
> 49   49 307 1730 37.91  1
> 50   50 307 1740 37.96  1
> 51   51 307 1750 38.03  1
> 52   52 307 1800 38.17  1
> 53   53 307 1810 38.19  1
> 54   54 307 1820 38.18  1
> 55   55 307 1830 38.15  1
> 56   56 307 1840 38.04  1
> 57   57 307 1850 37.96  1
> 58   58 307 1900 37.84  1
> 59   59 307 1910 37.83  1
> 60   60 307 1920 37.84  1
> 61   61 307 1930 37.74  1
> 62   62 307 1940 37.76  1
> 63   63 307 1950 37.76  1
> 64   64 307 2000 37.64  1
> 65   65 307 2010 37.63  1
> 66   66 307 2020 38.06  1
> 67   67 307 2030 38.19  1
> 68   68 307 2040 38.35  1
> 69   69 307 2050 38.25  1
> 70   70 307 2100 37.86  1
> 71   71 307 2110 37.95  1
> 72   72 307 2120 37.95  1
> 73   73 307 2130 37.76  1
> 74   74 307 2140 37.60  1
> 75   75 307 2150 37.89  1
> 76   76 307 2200 37.86  1
> 77   77 307 2210 37.71  1
> 78   78 307 2220 37.78  1
> 79   79 307 2230 37.82  1
> 80   80 307 2240 37.76  1
> 81   81 307 2250 37.81  1
> 82   82 307 2300 37.84  1
> 83   83 307 2310 38.01  1
> 84   84 307 2320 38.10  1
> 85   85 307 2330 38.15  1
> 86   86 307 2340 37.92  1
> 87   87 307 2350 37.64  1
> 88   88 308    0 37.70  1
> 89   89 308   10 37.46  1
> 90   90 308   20 37.41  1
> 91   91 308   30 37.46  1
> 92   92 308   40 37.56  1
> 93   93 308   50 37.55  1
> 94   94 308  100 37.75  1
> 95   95 308  110 37.76  1
> 96   96 308  120 37.73  1
> 97   97 308  130 37.77  1
> 98   98 308  140 38.01  1
> 99   99 308  150 38.04  1
> 100 100 308  200 38.07  1
> > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
>      V1  V2   V3    V4 V5
> 1     1 307  930 36.58  0
> 2     2 307  940 36.73  0
> 3     3 307  950 36.93  0
> 4     4 307 1000 37.15  0
> 5     5 307 1010 37.23  0
> 6     6 307 1020 37.24  0
> 7     7 307 1030 37.24  0
> 8     8 307 1040 36.90  0
> 9     9 307 1050 36.95  0
> 10   10 307 1100 36.89  0
> 11   11 307 1110 36.95  0
> 12   12 307 1120 37.00  0
> 13   13 307 1130 36.90  0
> 14   14 307 1140 36.99  0
> 15   15 307 1150 36.99  0
> 16   16 307 1200 37.01  0
> 17   17 307 1210 37.04  0
> 18   18 307 1220 37.04  0
> 19   19 307 1230 37.14  0
> 20   20 307 1240 37.07  0
> 21   21 307 1250 36.98  0
> 22   22 307 1300 37.01  0
> 23   23 307 1310 36.97  0
> 24   24 307 1320 36.97  0
> 25   25 307 1330 37.12  0
> 26   26 307 1340 37.13  0
> 27   27 307 1350 37.14  0
> 28   28 307 1400 37.15  0
> 29   29 307 1410 37.17  0
> 30   30 307 1420 37.12  0
> 31   31 307 1430 37.12  0
> 32   32 307 1440 37.17  0
> 33   33 307 1450 37.28  0
> 34   34 307 1500 37.28  0
> 35   35 307 1510 37.44  0
> 36   36 307 1520 37.51  0
> 37   37 307 1530 37.64  0
> 38   38 307 1540 37.51  0
> 39   39 307 1550 37.98  1
> 40   40 307 1600 38.02  1
> 41   41 307 1610 38.00  1
> 42   42 307 1620 38.24  1
> 43   43 307 1630 38.10  1
> 44   44 307 1640 38.24  1
> 45   45 307 1650 38.11  1
> 46   46 307 1700 38.02  1
> 47   47 307 1710 38.11  1
> 48   48 307 1720 38.01  1
> 49   49 307 1730 37.91  1
> 50   50 307 1740 37.96  1
> 51   51 307 1750 38.03  1
> 52   52 307 1800 38.17  1
> 53   53 307 1810 38.19  1
> 54   54 307 1820 38.18  1
> 55   55 307 1830 38.15  1
> 56   56 307 1840 38.04  1
> 57   57 307 1850 37.96  1
> 58   58 307 1900 37.84  1
> 59   59 307 1910 37.83  1
> 60   60 307 1920 37.84  1
> 61   61 307 1930 37.74  1
> 62   62 307 1940 37.76  1
> 63   63 307 1950 37.76  1
> 64   64 307 2000 37.64  1
> 65   65 307 2010 37.63  1
> 66   66 307 2020 38.06  1
> 67   67 307 2030 38.19  1
> 68   68 307 2040 38.35  1
> 69   69 307 2050 38.25  1
> 70   70 307 2100 37.86  1
> 71   71 307 2110 37.95  1
> 72   72 307 2120 37.95  1
> 73   73 307 2130 37.76  1
> 74   74 307 2140 37.60  1
> 75   75 307 2150 37.89  1
> 76   76 307 2200 37.86  1
> 77   77 307 2210 37.71  1
> 78   78 307 2220 37.78  1
> 79   79 307 2230 37.82  1
> 80   80 307 2240 37.76  1
> 81   81 307 2250 37.81  1
> 82   82 307 2300 37.84  1
> 83   83 307 2310 38.01  1
> 84   84 307 2320 38.10  1
> 85   85 307 2330 38.15  1
> 86   86 307 2340 37.92  1
> 87   87 307 2350 37.64  1
> 88   88 308    0 37.70  1
> 89   89 308   10 37.46  1
> 90   90 308   20 37.41  1
> 91   91 308   30 37.46  1
> 92   92 308   40 37.56  1
> 93   93 308   50 37.55  1
> 94   94 308  100 37.75  1
> 95   95 308  110 37.76  1
> 96   96 308  120 37.73  1
> 97   97 308  130 37.77  1
> 98   98 308  140 38.01  1
> 99   99 308  150 38.04  1
> 100 100 308  200 38.07  1
> > 
> > ## everything from here on is directly over sockets
> > if(!capabilities("sockets")) stop("no socket capabilities")
> > 
> > # do the same thing via sockets (cut-down httpclient)
> > httpget <- function (url, port = 80)
> + {
> +     urlel <- strsplit(url, "/")[[1]]
> +     if (urlel[1] != "http:") stop("Not an http:// URL")
> +     host <- urlel[3]
> +     rurl <- paste(c("", urlel[-(1:3)]), collapse = "/")
> +     a <- make.socket(host, port = port)
> +     on.exit(close.socket(a))
> +     headreq <- paste("HEAD", rurl, "HTTP/1.0\r\nConnection: Keep-Alive\r\nAccept: text/plain\r\n\r\n")
> +     write.socket(a, headreq)
> +     head <- read.socket(a, maxlen = 8000)
> +     b <- strsplit(head, "\n")[[1]]
> +     if (length(grep("200 OK", b[1])) == 0) stop(b[1])
> +     len <- as.numeric(strsplit(grep("Content-Length", b, value = TRUE),
> +                                ":")[[1]][2])
> +     getreq <- paste("GET", rurl, "HTTP/1.0\r\nConnection: Keep-Alive\r\nAccept: text/plain\r\n\r\n")
> +     write.socket(a, getreq)
> +     junk <- read.socket(a, maxlen = nchar(head))
> +     data <- ""
> +     b <- strsplit(c(head, junk), "\n")
> +     nn <- length(b[[1]])
> +     if (length(b[[2]]) > nn)
> +         data <- paste(b[[2]][-(1:nn)], collapse = "\n")
> +     while (nchar(data) < len) {
> +         data <- paste(data, read.socket(a, maxlen = len - nchar(data)),
> +                       sep = "")
> +     }
> +     strsplit(data, "\n")[[1]]
> + }
> > 
> > if(nzchar(Sys.getenv("http_proxy")) || nzchar(Sys.getenv("HTTP_PROXY"))) {
> +     cat("http proxy is set, so skip test of http over sockets\n")
> + } else {
> +     httpget("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
> + }
>   [1] "001 307 0930 36.58 0"  "002 307 0940 36.73 0"  "003 307 0950 36.93 0" 
>   [4] "004 307 1000 37.15 0"  "005 307 1010 37.23 0"  "006 307 1020 37.24 0" 
>   [7] "007 307 1030 37.24 0"  "008 307 1040 36.90 0"  "009 307 1050 36.95 0" 
>  [10] "010 307 1100 36.89 0"  "011 307 1110 36.95 0"  "012 307 1120 37.00 0" 
>  [13] "013 307 1130 36.90 0"  "014 307 1140 36.99 0"  "015 307 1150 36.99 0" 
>  [16] "016 307 1200 37.01 0"  "017 307 1210 37.04 0"  "018 307 1220 37.04 0" 
>  [19] "019 307 1230 37.14 0"  "020 307 1240 37.07 0"  "021 307 1250 36.98 0" 
>  [22] "022 307 1300 37.01 0"  "023 307 1310 36.97 0"  "024 307 1320 36.97 0" 
>  [25] "025 307 1330 37.12 0"  "026 307 1340 37.13 0"  "027 307 1350 37.14 0" 
>  [28] "028 307 1400 37.15 0"  "029 307 1410 37.17 0"  "030 307 1420 37.12 0" 
>  [31] "031 307 1430 37.12 0"  "032 307 1440 37.17 0"  "033 307 1450 37.28 0" 
>  [34] "034 307 1500 37.28 0"  "035 307 1510 37.44 0"  "036 307 1520 37.51 0" 
>  [37] "037 307 1530 37.64 0"  "038 307 1540 37.51 0"  "039 307 1550 37.98 1" 
>  [40] "040 307 1600 38.02 1"  "041 307 1610 38.00 1 " "042 307 1620 38.24 1 "
>  [43] "043 307 1630 38.10 1"  "044 307 1640 38.24 1"  "045 307 1650 38.11 1" 
>  [46] "046 307 1700 38.02 1"  "047 307 1710 38.11 1"  "048 307 1720 38.01 1" 
>  [49] "049 307 1730 37.91 1"  "050 307 1740 37.96 1"  "051 307 1750 38.03 1" 
>  [52] "052 307 1800 38.17 1"  "053 307 1810 38.19 1"  "054 307 1820 38.18 1" 
>  [55] "055 307 1830 38.15 1"  "056 307 1840 38.04 1"  "057 307 1850 37.96 1" 
>  [58] "058 307 1900 37.84 1"  "059 307 1910 37.83 1"  "060 307 1920 37.84 1" 
>  [61] "061 307 1930 37.74 1"  "062 307 1940 37.76 1"  "063 307 1950 37.76 1" 
>  [64] "064 307 2000 37.64 1"  "065 307 2010 37.63 1"  "066 307 2020 38.06 1" 
>  [67] "067 307 2030 38.19 1"  "068 307 2040 38.35 1"  "069 307 2050 38.25 1" 
>  [70] "070 307 2100 37.86 1"  "071 307 2110 37.95 1"  "072 307 2120 37.95 1" 
>  [73] "073 307 2130 37.76 1"  "074 307 2140 37.60 1"  "075 307 2150 37.89 1" 
>  [76] "076 307 2200 37.86 1"  "077 307 2210 37.71 1"  "078 307 2220 37.78 1" 
>  [79] "079 307 2230 37.82 1"  "080 307 2240 37.76 1"  "081 307 2250 37.81 1" 
>  [82] "082 307 2300 37.84 1"  "083 307 2310 38.01 1"  "084 307 2320 38.10 1" 
>  [85] "085 307 2330 38.15 1"  "086 307 2340 37.92 1"  "087 307 2350 37.64 1" 
>  [88] "088 308 0000 37.70 1"  "089 308 0010 37.46 1"  "090 308 0020 37.41 1" 
>  [91] "091 308 0030 37.46 1"  "092 308 0040 37.56 1"  "093 308 0050 37.55 1" 
>  [94] "094 308 0100 37.75 1"  "095 308 0110 37.76 1"  "096 308 0120 37.73 1" 
>  [97] "097 308 0130 37.77 1"  "098 308 0140 38.01 1"  "099 308 0150 38.04 1" 
> [100] "100 308 0200 38.07 1" 
> > 
> > finger <- function(user, host = "localhost", port = 79, print = TRUE)
> + {
> +     if (!is.character(user))
> +         stop("user name must be a string")
> +     user <- paste(user,"\r\n")
> +     socket <- make.socket(host, port)
> +     on.exit(close.socket(socket))
> +     write.socket(socket, user)
> +     output <- character(0)
> +     repeat{
> +         ss <- read.socket(socket)
> +         if (ss == "") break
> +         output <- paste(output, ss)
> +     }
> +     close.socket(socket)
> +     if (print) cat(output)
> +     invisible(output)
> + }
> > try(finger("root"))  ## only works if your site provides a finger daemon
> socket error: Connection refused
> Error in make.socket(host, port) : socket not established
> > 
 OK
make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.3/tests'
Processing files: R-3.1.3-1.fc22.i686
Processing files: R-core-3.1.3-1.fc22.i686
+ exit 0
Provides: R-KernSmooth = 2.23.14 R-MASS = 7.3.39 R-Matrix = 1.1.5 R-base = 3.1.3 R-boot = 1.3.15 R-class = 7.3.12 R-cluster = 2.0.1 R-codetools = 0.2.10 R-core = 3.1.3-1.fc22 R-core(x86-32) = 3.1.3-1.fc22 R-datasets = 3.1.3 R-foreign = 0.8.63 R-grDevices = 3.1.3 R-graphics = 3.1.3 R-grid = 3.1.3 R-lattice = 0.20.30 R-methods = 3.1.3 R-mgcv = 1.8.4 R-nlme = 3.1.120 R-nnet = 7.3.9 R-parallel = 3.1.3 R-rpart = 4.1.9 R-spatial = 7.3.9 R-splines = 3.1.3 R-stats = 3.1.3 R-stats4 = 3.1.3 R-survival = 2.38.1 R-tcltk = 3.1.3 R-tools = 3.1.3 R-utils = 3.1.3 config(R-core) = 3.1.3-1.fc22 libR.so
Requires(interp): /bin/sh /bin/sh /bin/sh /bin/sh
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /bin/sh
Requires(preun): /bin/sh
Requires(postun): /bin/sh
Requires(posttrans): /bin/sh
Requires: /bin/bash /bin/sh ld-linux.so.2 ld-linux.so.2(GLIBC_2.1) libICE.so.6 libR.so libSM.so.6 libX11.so.6 libXext.so.6 libXmu.so.6 libXt.so.6 libblas.so.3 libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.11) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.16) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_2.8) libcairo.so.2 libdl.so.2 libdl.so.2(GLIBC_2.0) libdl.so.2(GLIBC_2.1) libgcc_s.so.1 libgcc_s.so.1(GCC_3.3.1) libgfortran.so.3 libglib-2.0.so.0 libgobject-2.0.so.0 libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libicui18n.so.54 libicuuc.so.54 libjpeg.so.62 libjpeg.so.62(LIBJPEG_6.2) liblapack.so.3 liblzma.so.5 liblzma.so.5(XZ_5.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libpango-1.0.so.0 libpangocairo-1.0.so.0 libpcre.so.1 libpng16.so.16 libpng16.so.16(PNG16_0) libpthread.so.0 libpthread.so.0(GLIBC_2.0) libpthread.so.0(GLIBC_2.2) libquadmath.so.0 libreadline.so.6 librt.so.1 librt.so.1(GLIBC_2.2) libtcl8.6.so libtiff.so.5 libtiff.so.5(LIBTIFF_4.0) libtk8.6.so libtre.so.5 libz.so.1 rtld(GNU_HASH)
Obsoletes: R-Matrix < 0.999375-7
Processing files: R-core-devel-3.1.3-1.fc22.i686
Provides: R-Matrix-devel = 1.1.5 R-core-devel = 3.1.3-1.fc22 R-core-devel(x86-32) = 3.1.3-1.fc22 pkgconfig(libR) = 3.1.3
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Obsoletes: R-Matrix-devel < 0.999375-7
Processing files: R-devel-3.1.3-1.fc22.i686
Processing files: R-java-3.1.3-1.fc22.i686
Processing files: R-java-devel-3.1.3-1.fc22.i686
Processing files: libRmath-3.1.3-1.fc22.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.YqkGIy
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-3.1.3
+ DOCDIR=/builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/doc/libRmath
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/doc/libRmath
+ cp -pr doc/COPYING /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386/usr/share/doc/libRmath
+ exit 0
Provides: libRmath = 3.1.3-1.fc22 libRmath(x86-32) = 3.1.3-1.fc22 libRmath.so
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgomp.so.1 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libpthread.so.0 libpthread.so.0(GLIBC_2.0) rtld(GNU_HASH)
Processing files: libRmath-devel-3.1.3-1.fc22.i686
Provides: libRmath-devel = 3.1.3-1.fc22 libRmath-devel(x86-32) = 3.1.3-1.fc22 pkgconfig(libRmath) = 3.1.3
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Processing files: libRmath-static-3.1.3-1.fc22.i686
Provides: libRmath-static = 3.1.3-1.fc22 libRmath-static(x86-32) = 3.1.3-1.fc22
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-debuginfo-3.1.3-1.fc22.i686
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386
Wrote: /builddir/build/RPMS/R-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/R-core-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/R-core-devel-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/R-devel-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/R-java-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/R-java-devel-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/libRmath-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/libRmath-devel-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/libRmath-static-3.1.3-1.fc22.i686.rpm
Wrote: /builddir/build/RPMS/R-debuginfo-3.1.3-1.fc22.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.vyqjcr
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-3.1.3
+ rm -rf /builddir/build/BUILDROOT/R-3.1.3-1.fc22.i386
+ exit 0
Child return code was: 0
LEAVE do -->