Mock Version: 1.1.41 Mock Version: 1.1.41 ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/R.spec'], False, '/var/lib/mock/f21-build-2544565-429744/root/', None, 86400, True, False, 1000, 425, None, False, {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n ""', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}, logger=) Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target i686 --nodeps builddir/build/SPECS/R.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n ""', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} warning: Could not canonicalize hostname: buildvm-03.phx2.fedoraproject.org Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/R-3.1.2-1.fc21.src.rpm Child return code was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R.spec'], False, '/var/lib/mock/f21-build-2544565-429744/root/', None, 86400, True, False, 1000, 425, None, False, {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n ""', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}, logger=) Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target i686 --nodeps builddir/build/SPECS/R.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'echo -n ""', 'HOME': '/builddir', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} Building target platforms: i686 Building for target i686 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OK7hvj + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf R-3.1.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/R-3.1.2.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd R-3.1.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + cat + chmod +x /builddir/build/BUILD/R-3.1.2/R-prov + cat + chmod +x /builddir/build/BUILD/R-3.1.2/R-req + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.cx9zly + umask 022 + cd /builddir/build/BUILD + cd R-3.1.2 + echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library:/usr/share/R/library'\''}' + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_PRINTCMD=lpr + R_PRINTCMD=lpr + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open + case "i686" in + export 'CC=gcc -m32' + CC='gcc -m32' + export 'CXX=g++ -m32' + CXX='g++ -m32' + export 'F77=gfortran -m32' + F77='gfortran -m32' + export 'FC=gfortran -m32' + FC='gfortran -m32' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro ' + export LDFLAGS + '[' 1 = 1 ']' ++ find . -name config.guess -o -name config.sub + for i in '$(find . -name config.guess -o -name config.sub)' ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./tools/config.sub ++ basename ./tools/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub + for i in '$(find . -name config.guess -o -name config.sub)' ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./tools/config.guess ++ basename ./tools/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess + '[' 1 = 1 ']' + '[' x '!=' x ']' + ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-system-tre --with-system-zlib --with-system-bzlib --with-system-pcre --with-lapack --with-blas --with-tcl-config=/usr/lib/tclConfig.sh --with-tk-config=/usr/lib/tkConfig.sh --enable-R-shlib --enable-prebuilt-html rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R configure: WARNING: unrecognized options: --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-dependency-tracking + cat CONFIGURE.log + grep -A30 'R is now' - + make make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/m4' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tools' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/etc' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/etc' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/share' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/share' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/scripts' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/include' mkdir -p -- ../../include make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/extra' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/appl' gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c integrate.c -o integrate.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c interv.c -o interv.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c maxcol.c -o maxcol.o In file included from /usr/include/math.h:26:0, from ../../src/include/R_ext/Arith.h:37, from maxcol.c:33: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c optim.c -o optim.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pretty.c -o pretty.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c uncmin.c -o uncmin.o gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dchdc.f -o dchdc.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dpbfa.f -o dpbfa.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dpbsl.f -o dpbsl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dpoco.f -o dpoco.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dpodi.f -o dpodi.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dpofa.f -o dpofa.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dposl.f -o dposl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dqrdc.f -o dqrdc.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dqrdc2.f -o dqrdc2.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dqrls.f -o dqrls.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dqrsl.f -o dqrsl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dqrutl.f -o dqrutl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dsvdc.f -o dsvdc.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dtrco.f -o dtrco.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dtrsl.f -o dtrsl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" rm -f libappl.a ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/appl' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/nmath' gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mlutils.c -o mlutils.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c d1mach.c -o d1mach.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c i1mach.c -o i1mach.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fmax2.c -o fmax2.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fmin2.c -o fmin2.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fprec.c -o fprec.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fround.c -o fround.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sign.c -o sign.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fsign.c -o fsign.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c imax2.c -o imax2.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c imin2.c -o imin2.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c log1p.c -o log1p.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c expm1.c -o expm1.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gammalims.c -o gammalims.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bd0.c -o bd0.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gamma.c -o gamma.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lgamma.c -o lgamma.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c beta.c -o beta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lbeta.c -o lbeta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c polygamma.c -o polygamma.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cospi.c -o cospi.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c choose.c -o choose.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c snorm.c -o snorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sexp.c -o sexp.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgamma.c -o dgamma.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pgamma.c -o pgamma.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qgamma.c -o qgamma.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rgamma.c -o rgamma.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dbeta.c -o dbeta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pbeta.c -o pbeta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qbeta.c -o qbeta.o qbeta.c: In function 'Rf_qbeta': qbeta.c:58:14: warning: variable 'warned' set but not used [-Wunused-but-set-variable] Rboolean warned = FALSE; ^ gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbeta.c -o rbeta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dunif.c -o dunif.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c punif.c -o punif.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qunif.c -o qunif.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c runif.c -o runif.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnorm.c -o dnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnorm.c -o pnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnorm.c -o qnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnorm.c -o rnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plnorm.c -o plnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c df.c -o df.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pf.c -o pf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qf.c -o qf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rf.c -o rf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnf.c -o dnf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dt.c -o dt.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pt.c -o pt.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qt.c -o qt.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rt.c -o rt.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnt.c -o dnt.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dchisq.c -o dchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pchisq.c -o pchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qchisq.c -o qchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rchisq.c -o rchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dbinom.c -o dbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pbinom.c -o pbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qbinom.c -o qbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbinom.c -o rbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dexp.c -o dexp.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pexp.c -o pexp.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qexp.c -o qexp.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rexp.c -o rexp.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgeom.c -o dgeom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pgeom.c -o pgeom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qgeom.c -o qgeom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rgeom.c -o rgeom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dhyper.c -o dhyper.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c phyper.c -o phyper.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qhyper.c -o qhyper.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rhyper.c -o rhyper.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dpois.c -o dpois.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ppois.c -o ppois.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qpois.c -o qpois.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpois.c -o rpois.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dweibull.c -o dweibull.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pweibull.c -o pweibull.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qweibull.c -o qweibull.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rweibull.c -o rweibull.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dlogis.c -o dlogis.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plogis.c -o plogis.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qlogis.c -o qlogis.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rlogis.c -o rlogis.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnf.c -o pnf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnt.c -o pnt.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnf.c -o qnf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnt.c -o qnt.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ptukey.c -o ptukey.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qtukey.c -o qtukey.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c toms708.c -o toms708.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c wilcox.c -o wilcox.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c signrank.c -o signrank.o rm -rf libnmath.a ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/nmath' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/unix' gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rembedded.c -o Rembedded.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dynload.c -o dynload.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c system.c -o system.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sys-unix.c -o sys-unix.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sys-std.c -o sys-std.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c X11.c -o X11.o rm -rf libunix.a ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/unix' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/unix' gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -Wl,-z,relro -DR_HOME='"/builddir/build/BUILD/R-3.1.2"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/unix' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making vfonts.d from vfonts.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/main' gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c CommandLineArgs.c -o CommandLineArgs.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rdynload.c -o Rdynload.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Renviron.c -o Renviron.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c RNG.c -o RNG.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agrep.c -o agrep.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c apply.c -o apply.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c arithmetic.c -o arithmetic.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c array.c -o array.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c attrib.c -o attrib.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bind.c -o bind.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c builtin.c -o builtin.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c character.c -o character.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coerce.c -o coerce.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c colors.c -o colors.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c complex.c -o complex.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c connections.c -o connections.o connections.c: In function 'do_readbin': connections.c:4001:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] INTEGER(ans)[i] = (int)*((short *)buf); ^ connections.c:4003:8: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] INTEGER(ans)[i] = (int)*((unsigned short *)buf); ^ connections.c:4011:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] INTEGER(ans)[i] = (int)*((_lli_t *)buf); ^ connections.c:4026:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] REAL(ans)[i] = (double)*((float *)buf); ^ connections.c:4030:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] REAL(ans)[i] = (double)*((long double *)buf); ^ gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c context.c -o context.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cum.c -o cum.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dcf.c -o dcf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c datetime.c -o datetime.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c debug.c -o debug.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c deparse.c -o deparse.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c devices.c -o devices.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dotcode.c -o dotcode.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dounzip.c -o dounzip.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dstruct.c -o dstruct.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c duplicate.c -o duplicate.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c edit.c -o edit.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c engine.c -o engine.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c envir.c -o envir.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c errors.c -o errors.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c eval.c -o eval.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c format.c -o format.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gevents.c -o gevents.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gram.c -o gram.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gram-ex.c -o gram-ex.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c graphics.c -o graphics.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c grep.c -o grep.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c identical.c -o identical.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c inlined.c -o inlined.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c inspect.c -o inspect.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c internet.c -o internet.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c iosupport.c -o iosupport.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lapack.c -o lapack.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c list.c -o list.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c localecharset.c -o localecharset.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c logic.c -o logic.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c main.c -o main.o main.c: In function 'dummy_ii': main.c:1594:5: warning: function returns address of local variable [-Wreturn-local-addr] return (uintptr_t) ⅈ ^ gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mapply.c -o mapply.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c match.c -o match.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c memory.c -o memory.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c names.c -o names.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c objects.c -o objects.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c options.c -o options.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c paste.c -o paste.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c platform.c -o platform.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plot.c -o plot.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plot3d.c -o plot3d.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plotmath.c -o plotmath.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c print.c -o print.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c printarray.c -o printarray.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c printvector.c -o printvector.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c printutils.c -o printutils.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qsort.c -o qsort.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c random.c -o random.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c raw.c -o raw.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c registration.c -o registration.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c relop.c -o relop.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rlocale.c -o rlocale.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c saveload.c -o saveload.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c scan.c -o scan.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c seq.c -o seq.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c serialize.c -o serialize.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sort.c -o sort.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c source.c -o source.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c split.c -o split.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sprintf.c -o sprintf.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c startup.c -o startup.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c subassign.c -o subassign.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c subscript.c -o subscript.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c subset.c -o subset.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c summary.c -o summary.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sysutils.c -o sysutils.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c times.c -o times.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c unique.c -o unique.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c util.c -o util.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c version.c -o version.o gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c vfonts.c -o vfonts.o gfortran -m32 -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c xxxpr.f -o xxxpr.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -shared -fopenmp -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` -lblas -lgfortran -lm -lquadmath -lreadline -ltre -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/main' mkdir -p -- /builddir/build/BUILD/R-3.1.2/bin/exec mkdir -p -- /builddir/build/BUILD/R-3.1.2/lib make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/main' gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rmain.c -o Rmain.o gcc -m32 -std=gnu99 -Wl,--export-dynamic -fopenmp -L../../lib -Wl,-z,relro -o R.bin Rmain.o -lR make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/main' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/internet' gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -fvisibility=hidden -c internet.c -o internet.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -fvisibility=hidden -c sock.c -o sock.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -m32 -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -lR make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-3.1.2/modules make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/internet' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/internet' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/lapack' gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Lapack.c -o Lapack.o gcc -m32 -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm -lquadmath make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/lapack' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/lapack' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c g_alab_her.c -o g_alab_her.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c g_cntrlify.c -o g_cntrlify.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c g_fontdb.c -o g_fontdb.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c g_her_glyph.c -o g_her_glyph.o gcc -m32 -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -lR -lm make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c devX11.c -o devX11.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rotated.c -o rotated.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbitmap.c -o rbitmap.o gcc -m32 -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -ltiff -ljpeg -lpng -lz -lR -lm gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dataentry.c -o dataentry.o gcc -m32 -std=gnu99 -shared -L../../../lib -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' mkdir -p -- ../../library make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/profile' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/translations' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/translations' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/translations' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/base' building package 'base' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c text.c -o text.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rmd5.c -o Rmd5.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c md5.c -o md5.o md5.c: In function 'md5_finish_ctx': md5.c:102:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] *(md5_uint32 *) &ctx->buffer[bytes + pad] = SWAP (ctx->total[0] << 3); ^ md5.c:103:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] *(md5_uint32 *) &ctx->buffer[bytes + pad + 4] = SWAP ((ctx->total[1] << 3) | ^ gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c signals.c -o signals.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c install.c -o install.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c getfmts.c -o getfmts.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c http.c -o http.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gramLatex.c -o gramLatex.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gramRd.c -o gramRd.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tools/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tools/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/compiler' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/compiler' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/compiler' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c io.c -o io.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c size.c -o size.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sock.c -o sock.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stubs.c -o stubs.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c utils.c -o utils.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/utils/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/utils/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/utils' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c axis_scales.c -o axis_scales.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chull.c -o chull.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c devices.c -o devices.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stubs.c -o stubs.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c colors.c -o colors.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c devCairo.c -o devCairo.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c devPicTeX.c -o devPicTeX.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c devPS.c -o devPS.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c devQuartz.c -o devQuartz.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src/cairo' make[9]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src/cairo' gcc -m32 -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cairoBM.c -o cairoBM.o gcc -m32 -std=gnu99 -shared -L../../../../../lib -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm make[9]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src/cairo' make[8]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src/cairo' make[7]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src/cairo' make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grDevices' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c base.c -o base.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c graphics.c -o graphics.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c par.c -o par.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plot.c -o plot.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plot3d.c -o plot3d.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stem.c -o stem.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/graphics' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c kmeans.c -o kmeans.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ansari.c -o ansari.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bandwidths.c -o bandwidths.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chisqsim.c -o chisqsim.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c d2x2xk.c -o d2x2xk.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fexact.c -o fexact.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c kendall.c -o kendall.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ks.c -o ks.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c line.c -o line.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c smooth.c -o smooth.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c prho.c -o prho.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c swilk.c -o swilk.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ksmooth.c -o ksmooth.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c loessc.c -o loessc.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c monoSpl.c -o monoSpl.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c isoreg.c -o isoreg.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Srunmed.c -o Srunmed.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dblcen.c -o dblcen.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c distance.c -o distance.o In file included from /usr/include/math.h:26:0, from ../../../include/R_ext/Arith.h:37, from distance.c:26: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c hclust-utils.c -o hclust-utils.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c nls.c -o nls.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rWishart.c -o rWishart.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c HoltWinters.c -o HoltWinters.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c PPsum.c -o PPsum.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c arima.c -o arima.o In file included from /usr/include/math.h:26:0, from ../../../include/R_ext/Arith.h:37, from arima.c:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c burg.c -o burg.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c filter.c -o filter.o In file included from /usr/include/math.h:26:0, from ../../../include/R_ext/Arith.h:37, from filter.c:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mAR.c -o mAR.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pacf.c -o pacf.o In file included from /usr/include/math.h:26:0, from ../../../include/R_ext/Arith.h:37, from pacf.c:29: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c starma.c -o starma.o In file included from /usr/include/math.h:26:0, from ../../../include/R_ext/Arith.h:37, from starma.c:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c port.c -o port.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c family.c -o family.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sbart.c -o sbart.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c approx.c -o approx.o In file included from /usr/include/math.h:26:0, from ../../../include/R_ext/Arith.h:37, from approx.c:25: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c loglin.c -o loglin.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lowess.c -o lowess.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c massdist.c -o massdist.o In file included from /usr/include/math.h:26:0, from ../../../include/R_ext/Arith.h:37, from massdist.c:31: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c splines.c -o splines.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lm.c -o lm.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c complete_cases.c -o complete_cases.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cov.c -o cov.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c deriv.c -o deriv.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fft.c -o fft.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fourier.c -o fourier.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c model.c -o model.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c optim.c -o optim.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c optimize.c -o optimize.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c integrate.c -o integrate.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c random.c -o random.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c distn.c -o distn.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c zeroin.c -o zeroin.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rcont.c -o rcont.o gcc -m32 -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c influence.c -o influence.o gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c bsplvd.f -o bsplvd.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c bvalue.f -o bvalue.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c bvalus.f -o bvalus.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c loessf.f -o loessf.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" loessf.f:59.14: j=DBLE(j)/2.D0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:1896.14: m=DBLE(l+u)/2.D0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:1398.20: i=phi(pi(ii)) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:927.12: lg=DBLE(lg)/2.D0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:522.22: if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:1204.13: ifloor=x 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:834.22: if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:1582.18: i1=dble((d+2)*(d+1))/2.d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) loessf.f:472.25: subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) 1 Warning: Unused dummy argument 'n' at (1) loessf.f:472.39: subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) 1 Warning: Unused dummy argument 'nc' at (1) loessf.f:827.31: subroutine ehg197(deg,tau,d,f,dk,trl) 1 Warning: Unused dummy argument 'tau' at (1) loessf.f:1987.31: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) 1 Warning: Unused dummy argument 'kappa' at (1) loessf.f:1987.47: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) 1 Warning: Unused dummy argument 'nv' at (1) loessf.f:1987.53: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) 1 Warning: Unused dummy argument 'nvmax' at (1) loessf.f:1856.22: logical i1,i2,i3,leaf 1 Warning: Unused variable 'i3' declared at (1) loessf.f:1497.50: subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'liv' at (1) loessf.f:1497.53: subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'lv' at (1) loessf.f:1648.30: subroutine lowese(iv,liv,lv,wv,m,z,s) 1 Warning: Unused dummy argument 'liv' at (1) loessf.f:1648.33: subroutine lowese(iv,liv,lv,wv,m,z,s) 1 Warning: Unused dummy argument 'lv' at (1) loessf.f:1667.39: subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) 1 Warning: Unused dummy argument 'liv' at (1) loessf.f:1667.42: subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) 1 Warning: Unused dummy argument 'lv' at (1) loessf.f:1699.30: subroutine lowesl(iv,liv,lv,wv,m,z,l) 1 Warning: Unused dummy argument 'liv' at (1) loessf.f:1699.33: subroutine lowesl(iv,liv,lv,wv,m,z,l) 1 Warning: Unused dummy argument 'lv' at (1) loessf.f:1721.33: subroutine lowesr(yy,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'liv' at (1) loessf.f:1721.36: subroutine lowesr(yy,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'lv' at (1) gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c ppr.f -o ppr.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" ppr.f:1323.8: t=a(ij) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:1328.8: t=a(ij) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:1336.8: t=a(ij) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:1343.8: t=a(ij) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:1354.9: tt=a(l) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:1379.8: t=a(i+1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:370.10: k=sc(j,1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:1088.10: ibw=0.5d0*span*n+0.5d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:396.10: k=sc(j,1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:404.10: k=sc(j,1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:115.8: l=sc(lm,1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:844.14: k=sp(j,1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:860.8: m=smod(1)+0.1d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:861.8: p=smod(2)+0.1d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:862.8: q=smod(3)+0.1d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:863.8: n=smod(4)+0.1d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:864.9: mu=smod(5)+0.1d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) ppr.f:1229.42: integer iparms(3), i, nk, ip, isetup,ier 1 Warning: Unused variable 'isetup' declared at (1) gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c qsbart.f -o qsbart.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c sgram.f -o sgram.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c sinerp.f -o sinerp.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c sslvrg.f -o sslvrg.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c stxwx.f -o stxwx.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c hclust.f -o hclust.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c kmns.f -o kmns.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c eureka.f -o eureka.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c stl.f -o stl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -ffloat-store -c portsrc.f -o portsrc.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" portsrc.f: In function 'i7do': portsrc.f:6428:0: warning: 'ncomp' may be used uninitialized in this function [-Wmaybe-uninitialized] NCOMP = NCOMP + 1 ^ portsrc.f:6339:0: warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized] INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC, ^ portsrc.f: In function 'df7dhb': portsrc.f:12276:0: warning: 'pp1o2' may be used uninitialized in this function [-Wmaybe-uninitialized] HPI = HES + PP1O2 ^ portsrc.f: In function 'dl7mst': portsrc.f:5328:0: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) ^ portsrc.f:5463:0: warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized] IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 ^ portsrc.f: In function 'dg7qts': portsrc.f:10089:0: warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized] V(GTSTEP) = -GTSTA ^ portsrc.f:10008:0: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) ^ portsrc.f:10003:0: warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized] LK = DMAX1(LK, PHI*W(PHIPIN)) ^ portsrc.f:10144:0: warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized] IF (KA .GE. KAMIN) GO TO 340 ^ portsrc.f: In function 'dd7dgb': portsrc.f:11900:0: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] V(NREDUC) = NRED ^ portsrc.f:11903:0: warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized] V(DST0) = DNWTST ^ portsrc.f: In function 'dg7qsb': portsrc.f:2390:0: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] V(NREDUC) = NRED ^ portsrc.f:2389:0: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] 60 V(DST0) = DS0 ^ portsrc.f: In function 'dl7msb': portsrc.f:7892:0: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] V(NREDUC) = NRED ^ portsrc.f:7891:0: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] 90 V(DST0) = DS0 ^ portsrc.f: In function 'df7hes': portsrc.f:8370:0: warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized] 210 IV(FDH) = HES ^ portsrc.f: In function 'dparck': portsrc.f:3456:0: warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized] IF (LIV .LT. MIV2) GO TO 300 ^ portsrc.f: In function 'drn2gb': portsrc.f:11737:0: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) ^ portsrc.f:11694:0: warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized] CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) ^ portsrc.f:11694:0: warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized] portsrc.f: In function 'drn2g': portsrc.f:440:0: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) ^ portsrc.f:348:0: warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized] CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) ^ portsrc.f:348:0: warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -m32 -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c lminfl.f -o lminfl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/datasets' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/datasets' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c do_substitute_direct.c -o do_substitute_direct.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c slot.c -o slot.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c class_support.c -o class_support.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c tests.c -o tests.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c utils.c -o utils.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/methods/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/methods/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/methods' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grid/src' making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gpar.c -o gpar.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c grid.c -o grid.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c just.c -o just.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c layout.c -o layout.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c matrix.c -o matrix.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c register.c -o register.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c state.c -o state.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c unit.c -o unit.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c util.c -o util.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c viewport.c -o viewport.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grid/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grid/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/grid' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/splines/src' making splines.d from splines.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c splines.c -o splines.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/splines/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/splines/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/splines' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats4' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats4' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/stats4' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include -I/usr/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include -I/usr/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c tcltk.c -o tcltk.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include -I/usr/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c tcltk_unix.c -o tcltk_unix.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib -ltcl8.6 -L/usr/lib -ltk8.6 -lX11 -lm -L../../../../lib -lR make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk/src' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/tcltk' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' make[5]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rngstream.c -o rngstream.o gcc -m32 -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fork.c -o fork.o gcc -m32 -std=gnu99 -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/parallel' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' you should 'make docs' now ... make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc' creating NEWS creating NEWS.pdf make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/html' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' installing parsed Rd make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' building/updating package metadata ... make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' writing package indices make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' building all R object docs converting help for package 'base' Arithmetic html Rd warning: /builddir/build/BUILD/R-3.1.2/src/library/base/man/Arithmetic.Rd:154: missing file link 'Ops' AsIs html Bessel html CallExternal html Colon html Comparison html Rd warning: /builddir/build/BUILD/R-3.1.2/src/library/base/man/Comparison.Rd:103: missing file link 'Ops' Constants html Control html Cstack_info html DateTimeClasses html Dates html Defunct html Deprecated html Encoding html EnvVar html Extract html Extract.data.frame html Extract.factor html Extremes html Foreign-internal html Foreign html Hyperbolic html ISOdatetime html Internal html InternalMethods html La_version html Last.value html Log html Logic html Rd warning: /builddir/build/BUILD/R-3.1.2/src/library/base/man/Logic.Rd:104: missing file link 'Ops' LongVectors html MathFun html Memory-limits html Memory html NA html NULL html NumericConstants html Ops.Date html Paren html Platform html Primitive html Quotes html Random-user html Random html RdUtils html Recall html Reserved html Rhome html Round html Special html Startup html Syntax html Sys.getenv html Sys.getpid html Sys.glob html Sys.info html Sys.localeconv html Sys.readlink html Sys.setFileTime html Sys.setenv html Sys.sleep html Sys.time html Sys.which html Trig html UseMethod html Vectorize html Version html abbreviate html agrep html all html all.equal html allnames html any html aperm html append html apply html args html array html as.Date html as.POSIXlt html Rd warning: /builddir/build/BUILD/R-3.1.2/src/library/base/man/as.POSIXlt.Rd:126: missing file link 'format.POSIXlt' as.data.frame html as.environment html as.function html assign html assignOps html attach html attr html attributes html autoload html backsolve html base-defunct html base-deprecated html base-internal html base-package html basename html bincode html bindenv html bitwise html body html bquote html browser html browserText html builtins html by html c html call html callCC html capabilities html cat html cbind html char.expand html character html charmatch html chartr html chol html chol2inv html class html col html colSums html colnames html commandArgs html comment html complex html conditions html conflicts html connections html contributors html copyright html crossprod html cumsum html cut.POSIXt html cut html data.class html data.frame html data.matrix html dataframeHelpers html date html dcf html debug html delayedAssign html deparse html deparseOpts html det html detach html dev html diag html diff html difftime html dim html dimnames html do.call html dontCheck html double html dput html drop html droplevels html dump html duplicated html dynload html eapply html eigen html encodeString html environment html eval html exists html expand.grid html expression html factor html file.access html file.choose html file.info html file.path html file.show html files html files2 html find.package html findInterval html force html formals html format html format.info html format.pval html formatDL html formatc html function html funprog html gc html gc.time html gctorture html get html getCallingDLL html getDLLRegisteredRoutines html getLoadedDLLs html getNativeSymbolInfo html gettext html getwd html gl html grep html grepRaw html groupGeneric html gzcon html hexmode html iconv html icuSetCollate html identical html identity html ifelse html integer html interaction html interactive html invisible html is.finite html is.function html is.language html is.object html is.recursive html is.single html is.unsorted html isR html isS4 html isSymmetric html jitter html kappa html kronecker html l10n_info html labels html lapply html lazyload html length html levels html libPaths html library html library.dynam html license html list html list.files html list2env html load html locales html logical html lower.tri html ls html make.names html make.unique html mapply html margin.table html mat.or.vec html match html match.arg html match.call html match.fun html matmult html matrix html maxCol html mean html memCompress html memory.profile html merge html message html missing html mode html name html names html nargs html nchar html nlevels html noquote html norm html normalizePath html notyet html nrow html ns-dblcolon html ns-hooks html ns-internal html ns-load html ns-reflect html ns-topenv html numeric html numeric_version html octmode html on.exit html options html order html outer html parse html paste html path.expand html pmatch html polyroot html pos.to.env html pretty html print html Rd warning: /builddir/build/BUILD/R-3.1.2/src/library/base/man/print.Rd:84: missing file link '.print.via.format' print.dataframe html print.default html prmatrix html proc.time html prod html prop.table html pushBack html qr html qraux html quit html range html rank html rapply html raw html rawConnection html rawConversion html readBin html readChar html readLines html readRDS html readRenviron html readline html reg.finalizer html regex html regmatches html rep html replace html rev html rle html rm html round.POSIXt html row html row.names html rowsum html sQuote html sample html save html scale html scan html search html seek html seq.Date html seq.POSIXt html seq html sequence html serialize html setTimeLimit html sets html shQuote html showConnections html sign html sink html slice.index html slotOp html socketSelect html solve html sort html source html split html sprintf html srcfile html standardGeneric html stop html stopifnot html strptime html strsplit html strtoi html strtrim html structure html strwrap html subset html substitute html substr html sum html summary html svd html sweep html switch html sys.parent html sys.source html system html system.file html system.time html system2 html t html table html tabulate html tapply html taskCallback html taskCallbackManager html taskCallbackNames html tempfile html textconnections html tilde html timezones html toString html trace html traceback html tracemem html transform html try html typeof html unique html unlink html unlist html unname html userhooks html utf8Conversion html vector html warning html warnings html weekday.POSIXt html which html which.min html with html withVisible html write html writeLines html xtfrm html zMachine html zScript html zapsmall html zpackages html zutils html Signals html converting help for package 'tools' HTMLheader html HTMLlinks html QC html Rd2HTML html Rd2txt_options html RdTextFilter html Rdiff html Rdindex html Rdutils html SweaveTeXFilter html add_datalist html assertCondition html bibstyle html buildVignette html buildVignettes html charsets html checkFF html checkMD5sums html checkPoFiles html checkRd html checkRdaFiles html checkTnF html checkVignettes html check_packages_in_dir html Rd warning: /builddir/build/BUILD/R-3.1.2/src/library/tools/man/check_packages_in_dir.Rd:96: missing file link 'parLapply' codoc html compactPDF html delimMatch html dependsOnPkgs html encoded html fileutils html find_gs_cmd html getDepList html getVignetteInfo html installFoundDepends html makeLazyLoading html make_translations_pkg html md5sum html package.dependencies html package_dependencies html parseLatex html parse_Rd html print.via.format html pskill html psnice html read.00Index html showNonASCII html startDynamicHelp html testInstalledPackage html texi2dvi html toHTML html toRd html tools-defunct html tools-deprecated html tools-package html undoc html update_pkg_po html vignetteDepends html vignetteEngine html writePACKAGES html xgettext html converting help for package 'utils' BATCH html INSTALL html PkgUtils html Question html REMOVE html RHOME html RShowDoc html RSiteSearch html Rprof html Rprofmem html Rscript html Rtangle html RweaveLatex html SHLIB html Sweave html SweaveSyntConv html SweaveUtils html URLencode html View html adist html alarm html apropos html aregexec html aspell-utils html aspell html available.packages html bibentry html browseEnv html browseURL html browseVignettes html bug.report html capture.output html changedFiles html chooseBioCmirror html chooseCRANmirror html citEntry html citation html cite html close.socket html combn html compareVersion html contrib.url html count.fields html create.post html data html dataentry html debugger html demo html download.file html download.packages html edit html edit.data.frame html example html file.edit html filetest html findLineNum html fix html flush.console html format html getAnywhere html getFromNamespace html getParseData html getS3method html glob2rx html globalVariables html head html help html help.request html help.search html help.start html install.packages html installed.packages html localeToCharset html ls_str html maintainer html make.packages.html html make.socket html menu html methods html mirrorAdmin html modifyList html news html object.size html package.skeleton html packageDescription html packageName html packageStatus html page html person html process.events html prompt html promptData html promptPackage html rcompgen html read.DIF html read.fortran html read.fwf html read.socket html read.table html recover html relist html remove.packages html removeSource html roman html rtags html savehistory html select.list html sessionInfo html setRepositories html sourceutils html stack html str html summaryRprof html tar html toLatex html txtProgressBar html type.convert html untar html unzip html update.packages html url.show html utils-defunct html utils-deprecated html utils-package html vignette html write.table html zip html COMPILE html LINK html memory.size html nsl html converting help for package 'grDevices' Devices html Hershey html Japanese html Type1Font html adjustcolor html as.graphicsAnnot html as.raster html axisTicks html boxplot.stats html cairo html check.options html chull html cm html col2rgb html colorRamp html colors html contourLines html convertColor html densCols html dev html dev.capabilities html dev.capture html dev.flush html dev.interactive html dev.size html dev2 html dev2bitmap html devAskNewPage html embedFonts html extendrange html getGraphicsEvent html grDevices-package html gray html gray.colors html hcl html hsv html make.rgb html n2mfrow html nclass html palette html palettes html pdf html pdf.options html pictex html plotmath html postscript html postscriptFonts html pretty.Date html ps.options html recordGraphics html recordplot html rgb html rgb2hsv html trans3d html xfig html xy.coords html xyTable html xyz.coords html png html quartz html quartzFonts html savePlot html x11 html x11Fonts html converting help for package 'graphics' abline html arrows html assocplot html axTicks html axis.POSIXct html axis html barplot html box html boxplot html boxplot.matrix html bxp html cdplot html clip html contour html convertXY html coplot html curve html dotchart html filled.contour html fourfoldplot html frame html graphics-defunct html graphics-package html grid html hist.POSIXt html hist html identify html image html layout html legend html lines html locator html matplot html mosaicplot html mtext html pairs html panel.smooth html par html persp html pie html plot html plot.dataframe html plot.default html plot.design html plot.factor html plot.formula html plot.table html plot.window html plot.xy html plothistogram html points html polygon html polypath html rasterImage html rect html rug html screen html segments html smoothScatter html spineplot html stars html stem html stripchart html strwidth html sunflowerplot html symbols html text html title html units html xspline html zAxis html converting help for package 'stats' AIC html ARMAacf html ARMAtoMA html Beta html Binomial html Cauchy html Chisquare html Distributions html Exponential html Fdist html GammaDist html Geometric html HoltWinters html Hypergeometric html IQR html KalmanLike html Logistic html Lognormal html Multinom html NLSstAsymptotic html NLSstClosestX html NLSstLfAsymptote html NLSstRtAsymptote html NegBinomial html Normal html Poisson html SSD html SSasymp html SSasympOff html SSasympOrig html SSbiexp html SSfol html SSfpl html SSgompertz html SSlogis html SSmicmen html SSweibull html SignRank html StructTS html TDist html Tukey html TukeyHSD html Uniform html Weibull html Wilcoxon html acf html acf2AR html add1 html addmargins html aggregate html alias html anova html anova.glm html anova.lm html anova.mlm html ansari.test html aov html approxfun html ar html ar.ols html arima html arima.sim html arima0 html as.hclust html asOneSidedFormula html ave html bandwidth html bartlett.test html binom.test html biplot html biplot.princomp html birthday html box.test html cancor html case.names html checkMFClasses html chisq.test html cmdscale html coef html complete.cases html confint html constrOptim html contrast html contrasts html convolve html cophenetic html cor html cor.test html cov.wt html cpgram html cutree html decompose html delete.response html dendrapply html dendrogram html density html deriv html deviance html df.residual html diffinv html dist html dummy.coef html ecdf html eff.aovlist html effects html embed html expand.model.frame html extractAIC html factanal html factor.scope html family html fft html filter html fisher.test html fitted.values html fivenum html fligner.test html formula html formula.nls html friedman.test html ftable html ftable.formula html getInitial html glm html glm.control html glm.summaries html hclust html heatmap html identify.hclust html influence.measures html integrate html interaction.plot html is.empty html isoreg html kernapply html kernel html kmeans html kruskal.test html ks.test html ksmooth html lag html lag.plot html line html listof html lm html lm.influence html lm.summaries html lmfit html loadings html loess html loess.control html logLik html loglin html lowess html ls.diag html ls.print html lsfit html mad html mahalanobis html make.link html makepredictcall html manova html mantelhaen.test html mauchly.test html mcnemar.test html median html medpolish html model.extract html model.frame html model.matrix html model.tables html monthplot html mood.test html na.action html na.contiguous html na.fail html nafns html naprint html nextn html nlm html nlminb html nls html nls.control html nobs html numericDeriv html offset html oneway.test html optim html optimize html order.dendrogram html p.adjust html pairwise.prop.test html pairwise.t.test html pairwise.table html pairwise.wilcox.test html plot.HoltWinters html plot.acf html plot.density html plot.isoreg html plot.lm html plot.ppr html plot.profile.nls html plot.spec html plot.stepfun html plot.ts html poisson.test html poly html power html power.anova.test html power.prop.test html power.t.test html pp.test html ppoints html ppr html prcomp html predict.HoltWinters html predict html predict.arima html predict.glm html predict.lm html predict.loess html predict.nls html predict.smooth.spline html preplot html princomp html print.power.htest html print.ts html printCoefmat html profile html profile.nls html proj html prop.test html prop.trend.test html qqnorm html quade.test html quantile html r2dtable html rWishart html read.ftable html rect.hclust html relevel html reorder.dendrogram html reorder.factor html replications html reshape html residuals html runmed html scatter.smooth html screeplot html sd html se.contrast html selfStart html setNames html shapiro.test html simulate html smooth html smooth.spline html smoothEnds html sortedXyData html spec.ar html spec.pgram html spec.taper html spectrum html splinefun html start html stat.anova html stats-defunct html stats-deprecated html stats-package html step html stepfun html stl html stlmethods html summary.aov html summary.glm html summary.lm html summary.manova html summary.nls html summary.princomp html supsmu html symnum html t.test html termplot html terms html terms.formula html terms.object html time html toeplitz html ts-methods html ts html ts.plot html ts.union html tsSmooth html tsdiag html tsp html uniroot html update html update.formula html var.test html varimax html vcov html weighted.mean html weighted.residuals html weights html wilcox.test html window html xtabs html zC html converting help for package 'datasets' AirPassengers html BJsales html BOD html ChickWeight html DNase html EuStockMarkets html Formaldehyde html HairEyeColor html Harman23.cor html Harman74.cor html Indometh html InsectSprays html JohnsonJohnson html LakeHuron html LifeCycleSavings html Loblolly html Nile html Orange html OrchardSprays html PlantGrowth html Puromycin html Theoph html Titanic html ToothGrowth html UCBAdmissions html UKDriverDeaths html UKLungDeaths html UKgas html USAccDeaths html USArrests html USJudgeRatings html USPersonalExpenditure html VADeaths html WWWusage html WorldPhones html ability.cov html airmiles html airquality html anscombe html attenu html attitude html austres html beavers html cars html chickwts html co2 html crimtab html datasets-package html discoveries html esoph html euro html eurodist html faithful html freeny html infert html iris html islands html lh html longley html lynx html morley html mtcars html nhtemp html nottem html npk html occupationalStatus html precip html presidents html pressure html quakes html randu html rivers html rock html sleep html stackloss html state html sunspot.month html sunspot.year html sunspots html swiss html treering html trees html uspop html volcano html warpbreaks html women html zCO2 html converting help for package 'methods' BasicClasses html Classes html Documentation html EmptyMethodsList-class html EnvironmentClass html GenericFunctions html LanguageClasses html LinearMethodsList-class html MethodDefinition-class html MethodSupport html MethodWithNext-class html Methods html MethodsList-class html MethodsList html NextMethod html ObjectsWithPackage-class html RClassUtils html RMethodUtils html S3Part html S4groupGeneric html SClassExtension-class html StructureClasses html TraceClasses html as html callGeneric html canCoerce html cbind2 html className html classRepresentation-class html classesToAM html dotsMethods html evalSource html findClass html findMethods html fixPrevious html genericFunction-class html getClass html getMethod html getPackageName html hasArg html implicitGeneric html inheritedSlotNames html initialize-methods html is html isSealedMethod html languageEl html localRefClass html method.skeleton html methodUtilities html methods-defunct html methods-deprecated html methods-package html new html nonStructure-class html promptClass html promptMethods html refClass html representation html selectSuperClasses html setClass html setClassUnion html setGeneric html setLoadActions html setMethod html setOldClass html setSClass html show html showMethods html signature-class html slot html stdRefClass html substituteDirect html testInheritedMethods html validObject html zBasicFunsList html converting help for package 'grid' Grid html absolute.size html arrow html calcStringMetric html current.viewport html dataViewport html depth html drawDetails html editDetails html explode html gEdit html gPath html getNames html gpar html grid-defunct html grid-internal html grid-package html grid.DLapply html grid.add html grid.bezier html grid.cap html grid.circle html grid.clip html grid.convert html grid.copy html grid.curve html grid.delay html grid.display.list html grid.draw html grid.edit html grid.force html grid.frame html grid.function html grid.get html grid.grab html grid.grep html grid.grill html grid.grob html grid.layout html grid.lines html grid.locator html grid.ls html grid.move.to html grid.newpage html grid.null html grid.pack html grid.path html grid.place html grid.plot.and.legend html grid.points html grid.polygon html grid.pretty html grid.raster html grid.record html grid.rect html grid.refresh html grid.remove html grid.reorder html grid.roundrect html grid.segments html grid.set html grid.show.layout html grid.show.viewport html grid.text html grid.xaxis html grid.xspline html grid.yaxis html grobName html grobWidth html grobX html legendGrob html makeContent html plotViewport html resolveRasterSize html showGrob html showViewport html stringWidth html unit html unit.c html unit.length html unit.pmin html unit.rep html valid.just html validDetails html viewport html viewports html vpPath html widthDetails html xDetails html xsplinePoints html converting help for package 'splines' asVector html backSpline html bs html interpSpline html ns html periodicSpline html polySpline html predict.bSpline html predict.bs html splineDesign html finding level-2 HTML links ... done Rd warning: /builddir/build/BUILD/R-3.1.2/src/library/splines/man/splineDesign.Rd:39: missing link 'sparseMatrix-class' splineKnots html splineOrder html splines-package html xyVector html converting help for package 'stats4' coef-methods html confint-methods html logLik-methods html mle-class html mle html plot-methods html profile-methods html profile.mle-class html show-methods html stats4-package html summary-methods html summary.mle-class html update-methods html vcov-methods html converting help for package 'tcltk' TclInterface html TkCommands html TkWidgetcmds html TkWidgets html tclServiceMode html tcltk-defunct html tcltk-package html tkProgressBar html tkStartGUI html tk_choose.dir html tk_choose.files html tk_messageBox html tk_select.list html tkpager html converting help for package 'compiler' compile html converting help for package 'parallel' RngStream html clusterApply html detectCores html makeCluster html parallel-package html splitIndices html children html mcaffinity html mcfork html mclapply html mcparallel html pvec html make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/Recommended' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library/Recommended' begin installing recommended package MASS * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/Rtmpl5tbnE/R.INSTALL7429f525b67/MASS/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c MASS.c -o MASS.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lqs.c -o lqs.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmpl5tbnE/R.INSTALL7429f525b67/MASS/src' installing to /builddir/build/BUILD/R-3.1.2/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MASS' finding HTML links ... done Aids2 html Animals html Boston html Cars93 html Cushings html DDT html GAGurine html Insurance html MASS-internal html Melanoma html Null html OME html Pima.tr html Rabbit html Rubber html SP500 html Sitka html Sitka89 html Skye html Traffic html UScereal html UScrime html VA html abbey html accdeaths html addterm html anorexia html anova.negbin html area html bacteria html bandwidth.nrd html bcv html beav1 html beav2 html biopsy html birthwt html boxcox html cabbages html caith html cats html cement html chem html con2tr html confint html contr.sdif html coop html corresp html cov.rob html cov.trob html cpus html crabs html deaths html denumerate html dose.p html drivers html dropterm html eagles html epil html eqscplot html farms html fgl html fitdistr html forbes html fractions html galaxies html gamma.dispersion html gamma.shape.glm html gehan html genotype html geyser html gilgais html ginv html glm.convert html glm.nb html glmmPQL html hills html hist.scott html housing html huber html hubers html immer html isoMDS html kde2d html lda html ldahist html leuk html lm.gls html lm.ridge html loglm html loglm1 html logtrans html lqs html mammals html mca html mcycle html menarche html michelson html minn38 html motors html muscle html mvrnorm html negative.binomial html newcomb html nlschools html npk html npr1 html oats html painters html pairs.lda html parcoord html petrol html phones html plot.lda html plot.mca html plot.profile html polr html predict.glmmPQL html predict.lda html predict.lqs html predict.mca html predict.qda html profile.glm html qda html quine html rational html renumerate html rlm html rms.curv html rnegbin html road html rotifer html sammon html ships html shoes html shrimp html shuttle html snails html stdres html steam html stepAIC html stormer html studres html summary.loglm html summary.negbin html summary.rlm html survey html synth.tr html theta.md html topo html truehist html ucv html waders html whiteside html width.SJ html write.matrix html wtloss html ** building package indices ** testing if installed package can be loaded * DONE (MASS) Making 'packages.html' ... done begin installing recommended package lattice * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpyH8rKn/R.INSTALL744532d6ba07/lattice/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c threeDplot.c -o threeDplot.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpyH8rKn/R.INSTALL744532d6ba07/lattice/src' installing to /builddir/build/BUILD/R-3.1.2/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lattice' finding HTML links ... done Lattice html Rows html axis.default html banking html barchart.table html barley html cloud html draw.colorkey html draw.key html environmental html ethanol html histogram html interaction html lattice.options html latticeParseFormula html level.colors html levelplot html llines html lset html make.groups html melanoma html oneway html packet.panel.default html panel.axis html panel.barchart html panel.bwplot html panel.cloud html panel.densityplot html panel.dotplot html panel.functions html panel.histogram html panel.levelplot html panel.loess html panel.number html panel.pairs html panel.parallel html panel.qqmath html panel.qqmathline html panel.smoothScatter html panel.spline html panel.stripplot html panel.superpose html panel.violin html panel.xyplot html prepanel.default html prepanel.functions html print.trellis html qq html qqmath html rfs html shingles html simpleKey html simpleTheme html singer html splom html strip.default html tmd html trellis.device html trellis.object html trellis.par.get html update.trellis html utilities.3d html xyplot html xyplot.ts html ** building package indices ** testing if installed package can be loaded * DONE (lattice) Making 'packages.html' ... done begin installing recommended package Matrix * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c CHMfactor.c -o CHMfactor.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Csparse.c -o Csparse.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c TMatrix_as.c -o TMatrix_as.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Tsparse.c -o Tsparse.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Mutils.c -o Mutils.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chm_common.c -o chm_common.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cs.c -o cs.o cs.c: In function 'cs_qr': cs.c:1408:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] csi i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai, ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cs_utils.c -o cs_utils.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dense.c -o dense.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgCMatrix.c -o dgCMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgTMatrix.c -o dgTMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgeMatrix.c -o dgeMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dpoMatrix.c -o dpoMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dppMatrix.c -o dppMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dsCMatrix.c -o dsCMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dsyMatrix.c -o dsyMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dspMatrix.c -o dspMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dtCMatrix.c -o dtCMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dtTMatrix.c -o dtTMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dtrMatrix.c -o dtrMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dtpMatrix.c -o dtpMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c factorizations.c -o factorizations.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ldense.c -o ldense.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lgCMatrix.c -o lgCMatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sparseQR.c -o sparseQR.o sparseQR.c: In function 'sparseQR_resid_fitted': sparseQR.c:111:9: warning: 'd_a' may be used uninitialized in this function [-Wmaybe-uninitialized] d_a[0] = m;/* -> @Dim is ok; @Dimnames (i.e. colnames) still are */ \ ^ sparseQR.c:83:41: note: 'd_a' was declared here m = ydims[0], n = ydims[1], M = V->m, *d_a; \ ^ sparseQR.c:176:5: note: in expansion of macro 'INIT_sparseQR_' INIT_sparseQR_ ^ In file included from Mutils.h:14:0, from sparseQR.h:4, from sparseQR.c:1: /builddir/build/BUILD/R-3.1.2/include/Rdefines.h:141:35: warning: 'aa' may be used uninitialized in this function [-Wmaybe-uninitialized] #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) ^ sparseQR.c:79:15: note: 'aa' was declared here SEXP ans, aa; \ ^ sparseQR.c:176:5: note: in expansion of macro 'INIT_sparseQR_' INIT_sparseQR_ ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c abIndex.c -o abIndex.o make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[5]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD/Lib' make[5]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD/Source' make[5]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD/Source' make[5]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/SuiteSparse_config' make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/SuiteSparse_config' make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD' ( cd Lib ; make ) make[5]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD/Lib' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_add.c -o cholmod_add.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_band.c -o cholmod_band.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o In file included from ../Core/cholmod_change_factor.c:116:0: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ In file included from ../Core/cholmod_change_factor.c:118:0: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] Int nsuper, xsize, ssize ; ^ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^ ../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^ ../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ ../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; ^ ../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^ ../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_common.c -o cholmod_common.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_copy.c -o cholmod_copy.o ../Core/cholmod_copy.c: In function 'cholmod_copy': ../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^ ../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_dense.c -o cholmod_dense.o In file included from ../Core/cholmod_dense.c:48:0: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ In file included from ../Core/cholmod_dense.c:50:0: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ In file included from ../Core/cholmod_dense.c:52:0: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ ../Core/cholmod_dense.c: In function 'cholmod_eye': ../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, n, nz ; ^ ../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_error.c -o cholmod_error.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_sparse.c -o cholmod_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_copy_sparse': ../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] Int p, pend, j, ncol, packed, nzmax, nz, xtype ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_transpose.c -o cholmod_transpose.o In file included from ../Core/cholmod_transpose.c:124:0: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:126:0: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:128:0: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:131:0: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:133:0: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ In file included from ../Core/cholmod_transpose.c:136:0: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_triplet.c -o cholmod_triplet.o In file included from ../Core/cholmod_triplet.c:108:0: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ In file included from ../Core/cholmod_triplet.c:110:0: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ In file included from ../Core/cholmod_triplet.c:112:0: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/cholmod_triplet.c: In function 'cholmod_triplet_to_sparse': ../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] Int i, j, p, k, stype, nrow, ncol, nz, ok ; ^ ../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Core/cholmod_version.c -o cholmod_version.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Check/cholmod_check.c -o cholmod_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; ^ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; ^ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; ^ ../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable] count, precise, init_print, ilast, lnz, head, tail, jprev, plast, ^ ../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, ^ ../Check/cholmod_check.c: In function 'check_factor.constprop': ../Check/cholmod_check.c:86:2: warning: 'psxend' may be used uninitialized in this function [-Wmaybe-uninitialized] (Common->print_function) (format, arg) ; \ ^ ../Check/cholmod_check.c:1508:7: note: 'psxend' was declared here ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; ^ ../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized] jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Check/cholmod_read.c -o cholmod_read.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Check/cholmod_write.c -o cholmod_write.o ../Check/cholmod_write.c: In function 'cholmod_write_sparse': ../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_analyze_p2': ../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, ^ ../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^ ../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o ../Cholesky/cholmod_factorize.c: In function 'cholmod_factorize_p': ../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:164:0: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:166:0: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:168:0: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ In file included from ../Cholesky/cholmod_rowfac.c:172:0: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:174:0: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:176:0: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o In file included from ../Cholesky/cholmod_solve.c:66:0: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^ In file included from ../Cholesky/cholmod_solve.c:69:0: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:46:0: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ In file included from ../MatrixOps/cholmod_sdmult.c:48:0: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ In file included from ../MatrixOps/cholmod_sdmult.c:50:0: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Modify/cholmod_updown.c -o cholmod_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_updown_mask': ../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:78:0: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ In file included from ../Supernodal/cholmod_super_numeric.c:80:0: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:28:0: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ In file included from ../Supernodal/cholmod_super_solve.c:30:0: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] Int totsize ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o In file included from ../Core/cholmod_change_factor.c:116:0: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ In file included from ../Core/cholmod_change_factor.c:118:0: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] Int nsuper, xsize, ssize ; ^ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^ ../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^ ../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ ../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; ^ ../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^ ../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o ../Core/cholmod_copy.c: In function 'cholmod_l_copy': ../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^ ../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o In file included from ../Core/cholmod_dense.c:48:0: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ In file included from ../Core/cholmod_dense.c:50:0: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ In file included from ../Core/cholmod_dense.c:52:0: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^ ../Core/cholmod_dense.c: In function 'cholmod_l_eye': ../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, n, nz ; ^ ../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_l_copy_sparse': ../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] Int p, pend, j, ncol, packed, nzmax, nz, xtype ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o In file included from ../Core/cholmod_transpose.c:124:0: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:126:0: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:128:0: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:131:0: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^ In file included from ../Core/cholmod_transpose.c:133:0: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ In file included from ../Core/cholmod_transpose.c:136:0: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o In file included from ../Core/cholmod_triplet.c:108:0: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ In file included from ../Core/cholmod_triplet.c:110:0: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ In file included from ../Core/cholmod_triplet.c:112:0: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^ ../Core/cholmod_triplet.c: In function 'cholmod_l_triplet_to_sparse': ../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] Int i, j, p, k, stype, nrow, ncol, nz, ok ; ^ ../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; ^ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; ^ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; ^ ../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable] count, precise, init_print, ilast, lnz, head, tail, jprev, plast, ^ ../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, ^ ../Check/cholmod_check.c: In function 'check_factor.constprop': ../Check/cholmod_check.c:86:2: warning: 'psxend' may be used uninitialized in this function [-Wmaybe-uninitialized] (Common->print_function) (format, arg) ; \ ^ ../Check/cholmod_check.c:1508:7: note: 'psxend' was declared here ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; ^ ../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized] jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o ../Check/cholmod_write.c: In function 'cholmod_l_write_sparse': ../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_l_analyze_p2': ../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, ^ ../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^ ../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o ../Cholesky/cholmod_factorize.c: In function 'cholmod_l_factorize_p': ../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:164:0: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:166:0: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:168:0: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ In file included from ../Cholesky/cholmod_rowfac.c:172:0: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:174:0: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^ In file included from ../Cholesky/cholmod_rowfac.c:176:0: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o In file included from ../Cholesky/cholmod_solve.c:66:0: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^ In file included from ../Cholesky/cholmod_solve.c:69:0: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:46:0: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ In file included from ../MatrixOps/cholmod_sdmult.c:48:0: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^ In file included from ../MatrixOps/cholmod_sdmult.c:50:0: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_l_updown_mask': ../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:78:0: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ In file included from ../Supernodal/cholmod_super_numeric.c:80:0: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:28:0: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ In file included from ../Supernodal/cholmod_super_solve.c:30:0: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_l_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] Int totsize ; ^ ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD' ( cd Source ; make lib ) make[5]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD/Source' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c colamd_global.c -o colamd_global.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c colamd.c -o colamd.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[5]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD' ( cd Source ; make lib ) make[5]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD/Source' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDINT -c amd_global.c -o amd_i_global.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[5]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/SuiteSparse_config' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -DNTIMER -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/SuiteSparse_config' gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src' installing to /builddir/build/BUILD/R-3.1.2/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'image' from package 'graphics' in package 'Matrix' Creating a generic function for 'solve' from package 'base' in package 'Matrix' Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'determinant' from package 'base' in package 'Matrix' Creating a generic function for 'update' from package 'stats' in package 'Matrix' Creating a generic function for 'as.vector' from package 'base' in package 'Matrix' Creating a generic function for 't' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'as.matrix' from package 'base' in package 'Matrix' Creating a generic function for 'as.array' from package 'base' in package 'Matrix' Creating a generic function for 'head' from package 'utils' in package 'Matrix' Creating a generic function for 'tail' from package 'utils' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'mean' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'isSymmetric' from package 'base' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'chol' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' Creating a generic function for 'all.equal' from package 'base' in package 'Matrix' Creating a generic function for 'diff' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'qr' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'print' from package 'base' in package 'Matrix' Creating a generic function for 'summary' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'format' from package 'base' in package 'Matrix' Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' ** help *** installing help indices converting help for package 'Matrix' finding HTML links ... done BunchKaufman-methods html CAex html CHMfactor-class html Cholesky-class html Cholesky html CsparseMatrix-class html Diagonal html Hilbert html KNex html KhatriRao html LU-class html Matrix-class html Matrix html MatrixFactorization-class html RsparseMatrix-class html Schur-class html Schur html SparseM-conv html Subassign-methods html TsparseMatrix-class html USCounties html Xtrct-methods html abIndex-class html Rd warning: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/man/abIndex-class.Rd:81: missing file link 'Ops' abIseq html all-methods html all.equal-methods html atomicVector-class html band html bandSparse html bdiag html cBind html chol html chol2inv-methods html colSums html compMatrix-class html condest html dMatrix-class html ddenseMatrix-class html ddiMatrix-class html denseMatrix-class html dgCMatrix-class html dgRMatrix-class html dgTMatrix-class html dgeMatrix-class html diagU2N html diagonalMatrix-class html dpoMatrix-class html drop0 html dsCMatrix-class html dsRMatrix-class html dsparseMatrix-class html dsyMatrix-class html dtCMatrix-class html dtRMatrix-class-def html dtpMatrix-class html dtrMatrix-class html expand html expm html externalFormats html facmul html forceSymmetric html formatSparseM html generalMatrix-class html graph2T html image-methods html Rd warning: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/man/image-methods.Rd:48: missing file link 'panel.levelplot.raster' indMatrix-class html index-class html invPerm html is.na-methods html is.null.DN html isSymmetric-methods html isTriangular html kronecker-methods html ldenseMatrix-class html ldiMatrix-class html lgeMatrix-class html lsparseMatrix-classes html lsyMatrix-class html ltrMatrix-class html lu html matrix-products html Rd warning: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/man/matrix-products.Rd:325: missing file link 'tcrossprod' nMatrix-class html ndenseMatrix-class html nearPD html ngeMatrix-class html nnzero html norm html nsparseMatrix-classes html nsyMatrix-class html ntrMatrix-class html number-class html pMatrix-class html printSpMatrix html qr-methods html rankMatrix html rcond html rep2abI html replValue-class html rleDiff-class html rsparsematrix html solve-methods html spMatrix html sparse.model.matrix html sparseLU-class html sparseMatrix-class html sparseMatrix html sparseQR-class html sparseVector-class html sparseVector html symmetricMatrix-class html symmpart html triangularMatrix-class html unpack html unused-classes html updown html ** building package indices Loading required package: Matrix ** installing vignettes 'Comparisons.Rnw' 'Design-issues.Rnw' 'Intro2Matrix.Rnw' 'Introduction.Rnw' 'sparseModels.Rnw' ** testing if installed package can be loaded * DONE (Matrix) Making 'packages.html' ... done begin installing recommended package nlme * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/Rtmp1NDUT1/R.INSTALL7663575c7d0b/nlme/src' gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c chol.f -o chol.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c corStruct.c -o corStruct.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gnls.c -o gnls.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c matrix.c -o matrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c nlOptimizer.c -o nlOptimizer.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c nlme.c -o nlme.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c nlmefit.c -o nlmefit.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c nls.c -o nls.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pdMat.c -o pdMat.o gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c rs.f -o rs.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmp1NDUT1/R.INSTALL7663575c7d0b/nlme/src' installing to /builddir/build/BUILD/R-3.1.2/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nlme' finding HTML links ... done ACF html ACF.gls html ACF.lme html Alfalfa html Assay html BodyWeight html Cefamandole html Coef html Covariate html Covariate.varFunc html Dialyzer html Dim html Dim.corSpatial html Dim.corStruct html Dim.pdMat html Earthquake html Extract.pdMat html Fatigue html Gasoline html Glucose html Glucose2 html Gun html IGF html Initialize html Initialize.corStruct html Initialize.glsStruct html Initialize.lmeStruct html Initialize.reStruct html Initialize.varFunc html LDEsysMat html Machines html MathAchSchool html MathAchieve html Matrix html Matrix.pdMat html Matrix.reStruct html Meat html Milk html Muscle html Names html Names.formula html Names.pdBlocked html Names.pdMat html Names.reStruct html Nitrendipene html Oats html Orthodont html Ovary html Oxboys html Oxide html PBG html Phenobarb html Pixel html Quinidine html Rail html RatPupWeight html Relaxin html Remifentanil html Soybean html Spruce html Tetracycline1 html Tetracycline2 html VarCorr html Variogram html Variogram.corExp html Variogram.corGaus html Variogram.corLin html Variogram.corRatio html Variogram.corSpatial html Variogram.corSpher html Variogram.default html Variogram.gls html Variogram.lme html Wafer html Wheat html Wheat2 html allCoef html anova.gls html anova.lme html as.matrix.corStruct html as.matrix.pdMat html as.matrix.reStruct html asOneFormula html asTable html augPred html balancedGrouped html bdf html coef.corStruct html coef.gnls html coef.lmList html coef.lme html coef.modelStruct html coef.pdMat html coef.reStruct html coef.varFunc html collapse html collapse.groupedData html compareFits html comparePred html corAR1 html corARMA html corCAR1 html corClasses html corCompSymm html corExp html corFactor html corFactor.corStruct html corGaus html corLin html corMatrix html corMatrix.corStruct html corMatrix.pdMat html corMatrix.reStruct html corNatural html corRatio html corSpatial html corSpher html corSymm html ergoStool html fdHess html fitted.glsStruct html fitted.gnlsStruct html fitted.lmList html fitted.lme html fitted.lmeStruct html fitted.nlmeStruct html fixed.effects html fixef.lmList html formula.pdBlocked html formula.pdMat html formula.reStruct html gapply html getCovariate html getCovariate.corStruct html getCovariate.data.frame html getCovariate.varFunc html getCovariateFormula html getData html getData.gls html getData.lmList html getData.lme html getGroups html getGroups.corStruct html getGroups.data.frame html getGroups.gls html getGroups.lmList html getGroups.lme html getGroups.varFunc html getGroupsFormula html getResponse html getResponseFormula html getVarCov html gls-internal html gls html glsControl html glsObject html glsStruct html gnls html gnlsControl html gnlsObject html gnlsStruct html groupedData html gsummary html intervals html intervals.gls html intervals.lmList html intervals.lme html isBalanced html isInitialized html lmList html lmList.groupedData html lme html lme.groupedData html lme.lmList html lmeControl html lmeObject html lmeStruct html logDet html logDet.corStruct html logDet.pdMat html logDet.reStruct html logLik.corStruct html logLik.glsStruct html logLik.gnls html logLik.gnlsStruct html logLik.lmList html logLik.lme html logLik.lmeStruct html logLik.reStruct html logLik.varFunc html model.matrix.reStruct html needUpdate html needUpdate.modelStruct html nlme html nlme.nlsList html nlmeControl html nlmeObject html nlmeStruct html nlsList html nlsList.selfStart html pairs.compareFits html pairs.lmList html pairs.lme html pdBlocked html pdClasses html pdCompSymm html pdConstruct html pdConstruct.pdBlocked html pdDiag html pdFactor html pdFactor.reStruct html pdIdent html pdLogChol html pdMat html pdMatrix html pdMatrix.reStruct html pdNatural html pdSymm html phenoModel html plot.ACF html plot.Variogram html plot.augPred html plot.compareFits html plot.gls html plot.intervals.lmList html plot.lmList html plot.lme html plot.nffGroupedData html plot.nfnGroupedData html plot.nmGroupedData html plot.ranef.lmList html plot.ranef.lme html pooledSD html predict.gls html predict.gnls html predict.lmList html predict.lme html predict.nlme html print.summary.pdMat html print.varFunc html qqnorm.gls html qqnorm.lme html quinModel html random.effects html ranef.lmList html ranef.lme html reStruct html recalc html recalc.corStruct html recalc.modelStruct html recalc.reStruct html recalc.varFunc html residuals.gls html residuals.glsStruct html residuals.gnlsStruct html residuals.lmList html residuals.lme html residuals.lmeStruct html residuals.nlmeStruct html simulate.lme html solve.pdMat html solve.reStruct html splitFormula html summary.corStruct html summary.gls html summary.lmList html summary.lme html summary.modelStruct html summary.nlsList html summary.pdMat html summary.varFunc html update.modelStruct html update.varFunc html varClasses html varComb html varConstPower html varExp html varFixed html varFunc html varIdent html varPower html varWeights html varWeights.glsStruct html varWeights.lmeStruct html ** building package indices ** testing if installed package can be loaded * DONE (nlme) Making 'packages.html' ... done begin installing recommended package survival * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpJXcr5F/R.INSTALL769afcb0977/survival/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agexact.c -o agexact.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agfit4.c -o agfit4.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agfit5.c -o agfit5.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agmart.c -o agmart.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agmart2.c -o agmart2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agscore.c -o agscore.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agsurv3.c -o agsurv3.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agsurv4.c -o agsurv4.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c agsurv5.c -o agsurv5.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chinv2.c -o chinv2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chinv3.c -o chinv3.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cholesky2.c -o cholesky2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cholesky3.c -o cholesky3.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chsolve2.c -o chsolve2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chsolve3.c -o chsolve3.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c concordance1.c -o concordance1.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cox_Rcallback.c -o cox_Rcallback.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxcount1.c -o coxcount1.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxdetail.c -o coxdetail.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxexact.c -o coxexact.o coxexact.c: In function 'coxexact': coxexact.c:303:22: warning: 'sstart' may be used uninitialized in this function [-Wmaybe-uninitialized] d0 = coxd0(ndeath, nrisk, score+sstart, dmem0, maxdeath); ^ coxexact.c:296:22: warning: 'nrisk' may be used uninitialized in this function [-Wmaybe-uninitialized] nrisk++; ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxfit5.c -o coxfit5.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxfit6.c -o coxfit6.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxmart.c -o coxmart.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxmart2.c -o coxmart2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxph_wtest.c -o coxph_wtest.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxsafe.c -o coxsafe.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxscho.c -o coxscho.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxscore.c -o coxscore.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dmatrix.c -o dmatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c doloop.c -o doloop.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c msurv.c -o msurv.o msurv.c: In function 'msurv': msurv.c:16:12: warning: unused variable 'ntime' [-Wunused-variable] int ntime, nstate, n; ^ msurv.c:50:42: warning: 'k2' may be used uninitialized in this function [-Wmaybe-uninitialized] while (eflag==1 && i2>=0 && etime[k2] >=time) { ^ msurv.c:54:15: warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] i2--; ^ msurv.c:55:16: warning: 'isort' may be used uninitialized in this function [-Wmaybe-uninitialized] k2 = isort[i2]; ^ msurv.c:50:42: warning: 'etime' may be used uninitialized in this function [-Wmaybe-uninitialized] while (eflag==1 && i2>=0 && etime[k2] >=time) { ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pyears1.c -o pyears1.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pyears2.c -o pyears2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pyears3b.c -o pyears3b.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pystep.c -o pystep.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survConcordance.c -o survConcordance.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survdiff2.c -o survdiff2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survfit4.c -o survfit4.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survfitci.c -o survfitci.o survfitci.c: In function 'survfitci': survfitci.c:30:14: warning: 'umat' may be used uninitialized in this function [-Wmaybe-uninitialized] double **umat; /* per subject leverage at this time point */ ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survpenal.c -o survpenal.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survreg6.c -o survreg6.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survreg7.c -o survreg7.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survregc1.c -o survregc1.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c survregc2.c -o survregc2.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o init.o msurv.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpJXcr5F/R.INSTALL769afcb0977/survival/src' installing to /builddir/build/BUILD/R-3.1.2/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'survival' finding HTML links ... done Surv html aareg html agreg.fit html aml html anova.coxph html attrassign html basehaz html bladder html cch html cgd html clogit html cluster html colon html cox.zph html coxph html coxph.control html coxph.detail html coxph.object html coxph.wtest html dsurvreg html flchain html frailty html heart html is.ratetable html kidney html lines.survfit html logan html lung html mgus html model.frame.coxph html model.matrix.coxph html nwtco html ovarian html pbc html pbcseq html plot.aareg html plot.cox.zph html plot.survfit html predict.coxph html predict.survreg html print.aareg html print.summary.coxph html print.summary.survexp html print.summary.survfit html print.survfit html pspline html pyears html quantile.survfit html ratetable html ratetableDate html rats html rats2 html residuals.coxph html residuals.survreg html ridge html stanford2 html strata html summary.aareg html summary.coxph html summary.survexp html summary.survfit html survConcordance html survSplit html survdiff html survexp html survexp.fit html survexp.us html survfit html survfit.coxph html survfit.formula html survfit.object html survfitcoxph.fit html survival-internal html survobrien html survreg html survreg.control html survreg.distributions html survreg.object html survregDtest html tcut html tobin html untangle.specials html uspop2 html veteran html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) Making 'packages.html' ... done begin installing recommended package boot * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'boot' finding HTML links ... done EEF.profile html Imp.Estimates html abc.ci html acme html aids html aircondit html amis html aml html beaver html bigcity html boot-practicals html boot html boot.array html boot.ci html brambles html breslow html calcium html cane html capability html catsM html cav html cd4 html cd4.nested html censboot html channing html claridge html cloth html co.transfer html coal html control html corr html cum3 html cv.glm html darwin html dogs html downs.bc html ducks html empinf html envelope html exp.tilt html fir html freq.array html frets html glm.diag html glm.diag.plots html gravity html hirose html imp.weights html inv.logit html islay html jack.after.boot html k3.linear html linear.approx html lines.saddle.distn html logit html manaus html melanoma html motor html neuro html nitrofen html nodal html norm.ci html nuclear html paulsen html plot.boot html poisons html polar html print.boot html print.bootci html print.saddle.distn html print.simplex html remission html saddle html saddle.distn html saddle.distn.object html salinity html simplex html simplex.object html smooth.f html sunspot html survival html tau html tilt.boot html tsboot html tuna html urine html var.linear html wool html ** building package indices ** testing if installed package can be loaded * DONE (boot) Making 'packages.html' ... done begin installing recommended package cluster * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c clara.c -o clara.o gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c daisy.f -o daisy.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dysta.f -o dysta.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fanny.c -o fanny.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c mona.f -o mona.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pam.c -o pam.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sildist.c -o sildist.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c spannel.c -o spannel.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c twins.c -o twins.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/src' installing to /builddir/build/BUILD/R-3.1.2/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cluster' finding HTML links ... done agnes html agnes.object html agriculture html animals html bannerplot html chorSub html clara html clara.object html clusGap html clusplot.default html Rd warning: /tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/man/clusplot.default.Rd:208: missing file link 'cov.mve' clusplot.partition html cluster-internal html coef.hclust html daisy html diana html dissimilarity.object html ellipsoidhull html Rd warning: /tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/man/ellipsoidhull.Rd:36: missing file link 'cov.mve' Rd warning: /tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/man/ellipsoidhull.Rd:86: missing file link 'cov.mve' fanny html fanny.object html flower html lower.to.upper.tri.inds html mona html mona.object html pam html pam.object html partition.object html plantTraits html plot.agnes html Rd warning: /tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/man/plot.agnes.Rd:73: missing file link 'plot.dendrogram' plot.diana html plot.mona html plot.partition html pltree html pltree.twins html pluton html predict.ellipsoid html print.agnes html print.clara html print.diana html print.dissimilarity html Rd warning: /tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/man/print.dissimilarity.Rd:27: missing file link 'print.dist' print.fanny html print.mona html print.pam html ruspini html silhouette html sizeDiss html summary.agnes html summary.clara html summary.diana html summary.mona html summary.pam html twins.object html volume.ellipsoid html votes.repub html xclara html ** building package indices ** testing if installed package can be loaded * DONE (cluster) Making 'packages.html' ... done begin installing recommended package codetools * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'codetools' finding HTML links ... done checkUsage html codetools html findGlobals html showTree html ** building package indices ** testing if installed package can be loaded * DONE (codetools) Making 'packages.html' ... done begin installing recommended package foreign * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/Rtmps2T4cp/R.INSTALL778e5e083162/foreign/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c R_systat.c -o R_systat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rdbfread.c -o Rdbfread.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c Rdbfwrite.c -o Rdbfwrite.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c SASxport.c -o SASxport.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c avl.c -o avl.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dbfopen.c -o dbfopen.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c file-handle.c -o file-handle.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c format.c -o format.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c minitab.c -o minitab.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pfm-read.c -o pfm-read.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sfm-read.c -o sfm-read.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c spss.c -o spss.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stataread.c -o stataread.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmps2T4cp/R.INSTALL778e5e083162/foreign/src' installing to /builddir/build/BUILD/R-3.1.2/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foreign' finding HTML links ... done lookup.xport html read.S html read.arff html read.dbf html read.dta html read.epiinfo html read.mtp html read.octave html read.spss html read.ssd html read.systat html read.xport html write.arff html write.dbf html write.dta html write.foreign html ** building package indices ** testing if installed package can be loaded * DONE (foreign) Making 'packages.html' ... done begin installing recommended package KernSmooth * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/Rtmp6iGrXK/R.INSTALL77ce119a6327/KernSmooth/src' gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c blkest.f -o blkest.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c cp.f -o cp.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dgedi.f -o dgedi.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dgefa.f -o dgefa.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c dgesl.f -o dgesl.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c linbin.f -o linbin.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c linbin2D.f -o linbin2D.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c locpoly.f -o locpoly.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c rlbin.f -o rlbin.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c sdiag.f -o sdiag.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gfortran -m32 -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -I/usr/lib/gfortran/modules -c sstdiag.f -o sstdiag.o Warning: Nonexistent include directory "/usr/lib/gfortran/modules" gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmp6iGrXK/R.INSTALL77ce119a6327/KernSmooth/src' installing to /builddir/build/BUILD/R-3.1.2/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'KernSmooth' finding HTML links ... done bkde html bkde2D html bkfe html dpih html dpik html dpill html locpoly html ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) Making 'packages.html' ... done begin installing recommended package rpart * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpwBq3oM/R.INSTALL78084e824044/rpart/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c anova.c -o anova.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c anovapred.c -o anovapred.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c branch.c -o branch.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bsplit.c -o bsplit.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c choose_surg.c -o choose_surg.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fix_cp.c -o fix_cp.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c free_tree.c -o free_tree.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gini.c -o gini.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c graycode.c -o graycode.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c insert_split.c -o insert_split.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c make_cp_list.c -o make_cp_list.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c make_cp_table.c -o make_cp_table.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mysort.c -o mysort.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c nodesplit.c -o nodesplit.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c partition.c -o partition.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c poisson.c -o poisson.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pred_rpart.c -o pred_rpart.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c print_tree.c -o print_tree.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpart.c -o rpart.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpart_callback.c -o rpart_callback.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpartexp.c -o rpartexp.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpartexp2.c -o rpartexp2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpcountup.c -o rpcountup.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpmatrix.c -o rpmatrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rundown.c -o rundown.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rundown2.c -o rundown2.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c surrogate.c -o surrogate.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c usersplit.c -o usersplit.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c xpred.c -o xpred.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c xval.c -o xval.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpwBq3oM/R.INSTALL78084e824044/rpart/src' installing to /builddir/build/BUILD/R-3.1.2/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rpart' finding HTML links ... done car.test.frame html car90 html cu.summary html kyphosis html labels.rpart html meanvar.rpart html na.rpart html path.rpart html plot.rpart html plotcp html post.rpart html predict.rpart html print.rpart html printcp html prune.rpart html residuals.rpart html rpart-internal html rpart html rpart.control html rpart.exp html rpart.object html rsq.rpart html snip.rpart html solder html stagec html summary.rpart html text.rpart html xpred.rpart html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) Making 'packages.html' ... done begin installing recommended package class * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpVfUAut/R.INSTALL787b287dfb54/class/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c class.c -o class.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o class.so class.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpVfUAut/R.INSTALL787b287dfb54/class/src' installing to /builddir/build/BUILD/R-3.1.2/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'class' finding HTML links ... done SOM html batchSOM html condense html knn html knn.cv html knn1 html lvq1 html lvq2 html lvq3 html lvqinit html lvqtest html multiedit html olvq1 html reduce.nn html somgrid html ** building package indices ** testing if installed package can be loaded * DONE (class) Making 'packages.html' ... done begin installing recommended package nnet * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpaMs1Id/R.INSTALL789460142bb/nnet/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c nnet.c -o nnet.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o nnet.so nnet.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpaMs1Id/R.INSTALL789460142bb/nnet/src' installing to /builddir/build/BUILD/R-3.1.2/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nnet' finding HTML links ... done class.ind html multinom html nnet.Hess html nnet html predict.nnet html which.is.max html ** building package indices ** testing if installed package can be loaded * DONE (nnet) Making 'packages.html' ... done begin installing recommended package spatial * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpHCqfOp/R.INSTALL78ad5459a982/spatial/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c krc.c -o krc.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pps.c -o pps.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/RtmpHCqfOp/R.INSTALL78ad5459a982/spatial/src' installing to /builddir/build/BUILD/R-3.1.2/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spatial' finding HTML links ... done Kaver html Kenvl html Kfn html Psim html SSI html Strauss html anova.trls html correlogram html expcov html ppgetregion html ppinit html pplik html ppregion html predict.trls html prmat html semat html surf.gls html surf.ls html trls.influence html trmat html variogram html ** building package indices ** testing if installed package can be loaded * DONE (spatial) Making 'packages.html' ... done begin installing recommended package mgcv * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/src' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c coxph.c -o coxph.o coxph.c: In function 'coxlpl': coxph.c:381:27: warning: 'd1b_p' may be used uninitialized in this function [-Wmaybe-uninitialized] R_chk_free(d1gamma_p);R_chk_free(d1b_p); ^ coxph.c:380:5: warning: 'd1eta' may be used uninitialized in this function [-Wmaybe-uninitialized] R_chk_free(d1eta);R_chk_free(d1gamma); ^ coxph.c:381:5: warning: 'd1gamma_p' may be used uninitialized in this function [-Wmaybe-uninitialized] R_chk_free(d1gamma_p);R_chk_free(d1b_p); ^ coxph.c:380:23: warning: 'd1gamma' may be used uninitialized in this function [-Wmaybe-uninitialized] R_chk_free(d1eta);R_chk_free(d1gamma); ^ coxph.c:196:6: warning: 'd2ldA_p' may be used uninitialized in this function [-Wmaybe-uninitialized] *d2ldA_p; ^ coxph.c:194:50: warning: 'd1A_p' may be used uninitialized in this function [-Wmaybe-uninitialized] *d1gamma_p,*d1eta,xx,xx0,xx1,xx2,xx3,*d1b_p,*d1A_p, ^ coxph.c:195:33: warning: 'd2b_p' may be used uninitialized in this function [-Wmaybe-uninitialized] *d2eta,*d2gamma,*d2gamma_p,*d2b_p, ^ coxph.c:291:23: warning: 'd2gamma_p' may be used uninitialized in this function [-Wmaybe-uninitialized] d2gamma_p[off] += d2gamma[i+ off * *n]; ^ coxph.c:195:13: warning: 'd2gamma' may be used uninitialized in this function [-Wmaybe-uninitialized] *d2eta,*d2gamma,*d2gamma_p,*d2b_p, ^ coxph.c:386:5: warning: 'd2eta' may be used uninitialized in this function [-Wmaybe-uninitialized] R_chk_free(d2eta);R_chk_free(d2gamma); ^ coxph.c:348:36: warning: 'A_p' may be used uninitialized in this function [-Wmaybe-uninitialized] d2H[l + off * *p] += xx3 * (A_p[l + *p *l] * d1gamma_p[k] + ^ coxph.c:334:67: warning: 'b_p' may be used uninitialized in this function [-Wmaybe-uninitialized] d1H[off] += xx1 * (d1b_p[k + *p *m] * b_p[l] + b_p[k] * d1b_p[l + *p *m]) - ^ gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gdi.c -o gdi.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c init.c -o init.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c magic.c -o magic.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mat.c -o mat.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c matrix.c -o matrix.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mgcv.c -o mgcv.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c misc.c -o misc.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mvn.c -o mvn.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qp.c -o qp.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c soap.c -o soap.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sparse-smooth.c -o sparse-smooth.o gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c tprs.c -o tprs.o gcc -m32 -std=gnu99 -shared -L/builddir/build/BUILD/R-3.1.2/lib -Wl,-z,relro -o mgcv.so coxph.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/builddir/build/BUILD/R-3.1.2/lib -lR make[3]: Leaving directory '/tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/src' installing to /builddir/build/BUILD/R-3.1.2/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mgcv' finding HTML links ... done Beta html Predict.matrix html Predict.matrix.cr.smooth html Predict.matrix.soap.film html Rrank html Tweedie html anova.gam html bam html Rd warning: /tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/man/bam.Rd:13: missing file link 'parallel' Rd warning: /tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/man/bam.Rd:120: missing file link 'parLapply' Rd warning: /tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/man/bam.Rd:165: missing file link 'makeForkCluster' bam.update html cSplineDes html choose.k html columb html concurvity html coxph html exclude.too.far html extract.lme.cov html family.mgcv html fix.family.link html fixDependence html formXtViX html formula.gam html fs.test html full.score html gam html gam.check html gam.control html gam.convergence html gam.fit html gam.fit3 html gam.models html gam.outer html gam.scale html gam.selection html gam.side html gam.vcomp html gam2objective html gamObject html gamSim html gamm html gaulss html get.var html in.out html inSide html influence.gam html initial.sp html interpret.gam html ldTweedie html linear.functional.terms html logLik.gam html ls.size html magic html magic.post.proc html mgcv-FAQ html mgcv-package html mgcv-parallel html Rd warning: /tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/man/mgcv-parallel.Rd:7: missing file link 'parallel' model.matrix.gam html mono.con html mroot html mvn html negbin html new.name html notExp html notExp2 html null.space.dimension html ocat html pcls html pdIdnot html pdTens html pen.edf html place.knots html plot.gam html polys.plot html predict.bam html Rd warning: /tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/man/predict.bam.Rd:71: missing file link 'parLapply' predict.gam html print.gam html qq.gam html rTweedie html random.effects html residuals.gam html rig html s html scat html slanczos html smooth.construct html smooth.construct.ad.smooth.spec html smooth.construct.cr.smooth.spec html smooth.construct.ds.smooth.spec html smooth.construct.fs.smooth.spec html smooth.construct.mrf.smooth.spec html smooth.construct.ps.smooth.spec html smooth.construct.re.smooth.spec html smooth.construct.so.smooth.spec html smooth.construct.sos.smooth.spec html smooth.construct.t2.smooth.spec html smooth.construct.tensor.smooth.spec html smooth.construct.tp.smooth.spec html smooth.terms html smoothCon html sp.vcov html spasm.construct html step.gam html summary.gam html t2 html te html tensor.prod.model.matrix html uniquecombs html vcov.gam html vis.gam html ziP html ziplss html ** building package indices ** testing if installed package can be loaded * DONE (mgcv) Making 'packages.html' ... done make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/Recommended' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library/Recommended' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2' configuring Java ... Java interpreter : /usr/bin/java Java version : 1.8.0_20 Java home path : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.20-12.b26.fc21.i386/jre Java compiler : not present Java headers gen.: Java archive tool: trying to compile and link a JNI progam detected JNI cpp flags : detected JNI linker flags : -L$(JAVA_HOME)/lib/i386/server -ljvm make[2]: Entering directory '/tmp/Rjavareconf.AHH1DH' gcc -m32 -std=gnu99 -I/builddir/build/BUILD/R-3.1.2/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c conftest.c -o conftest.o conftest.c:1:17: fatal error: jni.h: No such file or directory #include ^ compilation terminated. /builddir/build/BUILD/R-3.1.2/etc/Makeconf:133: recipe for target 'conftest.o' failed make[2]: *** [conftest.o] Error 1 make[2]: Leaving directory '/tmp/Rjavareconf.AHH1DH' Unable to compile a JNI program JAVA_HOME : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.20-12.b26.fc21.i386/jre Java library path: JNI cpp flags : JNI linker flags : Updating Java configuration in /builddir/build/BUILD/R-3.1.2 Done. make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2' + cd src/nmath/standalone + make (cd ../../include; make Rmath.h) make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/include' Copying source files make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/nmath/standalone' gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mlutils.c -o mlutils.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c d1mach.c -o d1mach.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c i1mach.c -o i1mach.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fmax2.c -o fmax2.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fmin2.c -o fmin2.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fprec.c -o fprec.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fround.c -o fround.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sign.c -o sign.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fsign.c -o fsign.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c imax2.c -o imax2.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c imin2.c -o imin2.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c log1p.c -o log1p.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c expm1.c -o expm1.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gammalims.c -o gammalims.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bd0.c -o bd0.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gamma.c -o gamma.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lgamma.c -o lgamma.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c beta.c -o beta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lbeta.c -o lbeta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c polygamma.c -o polygamma.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cospi.c -o cospi.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.o bessel_i.c: In function 'bessel_i': bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_i.c: In function 'bessel_i_ex': bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.o bessel_j.c: In function 'bessel_j': bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_j.c: In function 'bessel_j_ex': bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.o bessel_k.c: In function 'bessel_k': bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_k.c: In function 'bessel_k_ex': bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.o bessel_y.c: In function 'bessel_y': bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_y.c: In function 'bessel_y_ex': bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c choose.c -o choose.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c snorm.c -o snorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sexp.c -o sexp.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgamma.c -o dgamma.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pgamma.c -o pgamma.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qgamma.c -o qgamma.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rgamma.c -o rgamma.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dbeta.c -o dbeta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pbeta.c -o pbeta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qbeta.c -o qbeta.o qbeta.c: In function 'qbeta': qbeta.c:58:14: warning: variable 'warned' set but not used [-Wunused-but-set-variable] Rboolean warned = FALSE; ^ gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbeta.c -o rbeta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dunif.c -o dunif.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c punif.c -o punif.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qunif.c -o qunif.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c runif.c -o runif.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnorm.c -o dnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnorm.c -o pnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnorm.c -o qnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnorm.c -o rnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plnorm.c -o plnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c df.c -o df.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pf.c -o pf.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qf.c -o qf.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rf.c -o rf.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnf.c -o dnf.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dt.c -o dt.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pt.c -o pt.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qt.c -o qt.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rt.c -o rt.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnt.c -o dnt.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dchisq.c -o dchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pchisq.c -o pchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qchisq.c -o qchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rchisq.c -o rchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dbinom.c -o dbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pbinom.c -o pbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qbinom.c -o qbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbinom.c -o rbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dexp.c -o dexp.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pexp.c -o pexp.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qexp.c -o qexp.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rexp.c -o rexp.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgeom.c -o dgeom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pgeom.c -o pgeom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qgeom.c -o qgeom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rgeom.c -o rgeom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dhyper.c -o dhyper.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c phyper.c -o phyper.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qhyper.c -o qhyper.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rhyper.c -o rhyper.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dpois.c -o dpois.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ppois.c -o ppois.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qpois.c -o qpois.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpois.c -o rpois.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dweibull.c -o dweibull.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pweibull.c -o pweibull.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qweibull.c -o qweibull.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rweibull.c -o rweibull.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dlogis.c -o dlogis.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plogis.c -o plogis.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qlogis.c -o qlogis.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rlogis.c -o rlogis.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnf.c -o pnf.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnt.c -o pnt.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnf.c -o qnf.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnt.c -o qnt.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ptukey.c -o ptukey.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qtukey.c -o qtukey.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c toms708.c -o toms708.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c wilcox.c -o wilcox.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c signrank.c -o signrank.o gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c std_unif.c -o std_unif.o ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/nmath/standalone' gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c mlutils.c -o mlutils.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c d1mach.c -o d1mach.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c i1mach.c -o i1mach.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fmax2.c -o fmax2.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fmin2.c -o fmin2.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fprec.c -o fprec.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fround.c -o fround.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sign.c -o sign.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c fsign.c -o fsign.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c imax2.c -o imax2.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c imin2.c -o imin2.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c log1p.c -o log1p.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c expm1.c -o expm1.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gammalims.c -o gammalims.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bd0.c -o bd0.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gamma.c -o gamma.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lgamma.c -o lgamma.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c beta.c -o beta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c lbeta.c -o lbeta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c polygamma.c -o polygamma.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c cospi.c -o cospi.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.lo bessel_i.c: In function 'bessel_i': bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:77:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_i.c: In function 'bessel_i_ex': bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:122:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.lo bessel_j.c: In function 'bessel_j': bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:75:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_j.c: In function 'bessel_j_ex': bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:118:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.lo bessel_k.c: In function 'bessel_k': bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:71:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_k.c: In function 'bessel_k_ex': bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:108:2: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.lo bessel_y.c: In function 'bessel_y': bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:82:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] bessel_y.c: In function 'bessel_y_ex': bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:127:6: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c choose.c -o choose.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c snorm.c -o snorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c sexp.c -o sexp.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgamma.c -o dgamma.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pgamma.c -o pgamma.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qgamma.c -o qgamma.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rgamma.c -o rgamma.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dbeta.c -o dbeta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pbeta.c -o pbeta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qbeta.c -o qbeta.lo qbeta.c: In function 'qbeta': qbeta.c:58:14: warning: variable 'warned' set but not used [-Wunused-but-set-variable] Rboolean warned = FALSE; ^ gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbeta.c -o rbeta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dunif.c -o dunif.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c punif.c -o punif.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qunif.c -o qunif.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c runif.c -o runif.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnorm.c -o dnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnorm.c -o pnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnorm.c -o qnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnorm.c -o rnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plnorm.c -o plnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c df.c -o df.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pf.c -o pf.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qf.c -o qf.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rf.c -o rf.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnf.c -o dnf.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dt.c -o dt.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pt.c -o pt.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qt.c -o qt.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rt.c -o rt.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnt.c -o dnt.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dchisq.c -o dchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pchisq.c -o pchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qchisq.c -o qchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rchisq.c -o rchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dbinom.c -o dbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pbinom.c -o pbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qbinom.c -o qbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rbinom.c -o rbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dexp.c -o dexp.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pexp.c -o pexp.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qexp.c -o qexp.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rexp.c -o rexp.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dgeom.c -o dgeom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pgeom.c -o pgeom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qgeom.c -o qgeom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rgeom.c -o rgeom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dhyper.c -o dhyper.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c phyper.c -o phyper.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qhyper.c -o qhyper.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rhyper.c -o rhyper.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dpois.c -o dpois.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ppois.c -o ppois.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qpois.c -o qpois.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rpois.c -o rpois.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dweibull.c -o dweibull.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pweibull.c -o pweibull.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qweibull.c -o qweibull.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rweibull.c -o rweibull.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dlogis.c -o dlogis.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c plogis.c -o plogis.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qlogis.c -o qlogis.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c rlogis.c -o rlogis.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnf.c -o pnf.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c pnt.c -o pnt.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnf.c -o qnf.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qnt.c -o qnt.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c ptukey.c -o ptukey.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c qtukey.c -o qtukey.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c toms708.c -o toms708.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c wilcox.c -o wilcox.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c signrank.c -o signrank.lo gcc -m32 -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -c std_unif.c -o std_unif.lo gcc -m32 -std=gnu99 -shared -fopenmp -Wl,-z,relro -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/nmath/standalone' + make pdf make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for 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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) Underfull \hbox (badness 4595) in paragraph at lines 40--43 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [3] [4] Underfull \hbox (badness 1960) in paragraph at lines 137--145 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 148--155 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 291--295 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] Underfull \hbox (badness 3977) in paragraph at lines 375--378 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 505--511 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1094--1097 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] Underfull \hbox (badness 4072) in paragraph at lines 1302--1308 []\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m /n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I t is guar-an-teed that [22] [23] [24] [25] [26] [27] [28] Overfull \hbox (26.88089pt too wide) in paragraph at lines 1808--1808 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 1993--1995 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3446--3448 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 2970) in paragraph at lines 4030--4036 []\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for [62] [63] [64] [65] [66] [67] [68] [69] Underfull \hbox (badness 2521) in paragraph at lines 4589--4591 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] Underfull \hbox (badness 2096) in paragraph at lines 5798--5811 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [87] [88] [89] [90] Underfull \hbox (badness 10000) in paragraph at lines 6120--6123 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [91] [92] Underfull \hbox (badness 2635) in paragraph at lines 6284--6290 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move Underfull \hbox (badness 2173) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er-ated by Underfull \hbox (badness 4441) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o m-mended) when writ-ing it Underfull \hbox (badness 1895) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or [93] Underfull \hbox (badness 3568) in paragraph at lines 6345--6352 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [94] [95] Underfull \vbox (badness 10000) has occurred while \output is active [96] [97] [98] [99] [100] [101] [102] Underfull \hbox (badness 4595) in paragraph at lines 6950--6953 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [103] Underfull \hbox (badness 2351) in paragraph at lines 7008--7011 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [104] [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 7258--7269 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [108] Underfull \hbox (badness 4479) in paragraph at lines 7330--7339 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7330--7339 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] Underfull \hbox (badness 1394) in paragraph at lines 8894--8899 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [130] [131] [132] [133] [134] Underfull \hbox (badness 1052) in paragraph at lines 9231--9236 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9231--9236 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 9369--9373 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198 5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi ki / IEEE _ [137] [138] [139] [140] [141] [142] Underfull \hbox (badness 2150) in paragraph at lines 9760--9763 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 9774--9782 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 9815--9822 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 4569) in paragraph at lines 10854--10858 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 10854--10858 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [158] [159] [160] [161] [162] [163] [164] Underfull \hbox (badness 2698) in paragraph at lines 11398--11407 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11398--11407 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 2253) in paragraph at lines 12350--12352 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [178] [179] Underfull \hbox (badness 1565) in paragraph at lines 12411--12415 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and Underfull \hbox (badness 10000) in paragraph at lines 12454--12456 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [180] [181] Underfull \hbox (badness 1466) in paragraph at lines 12592--12595 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [182] [183] Underfull \hbox (badness 10000) in paragraph at lines 12700--12704 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12711--12714 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / [184] [185] [186] Underfull \hbox (badness 3965) in paragraph at lines 12958--12962 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] Underfull \hbox (badness 4429) in paragraph at lines 13675--13678 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [198] Underfull \hbox (badness 10000) in paragraph at lines 13761--13763 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 13767--13771 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [199] Underfull \hbox (badness 2790) in paragraph at lines 13806--13809 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1 0 meth-ods: use [200] [201] [202] [203] [204] [205] [206] [207] Underfull \hbox (badness 2452) in paragraph at lines 14377--14381 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 14377--14381 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [208] [209] Underfull \hbox (badness 1092) in paragraph at lines 14528--14533 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [210] [211] [212] [213] Underfull \hbox (badness 6741) in paragraph at lines 14776--14780 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [214] [215] [216] [217] Underfull \hbox (badness 1867) in paragraph at lines 15082--15089 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [218] [219] [220] [221] Underfull \vbox (badness 10000) has occurred while \output is active [222] [223] Underfull \hbox (badness 3679) in paragraph at lines 15449--15451 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [224] [225] [226] [227] [228] [229] Underfull \hbox (badness 1478) in paragraph at lines 15929--15932 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [230] [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 16174--16176 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [233] [234] [235] [236] [237] [238] [239] [240] Underfull \hbox (badness 1442) in paragraph at lines 16708--16710 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [241] Underfull \hbox (badness 2452) in paragraph at lines 16800--16816 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [242] [243] [244] [245] [246] [247] Underfull \hbox (badness 1248) in paragraph at lines 17207--17210 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4 /m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 , [248] [249] [250] [251] Underfull \hbox (badness 4739) in paragraph at lines 17460--17462 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 18364--18368 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 18364--18368 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [266] Underfull \hbox (badness 1509) in paragraph at lines 18499--18506 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1354) in paragraph at lines 18499--18506 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and [267] Underfull \hbox (badness 1014) in paragraph at lines 18515--18520 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \hbox (badness 1264) in paragraph at lines 19229--19234 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [278] [279] [280] [281] [282] [283] [284] [285] [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 19977--19979 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] Underfull \hbox (badness 1655) in paragraph at lines 20965--20971 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion, [304] [305] Underfull \hbox (badness 1484) in paragraph at lines 21126--21134 []\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less the OS's de-fault has been [306] [307] [308] [309] Underfull \hbox (badness 2790) in paragraph at lines 21397--21400 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 21397--21400 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [310] [311] [312] [313] Underfull \hbox (badness 1194) in paragraph at lines 21676--21679 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [314] [315] [316] Underfull \hbox (badness 10000) in paragraph at lines 21877--21880 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 21877--21880 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] Underfull \hbox (badness 1199) in paragraph at lines 22925--22931 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 22925--22931 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [332] [333] [334] [335] [336] [337] [338] [339] Underfull \hbox (badness 1038) in paragraph at lines 23464--23473 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 23474--23477 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 23493--23495 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [340] Underfull \hbox (badness 10000) in paragraph at lines 23559--23569 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 23570--23576 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 23583--23588 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 23593--23595 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [341] [342] Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\ T1/ptm/m/n/10 ' or the Eu-ro-pean mir- Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 \T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d e"\T1/ptm/m/n/10 '. Can be set by [343] Underfull \hbox (badness 10000) in paragraph at lines 23845--23848 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 23869--23871 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 7203) in paragraph at lines 23897--23900 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 2735) in paragraph at lines 23907--23914 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der the CRAN OS X build), Underfull \hbox (badness 10000) in paragraph at lines 23907--23914 \T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 23916--23923 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 23916--23923 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 23916--23923 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 23916--23923 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [344] [345] [346] [347] [348] Underfull \hbox (badness 10000) in paragraph at lines 24227--24231 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 24227--24231 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [349] [350] [351] [352] Underfull \hbox (badness 1735) in paragraph at lines 24545--24549 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [353] [354] [355] [356] [357] [358] [359] [360] Underfull \hbox (badness 2726) in paragraph at lines 25040--25043 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] Underfull \hbox (badness 1052) in paragraph at lines 25855--25860 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] Underfull \hbox (badness 1533) in paragraph at lines 26583--26586 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [383] [384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28234--28238 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 28234--28238 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 28257--28259 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 1655) in paragraph at lines 28802--28804 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] Underfull \hbox (badness 10000) in paragraph at lines 29470--29473 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [425] [426] [427] Underfull \hbox (badness 2302) in paragraph at lines 29681--29688 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [428] [429] Underfull \hbox (badness 2261) in paragraph at lines 29834--29839 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [430] Underfull \hbox (badness 10000) in paragraph at lines 29861--29867 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 10000) in paragraph at lines 29937--29942 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \vbox (badness 10000) has occurred while \output is active [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] Underfull \hbox (badness 1072) in paragraph at lines 32707--32711 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 32712--32716 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 32740--32746 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 32740--32746 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 32740--32746 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [471] Underfull \hbox (badness 3343) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [472] [473] [474] [475] Underfull \hbox (badness 10000) in paragraph at lines 33049--33055 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1152) in paragraph at lines 33049--33055 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] Underfull \hbox (badness 3333) in paragraph at lines 34770--34775 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 1472) in paragraph at lines 35377--35380 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] Underfull \hbox (badness 2671) in paragraph at lines 36039--36042 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [521] [522] [523] [524] [525] Underfull \hbox (badness 10000) in paragraph at lines 36443--36446 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [526] [527] Underfull \hbox (badness 10000) in paragraph at lines 36564--36568 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [528] Underfull \hbox (badness 10000) in paragraph at lines 36626--36630 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] Underfull \hbox (badness 1990) in paragraph at lines 37841--37849 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 37841--37849 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [546] [547] [548] [549] [550] Underfull \hbox (badness 1515) in paragraph at lines 38113--38118 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [551] [552] [553] Underfull \hbox (badness 1917) in paragraph at lines 38343--38350 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [554] [555] [556] [557] [558] [559] [560] [561] Underfull \hbox (badness 3668) in paragraph at lines 38915--38917 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [562] Underfull \hbox (badness 2401) in paragraph at lines 39020--39024 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [563] [564] [565] Underfull \hbox (badness 2111) in paragraph at lines 39189--39194 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 6542) in paragraph at lines 39205--39210 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [566] [567] [568] [569] [570] [571] [572] Underfull \hbox (badness 10000) in paragraph at lines 39639--39644 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 39639--39644 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [573] Underfull \hbox (badness 5417) in paragraph at lines 39729--39733 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [574] Underfull \hbox (badness 10000) in paragraph at lines 39790--39794 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [575]) (./compiler-pkg.tex [576] Chapter 2. [577] [578] [579]) (./datasets-pkg.tex [580] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] Overfull \vbox (13.87083pt too high) has occurred while \output is active [624] Underfull \vbox (badness 1721) has occurred while \output is active [625] [626] Overfull \vbox (12.25539pt too high) has occurred while \output is active [627] [628] Overfull \vbox (17.12102pt too high) has occurred while \output is active [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] [639] Overfull \vbox (10.49593pt too high) has occurred while \output is active [640] Overfull \vbox (15.49593pt too high) has occurred while \output is active [641] Underfull \hbox (badness 1325) in paragraph at lines 3926--3929 []\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net / [642] [643] [644] [645] [646] [647] [648] [649] [650] Underfull \vbox (badness 10000) has occurred while \output is active [651] [652] [653] [654]) (./grDevices-pkg.tex Chapter 4. [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] Underfull \hbox (badness 5175) in paragraph at lines 1058--1060 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [671] [672] [673] Underfull \hbox (badness 1852) in paragraph at lines 1255--1258 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [674] [675] [676] Underfull \hbox (badness 1490) in paragraph at lines 1461--1466 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [677] Underfull \hbox (badness 2698) in paragraph at lines 1515--1518 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [678] Underfull \hbox (badness 10000) in paragraph at lines 1584--1588 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [679] [680] [681] [682] Underfull \hbox (badness 1325) in paragraph at lines 1867--1877 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [683] [684] Underfull \hbox (badness 10000) in paragraph at lines 1972--1974 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [685] [686] Underfull \hbox (badness 6758) in paragraph at lines 2133--2136 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [687] [688] [689] [690] [691] [692] [693] [694] Underfull \hbox (badness 10000) in paragraph at lines 2650--2651 Underfull \vbox (badness 10000) has occurred while \output is active [695] [696] [697] [698] [699] [700] Underfull \hbox (badness 1152) in paragraph at lines 3088--3090 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [701] [702] [703] [704] [705] Underfull \hbox (badness 2856) in paragraph at lines 3409--3412 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3423--3425 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [706] [707] Underfull \hbox (badness 1173) in paragraph at lines 3539--3549 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] Underfull \hbox (badness 1067) in paragraph at lines 4239--4246 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [718] [719] Underfull \hbox (badness 5231) in paragraph at lines 4400--4402 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 http : / / partners . adobe . com / public / [720] Underfull \hbox (badness 1789) in paragraph at lines 4477--4479 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [721] Underfull \hbox (badness 1377) in paragraph at lines 4527--4532 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues Underfull \hbox (badness 2671) in paragraph at lines 4554--4562 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as [722] Underfull \hbox (badness 1418) in paragraph at lines 4603--4610 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4611--4620 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4611--4620 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4621--4623 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [723] [724] Underfull \hbox (badness 1057) in paragraph at lines 4732--4737 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4792--4794 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [725] [726] Underfull \hbox (badness 2035) in paragraph at lines 4916--4925 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4916--4925 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4916--4925 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [727] [728] Underfull \hbox (badness 6775) in paragraph at lines 4984--4992 \T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Underfull \hbox (badness 3000) in paragraph at lines 4984--4992 \T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . com / pub / examples / nutshell / cjkv / Underfull \hbox (badness 7344) in paragraph at lines 5003--5005 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [729] [730] Underfull \hbox (badness 1546) in paragraph at lines 5123--5131 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [731] Underfull \hbox (badness 1648) in paragraph at lines 5200--5204 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [732] [733] [734] [735] [736] [737] Underfull \hbox (badness 10000) in paragraph at lines 5623--5626 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [738] [739] [740] [741] [742] [743] Underfull \hbox (badness 1189) in paragraph at lines 6019--6021 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [744] [745] Underfull \hbox (badness 10000) in paragraph at lines 6117--6119 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [746] [747] [748] [749] Underfull \hbox (badness 3780) in paragraph at lines 6408--6414 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [750] [751] Underfull \hbox (badness 2680) in paragraph at lines 6604--6606 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [752] [753] [754]) (./graphics-pkg.tex Chapter 5. [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [765] [766] [767] [768] Underfull \vbox (badness 10000) has occurred while \output is active [769] [770] [771] [772] [773] Underfull \hbox (badness 4634) in paragraph at lines 1246--1249 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] Underfull \hbox (badness 1009) in paragraph at lines 2277--2284 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \vbox (badness 10000) has occurred while \output is active [811] [812] [813] [814] Underfull \hbox (badness 1867) in paragraph at lines 3903--3907 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 1924) in paragraph at lines 4354--4359 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4383--4386 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [822] [823] [824] [825] [826] Underfull \hbox (badness 10000) in paragraph at lines 4727--4733 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4727--4733 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [827] [828] Underfull \hbox (badness 10000) in paragraph at lines 4857--4860 [829 ] Underfull \hbox (badness 10000) in paragraph at lines 4918--4920 [830 ] [831] Underfull \hbox (badness 10000) in paragraph at lines 5111--5113 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [832] Underfull \vbox (badness 10000) has occurred while \output is active [833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6515--6516 [][] [853 ] [854] Underfull \vbox (badness 10000) has occurred while \output is active [855] [856] [857] [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 1048) in paragraph at lines 7224--7229 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [864] [865] Underfull \hbox (badness 1038) in paragraph at lines 7340--7343 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] Underfull \hbox (badness 6691) in paragraph at lines 8558--8561 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8561--8563 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [885]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8643 \HeaderA{units}{Graphical Units}{units} [886] [887] [888] [889]) (./grid-pkg.tex [890] Chapter 6. [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [897] [898] [899] [900] [901] [902] [903] [904] [905] Underfull \hbox (badness 4279) in paragraph at lines 972--981 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] Underfull \hbox (badness 1067) in paragraph at lines 4342--4345 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [959] [960] [961] [962] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] Underfull \hbox (badness 10000) in paragraph at lines 5856--5862 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [982] [983] [984] [985] [986] [987] [988] [989] Underfull \hbox (badness 7649) in paragraph at lines 6326--6329 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [990] [991] [992] [993]) (./methods-pkg.tex [994] Chapter 7. [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] Underfull \hbox (badness 2237) in paragraph at lines 1432--1434 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 10000) in paragraph at lines 2028--2033 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2028--2033 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] Underfull \hbox (badness 10000) in paragraph at lines 2628--2631 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1029] [1030] Underfull \hbox (badness 1132) in paragraph at lines 2768--2772 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2800--2805 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1031] [1032] [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1102) in paragraph at lines 3308--3310 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1038] [1039] [1040] [1041] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Underfull \hbox (badness 1436) in paragraph at lines 4550--4553 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4579--4585 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4579--4585 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1055] [1056] [1057] [1058] [1059] [1060] [1061] Underfull \vbox (badness 10000) has occurred while \output is active [1062] [1063] Underfull \hbox (badness 1092) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5299--5302 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1064] [1065] [1066] [1067] [1068] Underfull \hbox (badness 1087) in paragraph at lines 5619--5624 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1069] [1070] [1071] Underfull \hbox (badness 2221) in paragraph at lines 5845--5850 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] Underfull \vbox (badness 10000) has occurred while \output is active [1080] [1081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6707 \aliasA{S4}{S3Part}{S4} [1082] [1083] [1084] [1085]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.6983 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.6985 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.6986 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.6988 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.6989 \aliasA{Summary}{S4groupGeneric}{Summary} Underfull \hbox (badness 2050) in paragraph at lines 7050--7054 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1086] [1087] [1088] Underfull \hbox (badness 1286) in paragraph at lines 7235--7237 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] Underfull \hbox (badness 2894) in paragraph at lines 9563--9567 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 / Underfull \hbox (badness 1852) in paragraph at lines 9642--9646 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1120] [1121] [1122] [1123]) (./parallel-pkg.tex [1124] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 3386) in paragraph at lines 1246--1249 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1143] [1144] [1145]) (./splines-pkg.tex [1146] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159]) (./stats-pkg.tex [1160] Chapter 10. [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 1412) in paragraph at lines 843--845 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 2503) in paragraph at lines 1324--1327 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1181] [1182] Underfull \hbox (badness 10000) in paragraph at lines 1503--1507 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 3965) in paragraph at lines 2163--2165 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1193] [1194] [1195] [1196] [1197] Underfull \hbox (badness 3965) in paragraph at lines 2495--2497 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] Underfull \hbox (badness 2503) in paragraph at lines 3308--3311 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 3989) in paragraph at lines 4528--4535 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] Underfull \hbox (badness 2932) in paragraph at lines 5144--5146 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1237] [1238] [1239] [1240] Underfull \hbox (badness 1142) in paragraph at lines 5385--5397 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1241] [1242] Underfull \hbox (badness 2503) in paragraph at lines 5524--5528 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1243] Underfull \hbox (badness 1168) in paragraph at lines 5585--5590 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1244] [1245] [1246] [1247] [1248] [1249] [1250] Underfull \hbox (badness 8132) in paragraph at lines 6027--6032 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1251] [1252] [1253] [1254] Underfull \hbox (badness 7081) in paragraph at lines 6297--6300 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6301--6303 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1255] [1256] [1257] [1258] [1259] Underfull \vbox (badness 10000) has occurred while \output is active [1260] [1261] [1262] [1263] [1264] [1265] [1266] Underfull \hbox (badness 10000) in paragraph at lines 7109--7112 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1267] [1268] Underfull \hbox (badness 10000) in paragraph at lines 7246--7249 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tp : / / cran . r-[]project . org / web / views / [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] Underfull \hbox (badness 2626) in paragraph at lines 8721--8724 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1291] [1292] Underfull \hbox (badness 2503) in paragraph at lines 8821--8825 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1293] [1294] [1295] [1296] [1297] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9155--9157 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] Underfull \hbox (badness 1019) in paragraph at lines 9821--9824 []\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/ 10 http : / / dlmf . [1308] [1309] [1310] Underfull \hbox (badness 4518) in paragraph at lines 10081--10086 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1311] [1312] [1313] [1314] [1315] Underfull \hbox (badness 2142) in paragraph at lines 10423--10426 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10442--10445 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1316] Underfull \hbox (badness 1708) in paragraph at lines 10504--10507 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1694) in paragraph at lines 10883--10886 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1322] Underfull \hbox (badness 1867) in paragraph at lines 10902--10911 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1323] [1324] [1325] [1326] [1327] [1328] [1329]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i gnored \relax l.11349 \aliasA{hat}{influence.measures}{hat} [1330] Underfull \hbox (badness 1484) in paragraph at lines 11471--11473 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] Underfull \hbox (badness 4441) in paragraph at lines 12024--12026 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12031--12033 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1340] [1341] [1342] [1343] [1344] Underfull \hbox (badness 2894) in paragraph at lines 12365--12369 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 4518) in paragraph at lines 13059--13064 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] Underfull \hbox (badness 4518) in paragraph at lines 13706--13711 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] Underfull \hbox (badness 2503) in paragraph at lines 14906--14910 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1384] [1385] [1386] [1387] [1388] [1389] [1390] Underfull \hbox (badness 1418) in paragraph at lines 15415--15421 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] Underfull \hbox (badness 2359) in paragraph at lines 17041--17043 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1416] Underfull \vbox (badness 10000) has occurred while \output is active [1417] Underfull \vbox (badness 10000) has occurred while \output is active [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] Underfull \hbox (badness 1377) in paragraph at lines 17952--17957 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 17957--17960 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 17970--17974 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to [1430] Underfull \hbox (badness 2662) in paragraph at lines 17978--17982 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1431] [1432] Underfull \vbox (badness 10000) has occurred while \output is active [1433] [1434] [1435] [1436] [1437] [1438] [1439] Underfull \hbox (badness 1337) in paragraph at lines 18594--18597 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 5563) in paragraph at lines 19320--19322 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19323--19326 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1452] [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 2503) in paragraph at lines 19689--19692 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 19716--19718 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 10000) in paragraph at lines 20692--20698 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1337) in paragraph at lines 22007--22013 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] Underfull \hbox (badness 10000) in paragraph at lines 22800--22803 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] Underfull \hbox (badness 10000) in paragraph at lines 23375--23378 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1514] Underfull \hbox (badness 3690) in paragraph at lines 23426--23430 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1515] [1516] [1517] [1518] Underfull \hbox (badness 7667) in paragraph at lines 23692--23694 []\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je ct which is co-ercible to one by [1519] [1520] [1521] Underfull \hbox (badness 3439) in paragraph at lines 23895--23901 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 10000) in paragraph at lines 24443--24448 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] Underfull \hbox (badness 3514) in paragraph at lines 25459--25464 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1545] Underfull \hbox (badness 3514) in paragraph at lines 25521--25526 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1546] Underfull \hbox (badness 3514) in paragraph at lines 25578--25583 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1547] Underfull \hbox (badness 3514) in paragraph at lines 25639--25645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1548] [1549] [1550] [1551] Underfull \hbox (badness 3514) in paragraph at lines 25852--25857 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1552] Underfull \hbox (badness 3514) in paragraph at lines 25908--25913 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 25965--25970 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1553] Underfull \hbox (badness 3514) in paragraph at lines 26020--26025 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1554] Underfull \hbox (badness 6691) in paragraph at lines 26089--26094 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] Underfull \hbox (badness 10000) in paragraph at lines 26611--26614 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26611--26614 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] Underfull \hbox (badness 5431) in paragraph at lines 27217--27219 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1572] [1573] [1574] [1575] Underfull \hbox (badness 5431) in paragraph at lines 27427--27430 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1576] [1577] [1578] [1579] Underfull \hbox (badness 1337) in paragraph at lines 27739--27743 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1580] [1581] Underfull \hbox (badness 10000) in paragraph at lines 27856--27859 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1582] [1583] [1584] Underfull \hbox (badness 1616) in paragraph at lines 28039--28042 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] Underfull \hbox (badness 10000) in paragraph at lines 29161--29165 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1603] [1604] Underfull \vbox (badness 10000) has occurred while \output is active [1605] [1606] [1607] Underfull \hbox (badness 1337) in paragraph at lines 29524--29528 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 30008--30012 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] Underfull \hbox (badness 5161) in paragraph at lines 30101--30103 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 10000) in paragraph at lines 30465--30470 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1622] [1623] [1624]) (./stats4-pkg.tex Chapter 11. [1625] [1626] [1627] [1628] [1629] [1630]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1631] [1632] [1633]) (./tcltk-pkg.tex [1634] Chapter 12. [1635] [1636] [1637] [1638] [1639] [1640] [1641] Underfull \vbox (badness 10000) has occurred while \output is active [1642] Underfull \hbox (badness 1546) in paragraph at lines 649--656 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 3375) in paragraph at lines 1390--1393 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1654]) (./tools-pkg.tex Chapter 13. [1655] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1656] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1657] [1658] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1659] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1660] [1661] [1662] [1663] [1664] [1665] [1666] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1667] [1668] [1669] [1670] Underfull \hbox (badness 1635) in paragraph at lines 1048--1050 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1671] Underfull \hbox (badness 4441) in paragraph at lines 1117--1125 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- Underfull \hbox (badness 1014) in paragraph at lines 1137--1139 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies [1672] Underfull \hbox (badness 10000) in paragraph at lines 1166--1169 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1166--1169 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1673] [1674] Underfull \hbox (badness 10000) in paragraph at lines 1294--1296 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1675] [1676] Underfull \hbox (badness 7981) in paragraph at lines 1464--1468 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1470--1472 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1677] [1678] [1679] [1680]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1666 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1681] Underfull \hbox (badness 5726) in paragraph at lines 1792--1797 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1792--1797 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 7981) in paragraph at lines 2183--2189 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1689] [1690] [1691] [1692] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2442. [1693] [1694] [1695] Underfull \hbox (badness 1424) in paragraph at lines 2679--2681 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 10000) in paragraph at lines 3369--3371 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 1838) in paragraph at lines 3706--3712 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3706--3712 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1711] Underfull \hbox (badness 5726) in paragraph at lines 3786--3791 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3786--3791 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1712] [1713] Underfull \hbox (badness 1688) in paragraph at lines 3928--3940 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1714] [1715] [1716] [1717]) (./utils-pkg.tex [1718] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1719] [1720] [1721] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1722] [1723] [1724] [1725] [1726] Underfull \hbox (badness 10000) in paragraph at lines 536--542 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 536--542 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1727] [1728] Underfull \hbox (badness 5847) in paragraph at lines 647--653 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 647--653 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as Underfull \hbox (badness 3861) in paragraph at lines 715--720 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] Underfull \hbox (badness 1371) in paragraph at lines 1298--1300 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 2057) in paragraph at lines 1747--1749 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1744] [1745] Underfull \hbox (badness 10000) in paragraph at lines 1841--1843 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1746] Underfull \hbox (badness 5189) in paragraph at lines 1931--1933 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1747] Underfull \vbox (badness 10000) has occurred while \output is active [1748] [1749] Underfull \hbox (badness 1661) in paragraph at lines 2146--2153 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- [1750] Underfull \hbox (badness 1990) in paragraph at lines 2163--2166 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] Underfull \hbox (badness 1430) in paragraph at lines 3155--3161 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 2837) in paragraph at lines 3155--3161 \T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t he plat-form and scheme, but set-ting Underfull \hbox (badness 1231) in paragraph at lines 3195--3201 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.3967 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.3967 ...mat Unordered and Ordered Lists}{format} [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] Underfull \hbox (badness 1371) in paragraph at lines 4915--4917 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1791] [1792] Underfull \hbox (badness 1502) in paragraph at lines 5004--5009 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5004--5009 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 5166--5175 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1795] [1796] Underfull \hbox (badness 3118) in paragraph at lines 5283--5285 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5316--5320 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1797] Underfull \hbox (badness 1348) in paragraph at lines 5434--5439 []\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages which these pack- Underfull \hbox (badness 3884) in paragraph at lines 5434--5439 \T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively) . Not Underfull \hbox (badness 1466) in paragraph at lines 5434--5439 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1798] Underfull \hbox (badness 10000) in paragraph at lines 5460--5464 []\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/ ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 , Underfull \hbox (badness 1629) in paragraph at lines 5460--5464 \T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win. binary"\T1/ptm/m/n/10 : the bi-nary types can be [1799] Underfull \hbox (badness 10000) in paragraph at lines 5518--5521 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5518--5521 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1800] Underfull \hbox (badness 10000) in paragraph at lines 5649--5654 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] Underfull \hbox (badness 10000) in paragraph at lines 6810--6812 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 6815--6820 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1819] [1820] Underfull \hbox (badness 10000) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p tm/m/n/10 re-turned by Underfull \hbox (badness 10000) in paragraph at lines 6972--6975 [][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1 0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els [1821] [1822] [1823] [1824] [1825] [1826] Underfull \hbox (badness 1789) in paragraph at lines 7353--7355 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] Underfull \hbox (badness 1097) in paragraph at lines 8174--8177 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1838] [1839] Underfull \hbox (badness 3000) in paragraph at lines 8305--8310 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] Underfull \hbox (badness 2134) in paragraph at lines 8879--8884 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] Underfull \hbox (badness 10000) in paragraph at lines 9820--9822 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs / [1862] [1863] [1864] Underfull \hbox (badness 10000) in paragraph at lines 9998--10002 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10029--10035 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1865] Underfull \hbox (badness 2096) in paragraph at lines 10147--10150 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10151--10154 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1866] Underfull \hbox (badness 1009) in paragraph at lines 10217--10228 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1867] [1868] [1869] [1870] [1871] Underfull \hbox (badness 3780) in paragraph at lines 10509--10513 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 10524--10527 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1872] [1873] [1874] [1875] [1876] Underfull \hbox (badness 5970) in paragraph at lines 10893--10896 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 3449) in paragraph at lines 10904--10913 []\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/ 10 ar-gu-ment's spec-i-fi-ca-tion should be fol- Underfull \hbox (badness 2512) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut" , "wrap")\T1/ptm/m/n/10 . De- Underfull \hbox (badness 1824) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po -nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 options[][][]\T1/ptm/m/n/10 ) Underfull \hbox (badness 3769) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses [1877] [1878] [1879] Underfull \hbox (badness 10000) in paragraph at lines 11072--11074 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 10000) in paragraph at lines 11469--11472 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11469--11472 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 10000) in paragraph at lines 11993--11995 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 11996--11998 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [1893] Underfull \hbox (badness 10000) in paragraph at lines 12026--12031 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 12026--12031 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 12055--12058 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [1894] [1895] [1896] [1897] [1898] Underfull \hbox (badness 1454) in paragraph at lines 12358--12362 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [1899] Underfull \hbox (badness 10000) in paragraph at lines 12428--12430 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [1900] [1901] [1902]) [1903] [1904] (./KernSmooth-pkg.tex Chapter 15. [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914]) (./MASS-pkg.tex Chapter 16. [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 7256) in paragraph at lines 1601--1603 []\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo r [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] Underfull \hbox (badness 7944) in paragraph at lines 2691--2694 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [1952] [1953] [1954] Underfull \hbox (badness 2384) in paragraph at lines 2861--2866 []\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m /sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \ T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "f"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2861--2866 \T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/ 10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 , Underfull \hbox (badness 1052) in paragraph at lines 2861--2866 \T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1 /ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1 /ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are [1955] [1956] Underfull \hbox (badness 4686) in paragraph at lines 3029--3031 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 3043--3047 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [1957] [1958] [1959] Underfull \hbox (badness 10000) in paragraph at lines 3231--3233 []\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/ 10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with [1960] [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 10000) in paragraph at lines 4808--4811 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [1982] Underfull \hbox (badness 10000) in paragraph at lines 4886--4889 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 1975) in paragraph at lines 5339--5341 []\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in the case of [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997] [1998] [1999]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has be en already used, duplicate ignored \relax l.6129 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6129 ...sical N, P, K Factorial Experiment}{npk} [2000] Underfull \hbox (badness 1931) in paragraph at lines 6247--6251 []\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space . That is [2001] [2002] [2003] [2004] Underfull \vbox (badness 10000) has occurred while \output is active [2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] Underfull \hbox (badness 10000) in paragraph at lines 7096--7103 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2013] Underfull \hbox (badness 3138) in paragraph at lines 7167--7173 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2014] [2015] [2016] Underfull \hbox (badness 6775) in paragraph at lines 7346--7349 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2017] [2018] [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 4686) in paragraph at lines 7979--7981 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 7995--7999 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] Underfull \hbox (badness 1259) in paragraph at lines 9379--9381 []\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e x-pected fre-quen-cies in the re-sult. Us-ing [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061]) (./Matrix-pkg.tex [2062] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 42--45 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 42--45 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2063] Underfull \hbox (badness 1769) in paragraph at lines 96--99 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2064] [2065] [2066] [2067] Underfull \hbox (badness 5119) in paragraph at lines 506--510 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2068] [2069] Underfull \hbox (badness 2418) in paragraph at lines 593--596 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2070] [2071] Underfull \hbox (badness 10000) in paragraph at lines 735--738 []\T1/ptm/m/n/10 In some ver-sions of \T1/phv/m/n/10 R\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 eigen[][][](CAex) \T1/ptm/m/n/10 fell into an in-fi-nite loop (wher eas [2072] [2073] Underfull \hbox (badness 1635) in paragraph at lines 948--950 []\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/ n/10 (or equiv-a-lently, [2074] [2075]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1060 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1060 ...- 'Matrix' S4 Generic and Methods}{chol} [2076pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,dsCMatrix.Rdash.method}) ha s been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2077] [2078] Underfull \hbox (badness 2277) in paragraph at lines 1314--1317 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use Underfull \hbox (badness 5741) in paragraph at lines 1361--1365 []\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion [][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra [2079] [2080] Underfull \hbox (badness 3189) in paragraph at lines 1457--1464 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("Cholesky", ...) \T1/ptm/m/n/10 or Underfull \hbox (badness 1097) in paragraph at lines 1486--1489 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1492--1496 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1549 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1549 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1550 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1571 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1582 \aliasA{rowSums}{colSums}{rowSums} [2082] [2083] [2084] Underfull \hbox (badness 3547) in paragraph at lines 1757--1760 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2085] [2086] [2087] [2088] [2089] Underfull \hbox (badness 2142) in paragraph at lines 2177--2181 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dgCMatrix", ...)\T1/ptm/m/n/10 , more Underfull \hbox (badness 3039) in paragraph at lines 2177--2181 \T1/ptm/m/n/10 typ-i-cally via \T1/zi4/m/sl/10 as(*, "CsparseMatrix") \T1/ptm/m /n/10 or sim-i-lar. Of-ten how-ever, more eas-ily via [2090] [2091] [2092] [2093] Underfull \hbox (badness 10000) in paragraph at lines 2486--2490 []\T1/ptm/m/n/10 Note that both \T1/zi4/m/sl/10 new(.) \T1/ptm/m/n/10 and [][]\ T1/zi4/m/sl/10 spMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (and other [2094] Underfull \hbox (badness 6842) in paragraph at lines 2572--2575 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2095] [2096] Underfull \hbox (badness 10000) in paragraph at lines 2850--2852 []\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 3099--3101 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr efer-able to (and more ef-fi-cient than) [2099] [2100] [2101] Underfull \hbox (badness 2717) in paragraph at lines 3376--3380 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsCMatrix", ...) \T1/ptm/m/n/10 or [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 2318) in paragraph at lines 3803--3807 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 4225--4230 []\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite Tay-lor se-ries [2113] [2114] [2115] Overfull \hbox (4.38089pt too wide) in paragraph at lines 4359--4359 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (49.38089pt too wide) in paragraph at lines 4362--4362 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2116] [2117] Underfull \hbox (badness 1931) in paragraph at lines 4587--4589 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2118] [2119] [2120] [2121] [2122] Underfull \hbox (badness 5862) in paragraph at lines 4892--4895 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2123] Underfull \hbox (badness 3229) in paragraph at lines 5024--5033 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2124] Underfull \hbox (badness 2698) in paragraph at lines 5065--5067 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2125] [2126] Underfull \hbox (badness 2846) in paragraph at lines 5175--5177 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con- tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault, [2127] [2128] [2129] Underfull \hbox (badness 2253) in paragraph at lines 5452--5455 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2130] [2131] [2132] [2133] Underfull \hbox (badness 5548) in paragraph at lines 5749--5752 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2134] Underfull \hbox (badness 2478) in paragraph at lines 5861--5866 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2135] Underfull \hbox (badness 10000) in paragraph at lines 5869--5872 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2136] Underfull \hbox (badness 4120) in paragraph at lines 6042--6045 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2137] Underfull \hbox (badness 10000) in paragraph at lines 6140--6143 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2138] Underfull \hbox (badness 10000) in paragraph at lines 6215--6218 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2139] Underfull \hbox (badness 2050) in paragraph at lines 6286--6289 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2140] [2141] [2142] Underfull \hbox (badness 6268) in paragraph at lines 6480--6483 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), Underfull \hbox (badness 6268) in paragraph at lines 6504--6508 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2143]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6596 \aliasA{det}{Matrix-class}{det} [2144] Underfull \hbox (badness 1205) in paragraph at lines 6687--6690 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6692--6695 [2145]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.6761 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.6851 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.6933 ...tcrossprod}{matrix-products}{tcrossprod} [2146pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7051 \end{Arguments} pdfTeX warning (ext4): destination with the same identifi er (name{Rfn.tcrossprod.Rdash.methods}) has been already used, duplicate ignore d \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7051 \end{Arguments} ] Underfull \hbox (badness 2698) in paragraph at lines 7071--7076 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2147] Underfull \hbox (badness 1430) in paragraph at lines 7168--7173 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2148] Underfull \hbox (badness 5548) in paragraph at lines 7237--7240 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2149] Underfull \hbox (badness 2368) in paragraph at lines 7289--7291 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1 /ptm/m/n/10 should be done, af-ter [2150] [2151] Underfull \vbox (badness 10000) has occurred while \output is active [2152] Underfull \hbox (badness 2478) in paragraph at lines 7492--7497 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7500--7503 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2153] [2154] [2155]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) has been already used, duplicate ignored \relax l.7724 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.7724 \HeaderA{norm}{Matrix Norms}{norm} [2156] [2157] Underfull \hbox (badness 4120) in paragraph at lines 7971--7974 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2158] Underfull \hbox (badness 10000) in paragraph at lines 8061--8064 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2159] Underfull \hbox (badness 10000) in paragraph at lines 8137--8140 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2160] Underfull \hbox (badness 4193) in paragraph at lines 8263--8265 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth er sig-na-tures (use [2161] Underfull \hbox (badness 1237) in paragraph at lines 8271--8278 []\T1/zi4/m/sl/10 signature(from = "pMatrix", to = "matrix")\T1/ptm/m/n/10 : co -er-cion to a tra-di-tional [2162] [2163] [2164]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8488 \aliasA{qr}{qr-methods}{qr} Underfull \hbox (badness 5119) in paragraph at lines 8530--8533 []\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma- trix with [2165] Underfull \hbox (badness 10000) in paragraph at lines 8599--8605 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [2166] [2167]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.rcond}) has been already used, duplicate ignored \relax l.8723 ... the Reciprocal Condition Number}{rcond} [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9292 \aliasA{solve}{solve-methods}{solve} [2176] Underfull \hbox (badness 10000) in paragraph at lines 9429--9441 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a Underfull \hbox (badness 10000) in paragraph at lines 9455--9462 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 10000) in paragraph at lines 9468--9478 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list [2177] Underfull \hbox (badness 1122) in paragraph at lines 9502--9504 []\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T 1/ptm/m/n/10 , Underfull \hbox (badness 1210) in paragraph at lines 9516--9519 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and [2178] Underfull \hbox (badness 10000) in paragraph at lines 9586--9589 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame Underfull \hbox (badness 10000) in paragraph at lines 9622--9625 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 9633--9637 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2179] [2180] [2181] [2182] [2183] [2184] Underfull \vbox (badness 10000) has occurred while \output is active [2185] [2186] [2187]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.qr.Q}) has been already used, duplicate ignored \relax l.10284 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2188] [2189]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.toeplitz}) has been already use d, duplicate ignored \relax l.10559 ...toeplitz}{sparseVector-class}{toeplitz} [2190] Underfull \hbox (badness 10000) in paragraph at lines 10644--10647 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2191] [2192] Underfull \hbox (badness 2653) in paragraph at lines 10774--10780 [][][]\T1/zi4/m/sl/10 Matrix[][][](*, sparse=TRUE) \T1/ptm/m/n/10 for the more usual con-struc-tor of such ma-tri-ces; sim-i-larly, [2193] [2194] Underfull \hbox (badness 2057) in paragraph at lines 10930--10932 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2195] [2196] [2197] Underfull \hbox (badness 1831) in paragraph at lines 11085--11091 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2198] [2199] [2200] [2201] [2202] Underfull \hbox (badness 6910) in paragraph at lines 11533--11535 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2203]) (./boot-pkg.tex [2204] Chapter 18. [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] Underfull \hbox (badness 1097) in paragraph at lines 788--796 []\T1/ptm/m/n/10 For most of the \T1/zi4/m/sl/10 boot \T1/ptm/m/n/10 meth-ods t he re-sam-pling is done in the mas-ter pro-cess, but not if Underfull \hbox (badness 4954) in paragraph at lines 797--807 \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d e-fault clus-ter, a sec-ond ap-proach is used if [2215] Underfull \hbox (badness 1881) in paragraph at lines 824--826 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2216] Underfull \vbox (badness 10000) has occurred while \output is active [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues [2219] Underfull \hbox (badness 2150) in paragraph at lines 1103--1109 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2220] [2221] [2222] [2223] Underfull \hbox (badness 1571) in paragraph at lines 1443--1445 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2224] [2225] [2226] [2227] [2228] [2229] Underfull \hbox (badness 1005) in paragraph at lines 1797--1804 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2230] [2231] Underfull \vbox (badness 10000) has occurred while \output is active [2232] [2233] Underfull \hbox (badness 7379) in paragraph at lines 2081--2083 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2234] [2235] [2236] Underfull \hbox (badness 1565) in paragraph at lines 2335--2340 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2237] Underfull \hbox (badness 1881) in paragraph at lines 2429--2431 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2238] [2239] Underfull \hbox (badness 2970) in paragraph at lines 2533--2537 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2533--2537 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] Underfull \hbox (badness 10000) in paragraph at lines 4187--4189 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2264] [2265] [2266] Underfull \hbox (badness 2393) in paragraph at lines 4386--4389 []\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by [2267] [2268] [2269] [2270] [2271] [2272] [2273] [2274] Underfull \hbox (badness 3000) in paragraph at lines 4956--4959 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2275] [2276] [2277] [2278] Underfull \hbox (badness 2293) in paragraph at lines 5235--5238 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5235--5238 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] Underfull \hbox (badness 4954) in paragraph at lines 6016--6019 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297] [2298] Underfull \hbox (badness 1596) in paragraph at lines 6737--6741 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308]) (./class-pkg.tex Chapter 19. [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] Underfull \hbox (badness 10000) in paragraph at lines 608--610 []\T1/ptm/m/n/10 the size of the code-book. De-faults to [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324]) (./cluster-pkg.tex Chapter 20. [2325] [2326] [2327] [2328] [2329] Underfull \vbox (badness 7685) has occurred while \output is active [2330] [2331] [2332] [2333] [2334] Underfull \hbox (badness 4144) in paragraph at lines 680--683 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2335] [2336] [2337] Underfull \hbox (badness 10000) in paragraph at lines 847--849 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2338] Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is [2339] [2340] [2341] Underfull \hbox (badness 6110) in paragraph at lines 1112--1116 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2342] [2343] [2344] [2345] [2346] Underfull \hbox (badness 2503) in paragraph at lines 1490--1493 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2347] [2348] [2349] [2350] [2351] [2352] [2353] [2354] Underfull \hbox (badness 10000) in paragraph at lines 2057--2059 []\T1/ptm/m/n/10 logical in-di-cat-ing if the con-verged. This is de-fined as Underfull \hbox (badness 10000) in paragraph at lines 2081--2087 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2355] [2356] [2357] [2358] Underfull \hbox (badness 6675) in paragraph at lines 2316--2318 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2359] [2360] [2361] [2362] [2363] [2364] Underfull \hbox (badness 1616) in paragraph at lines 2734--2739 []\T1/ptm/m/n/10 The de-fault \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 (or in-te-ge r \T1/zi4/m/sl/10 0\T1/ptm/m/n/10 ) cor-re-sponds to the orig-i-nal ``swap'' al -go-rithm, whereas Underfull \hbox (badness 2980) in paragraph at lines 2772--2776 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2365] [2366] [2367] [2368] [2369] Underfull \hbox (badness 1142) in paragraph at lines 3110--3113 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2370] [2371] Underfull \hbox (badness 1142) in paragraph at lines 3229--3232 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2372] [2373] [2374] [2375] Underfull \hbox (badness 2582) in paragraph at lines 3452--3457 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2376] Underfull \hbox (badness 10000) in paragraph at lines 3538--3543 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 , Underfull \hbox (badness 4378) in paragraph at lines 3538--3543 \T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T 1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider [2377] [2378] [2379] [2380] Underfull \hbox (badness 10000) in paragraph at lines 3828--3830 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2381] [2382] [2383] [2384] Underfull \hbox (badness 4108) in paragraph at lines 4052--4057 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col [2385] Underfull \hbox (badness 1062) in paragraph at lines 4107--4109 []\T1/ptm/m/n/10 numeric (rank 1) ar-ray of clus-ter-wise \T1/ptm/m/it/10 means \T1/ptm/m/n/10 of sil-hou-ette widths where Underfull \hbox (badness 1383) in paragraph at lines 4129--4134 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2386] [2387] [2388] [2389] [2390] [2391] [2392] [2393] [2394]) (./codetools-pkg.tex Chapter 21. [2395] [2396] [2397] [2398] [2399]) (./foreign-pkg.tex [2400] Chapter 22. Underfull \hbox (badness 1331) in paragraph at lines 33--37 \T1/ptm/m/n/10 (XPORT) For-mat'' avail-able as [][]$\T1/zi4/m/sl/10 http : / / ftp . sas . com / techsup / download / technote / ts140 . [2401] [2402] [2403] [2404] [2405] [2406] [2407] [2408] [2409] [2410] [2411] Underfull \hbox (badness 10000) in paragraph at lines 730--731 [2412] Underfull \hbox (badness 1642) in paragraph at lines 785--789 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Set in SAS [2413] [2414] [2415] [2416] [2417] [2418] Underfull \hbox (badness 10000) in paragraph at lines 1183--1189 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2419] [2420]) (./lattice-pkg.tex Chapter 23. [2421] [2422] [2423] [2424] [2425] [2426] Underfull \hbox (badness 10000) in paragraph at lines 480--485 []\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales \T1/ptm/m/n/10 in this case may be Underfull \hbox (badness 1237) in paragraph at lines 480--485 \T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh ich would usu-ally [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] [2435] [2436] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2437] [2438] [2439] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2440] [2441] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2442] [2443] [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2447] [2448] [2449] [2450] Underfull \hbox (badness 7064) in paragraph at lines 2364--2368 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2451] [2452] Underfull \hbox (badness 7064) in paragraph at lines 2549--2556 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2453] [2454] [2455] Underfull \hbox (badness 3291) in paragraph at lines 2763--2768 []\T1/ptm/m/n/10 for the \T1/zi4/m/sl/10 formula \T1/ptm/m/n/10 method, a for-m ula of the form \T1/zi4/m/sl/10 z ~ x * y [2456] Underfull \hbox (badness 2781) in paragraph at lines 2850--2852 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2457] Underfull \hbox (badness 2486) in paragraph at lines 2961--2965 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2458] [2459] [2460] Underfull \hbox (badness 10000) in paragraph at lines 3112--3120 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f or-mula of the form \T1/zi4/m/sl/10 z ~ x [2461] [2462] [2463] [2464]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3433 \aliasA{parallel}{B\_08\_splom}{parallel} [2465] [2466] [2467] [2468] [2469] [2470] [2471] Underfull \hbox (badness 5696) in paragraph at lines 3924--3928 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 3271) in paragraph at lines 3924--3928 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3924--3928 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2472] [2473] Underfull \hbox (badness 1173) in paragraph at lines 4063--4067 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4090--4092 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2474] [2475] [2476] Underfull \hbox (badness 3492) in paragraph at lines 4286--4296 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4311--4314 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4314--4316 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2477] [2478] [2479] [2480] [2481] [2482] [2483] [2484] [2485] [2486] Underfull \hbox (badness 6157) in paragraph at lines 5037--5040 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2487] [2488] [2489] [2490] [2491] [2492] Underfull \hbox (badness 10000) in paragraph at lines 5488--5491 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5488--5491 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2493] [2494] [2495] [2496] [2497] Underfull \hbox (badness 4805) in paragraph at lines 5848--5852 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5859--5866 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5859--5866 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5859--5866 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5859--5866 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5859--5866 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2498] [2499] [2500] [2501] Underfull \hbox (badness 4242) in paragraph at lines 6159--6164 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6159--6164 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2502] [2503] Underfull \hbox (badness 2310) in paragraph at lines 6275--6280 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2504] [2505] [2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] [2516] [2517] [2518] Underfull \hbox (badness 2012) in paragraph at lines 7327--7330 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2519] [2520] Underfull \hbox (badness 3333) in paragraph at lines 7499--7501 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2521] [2522] [2523] [2524] [2525] [2526] Underfull \hbox (badness 1436) in paragraph at lines 7909--7915 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for Underfull \hbox (badness 1661) in paragraph at lines 7909--7915 \T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e nce.line'' pa-ram-e-ter set- Underfull \hbox (badness 1231) in paragraph at lines 7909--7915 \T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti ngs. The [2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] Underfull \hbox (badness 10000) in paragraph at lines 8467--8470 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8513--8515 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2535] [2536] [2537] Underfull \hbox (badness 3895) in paragraph at lines 8674--8677 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2538] Underfull \hbox (badness 1515) in paragraph at lines 8750--8754 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2539] Underfull \hbox (badness 6316) in paragraph at lines 8856--8861 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2540] Underfull \hbox (badness 5908) in paragraph at lines 8873--8876 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2541] [2542] [2543] [2544] Overfull \hbox (29.94879pt too wide) in paragraph at lines 9161--9165 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left, right, left.name, right.name, condition Overfull \hbox (20.63074pt too wide) in paragraph at lines 9161--9165 \T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left, right.x, right.y, left.nam e, right.x.name, right.y.name, condition [2545] [2546] [2547] [2548] [2549] [2550] [2551] [2552] [2553] [2554]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9850 \aliasA{melanoma}{H\_melanoma}{melanoma} [2555] [2556] [2557] [2558]) (./mgcv-pkg.tex Chapter 24. Underfull \hbox (badness 1052) in paragraph at lines 40--42 []\T1/ptm/m/n/10 selects ex-act test statis-tic to use for sin-gle smooth term p-values. See [2559] [2560] [2561] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 193--198 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2562] Underfull \hbox (badness 2626) in paragraph at lines 248--251 []\T1/ptm/m/n/10 If all smooths are P-splines and all ten-sor prod-ucts are of the form [2563] [2564] [2565] [2566] [2567] Underfull \hbox (badness 1158) in paragraph at lines 563--565 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2568] [2569] Underfull \vbox (badness 10000) has occurred while \output is active [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] [2583] [2584] [2585] [2586] [2587] Underfull \hbox (badness 1142) in paragraph at lines 1783--1787 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2588] Underfull \hbox (badness 1043) in paragraph at lines 1806--1811 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2589] [2590] [2591] [2592] [2593] Underfull \vbox (badness 10000) has occurred while \output is active [2594] Underfull \vbox (badness 10000) has occurred while \output is active [2595] [2596] [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] Underfull \hbox (badness 10000) in paragraph at lines 3038--3042 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2608] [2609] Underfull \vbox (badness 10000) has occurred while \output is active [2610] [2611] [2612] [2613] [2614] [2615] [2616] [2617] [2618] [2619] [2620] Underfull \hbox (badness 1142) in paragraph at lines 3855--3859 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2621] [2622] Underfull \hbox (badness 1231) in paragraph at lines 3951--3953 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2623] [2624] Underfull \vbox (badness 10000) has occurred while \output is active [2625] [2626] [2627] Underfull \hbox (badness 2181) in paragraph at lines 4287--4288 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638] [2639] Underfull \vbox (badness 10000) has occurred while \output is active [2640] [2641] [2642] [2643] [2644] [2645] [2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657] [2658] Underfull \hbox (badness 6001) in paragraph at lines 6230--6232 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2659] [2660] [2661] [2662] [2663] [2664] [2665] [2666] [2667] Underfull \vbox (badness 10000) has occurred while \output is active [2668] [2669] Underfull \hbox (badness 1038) in paragraph at lines 6923--6926 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6923--6926 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2670] Underfull \hbox (badness 10000) in paragraph at lines 6979--6982 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] Overfull \hbox (21.78088pt too wide) in paragraph at lines 7554--7554 [] \T1/zi4/m/sl/10 block.size=50000,newdata.guaranteed=FALSE,na.action= na.pass,cluster=NULL,...)[] [2680] Underfull \hbox (badness 1852) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2681] [2682] Underfull \hbox (badness 1852) in paragraph at lines 7775--7778 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2683] [2684] Underfull \vbox (badness 10000) has occurred while \output is active [2685] [2686] Underfull \hbox (badness 1205) in paragraph at lines 7983--7985 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 7983--7985 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 7989--7994 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2687] Underfull \hbox (badness 1205) in paragraph at lines 8073--8075 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 8073--8075 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2688] [2689] Underfull \vbox (badness 10000) has occurred while \output is active [2690] Underfull \hbox (badness 1253) in paragraph at lines 8272--8274 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2691] [2692] [2693] [2694] Underfull \hbox (badness 4792) in paragraph at lines 8458--8461 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 8458--8461 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2695] Underfull \hbox (badness 10000) in paragraph at lines 8537--8540 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2696] [2697] [2698] [2699] [2700] [2701] [2702] [2703] Underfull \hbox (badness 1975) in paragraph at lines 9055--9060 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2704] [2705] Underfull \hbox (badness 1762) in paragraph at lines 9144--9156 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2706] [2707] [2708] Underfull \hbox (badness 7667) in paragraph at lines 9354--9360 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2709] Underfull \hbox (badness 10000) in paragraph at lines 9395--9396 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2710] Underfull \vbox (badness 10000) has occurred while \output is active [2711] Underfull \hbox (badness 10000) in paragraph at lines 9524--9526 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2712] [2713] Underfull \hbox (badness 10000) in paragraph at lines 9652--9653 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2714] [2715] [2716] Underfull \hbox (badness 1436) in paragraph at lines 9790--9795 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2717] [2718] [2719] [2720] [2721] [2722] [2723] Underfull \hbox (badness 10000) in paragraph at lines 10237--10243 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a [2724] [2725] [2726] Underfull \vbox (badness 10000) has occurred while \output is active [2727] Underfull \vbox (badness 10000) has occurred while \output is active [2728] Overfull \hbox (7.9809pt too wide) in paragraph at lines 10535--10535 []\T1/zi4/m/n/9 b <- gam(z~s(x,y,k=c(30,15),bs="so",xt=list(bnd=bnd,nmax=nmax) ),knots=knots,method="REML")[] [2729] Underfull \hbox (badness 10000) in paragraph at lines 10581--10582 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2730] [2731] [2732] [2733] Underfull \hbox (badness 3895) in paragraph at lines 10841--10846 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2734] Underfull \hbox (badness 10000) in paragraph at lines 10886--10888 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2735] [2736] [2737] Underfull \hbox (badness 1371) in paragraph at lines 11067--11073 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see [2738] Underfull \hbox (badness 10000) in paragraph at lines 11107--11111 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11107--11111 \T1/ptm/m/n/10 code[][]soap[][][], code[][]Spherical.Spline[][][], [][]\T1/zi4/ m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.defined. smooth[][][]\T1/ptm/m/n/10 , [2739] Underfull \hbox (badness 2326) in paragraph at lines 11174--11181 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2740] Underfull \hbox (badness 2158) in paragraph at lines 11259--11259 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] Underfull \vbox (badness 10000) has occurred while \output is active [2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759] [2760] [2761] [2762] Underfull \hbox (badness 1796) in paragraph at lines 12612--12615 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [2763] [2764] [2765] [2766] [2767]) (./nlme-pkg.tex [2768] Chapter 25. [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] [2777] [2778] [2779] [2780] [2781] [2782] [2783] [2784] [2785] [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] Underfull \hbox (badness 2875) in paragraph at lines 1997--2003 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1997--2003 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [2799] [2800] [2801] [2802] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [2803] [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 1067) in paragraph at lines 4412--4417 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] Underfull \hbox (badness 10000) in paragraph at lines 5158--5162 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [2848] [2849] [2850] [2851] [2852] [2853] [2854] Underfull \hbox (badness 10000) in paragraph at lines 5590--5593 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [2855] [2856] [2857] [2858] [2859] [2860] [2861] Underfull \hbox (badness 10000) in paragraph at lines 5971--5976 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [2862] [2863] [2864] [2865] Underfull \hbox (badness 1490) in paragraph at lines 6241--6252 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [2866] Underfull \hbox (badness 10000) in paragraph at lines 6305--6307 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2867] [2868] [2869] [2870] [2871] [2872] Underfull \hbox (badness 10000) in paragraph at lines 6716--6718 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2873] [2874] [2875] [2876] Underfull \hbox (badness 10000) in paragraph at lines 6986--6993 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [2877] [2878] [2879] [2880] Underfull \hbox (badness 10000) in paragraph at lines 7248--7253 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [2881] [2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] Underfull \hbox (badness 1642) in paragraph at lines 8030--8052 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [2893] [2894] Underfull \hbox (badness 1642) in paragraph at lines 8202--8224 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [2895] [2896] [2897] [2898] [2899] Underfull \hbox (badness 10000) in paragraph at lines 8509--8511 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2900] [2901] [2902] [2903] Underfull \hbox (badness 10000) in paragraph at lines 8772--8779 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] Underfull \hbox (badness 10000) in paragraph at lines 9297--9304 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [2913] [2914] [2915] [2916] [2917]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9659 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9659 ...rA{Matrix}{Assign Matrix Values}{Matrix} [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] [2929] Underfull \hbox (badness 1596) in paragraph at lines 10435--10461 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [2930] [2931] Underfull \hbox (badness 1490) in paragraph at lines 10573--10579 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [2932] [2933] [2934] [2935] Underfull \hbox (badness 10000) in paragraph at lines 10808--10810 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2936] [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] Underfull \hbox (badness 1286) in paragraph at lines 13663--13670 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] Underfull \hbox (badness 1215) in paragraph at lines 14191--14193 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [2986] [2987] [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15072 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15072 ...Extract Random Effects}{random.effects} [2999] [3000] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] [3009] Underfull \hbox (badness 1067) in paragraph at lines 15783--15788 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3010] [3011] [3012] [3013] Underfull \hbox (badness 1448) in paragraph at lines 16026--16035 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3014] [3015] Underfull \hbox (badness 10000) in paragraph at lines 16154--16172 []\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form Underfull \hbox (badness 1406) in paragraph at lines 16154--16172 \T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+ ...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] Underfull \hbox (badness 1728) in paragraph at lines 16731--16734 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3025] [3026] [3027] [3028] Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 []\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T 1/zi4/m/sl/10 pdMat Underfull \hbox (badness 6725) in paragraph at lines 17064--17073 \T1/ptm/m/n/10 class. 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Underfull \hbox (badness 4595) in paragraph at lines 40--43 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [3] [4] Underfull \hbox (badness 1960) in paragraph at lines 137--145 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 148--155 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 291--295 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] Underfull \hbox (badness 3977) in paragraph at lines 375--378 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 505--511 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1094--1097 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] Underfull \hbox (badness 4072) in paragraph at lines 1302--1308 []\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m /n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I t is guar-an-teed that [22] [23] [24] [25] [26] [27] [28] Overfull \hbox (26.88089pt too wide) in paragraph at lines 1808--1808 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 1993--1995 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3446--3448 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 2970) in paragraph at lines 4030--4036 []\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for [62] [63] [64] [65] [66] [67] [68] [69] Underfull \hbox (badness 2521) in paragraph at lines 4589--4591 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] Underfull \hbox (badness 2096) in paragraph at lines 5798--5811 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [87] [88] [89] [90] Underfull \hbox (badness 10000) in paragraph at lines 6120--6123 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [91] [92] Underfull \hbox (badness 2635) in paragraph at lines 6284--6290 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move Underfull \hbox (badness 2173) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er-ated by Underfull \hbox (badness 4441) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o m-mended) when writ-ing it Underfull \hbox (badness 1895) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or [93] Underfull \hbox (badness 3568) in paragraph at lines 6345--6352 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [94] [95] Underfull \vbox (badness 10000) has occurred while \output is active [96] [97] [98] [99] [100] [101] [102] Underfull \hbox (badness 4595) in paragraph at lines 6950--6953 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [103] Underfull \hbox (badness 2351) in paragraph at lines 7008--7011 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [104] [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 7258--7269 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [108] Underfull \hbox (badness 4479) in paragraph at lines 7330--7339 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7330--7339 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] Underfull \hbox (badness 1394) in paragraph at lines 8894--8899 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [130] [131] [132] [133] [134] Underfull \hbox (badness 1052) in paragraph at lines 9231--9236 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9231--9236 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 9369--9373 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198 5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi ki / IEEE _ [137] [138] [139] [140] [141] [142] Underfull \hbox (badness 2150) in paragraph at lines 9760--9763 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 9774--9782 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 9815--9822 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 4569) in paragraph at lines 10854--10858 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 10854--10858 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [158] [159] [160] [161] [162] [163] [164] Underfull \hbox (badness 2698) in paragraph at lines 11398--11407 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11398--11407 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 2253) in paragraph at lines 12350--12352 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [178] [179] Underfull \hbox (badness 1565) in paragraph at lines 12411--12415 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and Underfull \hbox (badness 10000) in paragraph at lines 12454--12456 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [180] [181] Underfull \hbox (badness 1466) in paragraph at lines 12592--12595 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [182] [183] Underfull \hbox (badness 10000) in paragraph at lines 12700--12704 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12711--12714 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / [184] [185] [186] Underfull \hbox (badness 3965) in paragraph at lines 12958--12962 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] Underfull \hbox (badness 4429) in paragraph at lines 13675--13678 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [198] Underfull \hbox (badness 10000) in paragraph at lines 13761--13763 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 13767--13771 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [199] Underfull \hbox (badness 2790) in paragraph at lines 13806--13809 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1 0 meth-ods: use [200] [201] [202] [203] [204] [205] [206] [207] Underfull \hbox (badness 2452) in paragraph at lines 14377--14381 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 14377--14381 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [208] [209] Underfull \hbox (badness 1092) in paragraph at lines 14528--14533 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [210] [211] [212] [213] Underfull \hbox (badness 6741) in paragraph at lines 14776--14780 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [214] [215] [216] [217] Underfull \hbox (badness 1867) in paragraph at lines 15082--15089 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [218] [219] [220] [221] Underfull \vbox (badness 10000) has occurred while \output is active [222] [223] Underfull \hbox (badness 3679) in paragraph at lines 15449--15451 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [224] [225] [226] [227] [228] [229] Underfull \hbox (badness 1478) in paragraph at lines 15929--15932 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [230] [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 16174--16176 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [233] [234] [235] [236] [237] [238] [239] [240] Underfull \hbox (badness 1442) in paragraph at lines 16708--16710 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [241] Underfull \hbox (badness 2452) in paragraph at lines 16800--16816 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [242] [243] [244] [245] [246] [247] Underfull \hbox (badness 1248) in paragraph at lines 17207--17210 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4 /m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 , [248] [249] [250] [251] Underfull \hbox (badness 4739) in paragraph at lines 17460--17462 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 18364--18368 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 18364--18368 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [266] Underfull \hbox (badness 1509) in paragraph at lines 18499--18506 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1354) in paragraph at lines 18499--18506 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and [267] Underfull \hbox (badness 1014) in paragraph at lines 18515--18520 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \hbox (badness 1264) in paragraph at lines 19229--19234 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [278] [279] [280] [281] [282] [283] [284] [285] [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 19977--19979 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] Underfull \hbox (badness 1655) in paragraph at lines 20965--20971 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion, [304] [305] Underfull \hbox (badness 1484) in paragraph at lines 21126--21134 []\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less the OS's de-fault has been [306] [307] [308] [309] Underfull \hbox (badness 2790) in paragraph at lines 21397--21400 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 21397--21400 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [310] [311] [312] [313] Underfull \hbox (badness 1194) in paragraph at lines 21676--21679 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [314] [315] [316] Underfull \hbox (badness 10000) in paragraph at lines 21877--21880 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 21877--21880 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] Underfull \hbox (badness 1199) in paragraph at lines 22925--22931 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 22925--22931 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [332] [333] [334] [335] [336] [337] [338] [339] Underfull \hbox (badness 1038) in paragraph at lines 23464--23473 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 23474--23477 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 23493--23495 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [340] Underfull \hbox (badness 10000) in paragraph at lines 23559--23569 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 23570--23576 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 23583--23588 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 23593--23595 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [341] [342] Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\ T1/ptm/m/n/10 ' or the Eu-ro-pean mir- Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 \T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d e"\T1/ptm/m/n/10 '. Can be set by [343] Underfull \hbox (badness 10000) in paragraph at lines 23845--23848 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 23869--23871 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 7203) in paragraph at lines 23897--23900 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 2735) in paragraph at lines 23907--23914 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der the CRAN OS X build), Underfull \hbox (badness 10000) in paragraph at lines 23907--23914 \T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 23916--23923 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 23916--23923 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 23916--23923 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 23916--23923 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [344] [345] [346] [347] [348] Underfull \hbox (badness 10000) in paragraph at lines 24227--24231 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 24227--24231 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [349] [350] [351] [352] Underfull \hbox (badness 1735) in paragraph at lines 24545--24549 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [353] [354] [355] [356] [357] [358] [359] [360] Underfull \hbox (badness 2726) in paragraph at lines 25040--25043 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] Underfull \hbox (badness 1052) in paragraph at lines 25855--25860 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] Underfull \hbox (badness 1533) in paragraph at lines 26583--26586 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [383] [384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28234--28238 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 28234--28238 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 28257--28259 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 1655) in paragraph at lines 28802--28804 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] Underfull \hbox (badness 10000) in paragraph at lines 29470--29473 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [425] [426] [427] Underfull \hbox (badness 2302) in paragraph at lines 29681--29688 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [428] [429] Underfull \hbox (badness 2261) in paragraph at lines 29834--29839 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [430] Underfull \hbox (badness 10000) in paragraph at lines 29861--29867 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 10000) in paragraph at lines 29937--29942 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \vbox (badness 10000) has occurred while \output is active [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] Underfull \hbox (badness 1072) in paragraph at lines 32707--32711 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 32712--32716 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 32740--32746 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 32740--32746 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 32740--32746 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [471] Underfull \hbox (badness 3343) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [472] [473] [474] [475] Underfull \hbox (badness 10000) in paragraph at lines 33049--33055 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1152) in paragraph at lines 33049--33055 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] Underfull \hbox (badness 3333) in paragraph at lines 34770--34775 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 1472) in paragraph at lines 35377--35380 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] Underfull \hbox (badness 2671) in paragraph at lines 36039--36042 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [521] [522] [523] [524] [525] Underfull \hbox (badness 10000) in paragraph at lines 36443--36446 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [526] [527] Underfull \hbox (badness 10000) in paragraph at lines 36564--36568 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [528] Underfull \hbox (badness 10000) in paragraph at lines 36626--36630 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] Underfull \hbox (badness 1990) in paragraph at lines 37841--37849 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 37841--37849 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [546] [547] [548] [549] [550] Underfull \hbox (badness 1515) in paragraph at lines 38113--38118 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [551] [552] [553] Underfull \hbox (badness 1917) in paragraph at lines 38343--38350 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [554] [555] [556] [557] [558] [559] [560] [561] Underfull \hbox (badness 3668) in paragraph at lines 38915--38917 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [562] Underfull \hbox (badness 2401) in paragraph at lines 39020--39024 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [563] [564] [565] Underfull \hbox (badness 2111) in paragraph at lines 39189--39194 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 6542) in paragraph at lines 39205--39210 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [566] [567] [568] [569] [570] [571] [572] Underfull \hbox (badness 10000) in paragraph at lines 39639--39644 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 39639--39644 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [573] Underfull \hbox (badness 5417) in paragraph at lines 39729--39733 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [574] Underfull \hbox (badness 10000) in paragraph at lines 39790--39794 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [575]) (./compiler-pkg.tex [576] Chapter 2. [577] [578] [579]) (./datasets-pkg.tex [580] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] Overfull \vbox (13.87083pt too high) has occurred while \output is active [624] Underfull \vbox (badness 1721) has occurred while \output is active [625] [626] Overfull \vbox (12.25539pt too high) has occurred while \output is active [627] [628] Overfull \vbox (17.12102pt too high) has occurred while \output is active [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] [639] Overfull \vbox (10.49593pt too high) has occurred while \output is active [640] Overfull \vbox (15.49593pt too high) has occurred while \output is active [641] Underfull \hbox (badness 1325) in paragraph at lines 3926--3929 []\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net / [642] [643] [644] [645] [646] [647] [648] [649] [650] Underfull \vbox (badness 10000) has occurred while \output is active [651] [652] [653] [654]) (./grDevices-pkg.tex Chapter 4. [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] Underfull \hbox (badness 5175) in paragraph at lines 1058--1060 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [671] [672] [673] Underfull \hbox (badness 1852) in paragraph at lines 1255--1258 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [674] [675] [676] Underfull \hbox (badness 1490) in paragraph at lines 1461--1466 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [677] Underfull \hbox (badness 2698) in paragraph at lines 1515--1518 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [678] Underfull \hbox (badness 10000) in paragraph at lines 1584--1588 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [679] [680] [681] [682] Underfull \hbox (badness 1325) in paragraph at lines 1867--1877 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [683] [684] Underfull \hbox (badness 10000) in paragraph at lines 1972--1974 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [685] [686] Underfull \hbox (badness 6758) in paragraph at lines 2133--2136 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [687] [688] [689] [690] [691] [692] [693] [694] Underfull \hbox (badness 10000) in paragraph at lines 2650--2651 Underfull \vbox (badness 10000) has occurred while \output is active [695] [696] [697] [698] [699] [700] Underfull \hbox (badness 1152) in paragraph at lines 3088--3090 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [701] [702] [703] [704] [705] Underfull \hbox (badness 2856) in paragraph at lines 3409--3412 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3423--3425 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [706] [707] Underfull \hbox (badness 1173) in paragraph at lines 3539--3549 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] Underfull \hbox (badness 1067) in paragraph at lines 4239--4246 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [718] [719] Underfull \hbox (badness 5231) in paragraph at lines 4400--4402 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 http : / / partners . adobe . com / public / [720] Underfull \hbox (badness 1789) in paragraph at lines 4477--4479 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [721] Underfull \hbox (badness 1377) in paragraph at lines 4527--4532 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues Underfull \hbox (badness 2671) in paragraph at lines 4554--4562 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as [722] Underfull \hbox (badness 1418) in paragraph at lines 4603--4610 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4611--4620 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4611--4620 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4621--4623 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [723] [724] Underfull \hbox (badness 1057) in paragraph at lines 4732--4737 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4792--4794 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [725] [726] Underfull \hbox (badness 2035) in paragraph at lines 4916--4925 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4916--4925 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4916--4925 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [727] [728] Underfull \hbox (badness 6775) in paragraph at lines 4984--4992 \T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Underfull \hbox (badness 3000) in paragraph at lines 4984--4992 \T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . com / pub / examples / nutshell / cjkv / Underfull \hbox (badness 7344) in paragraph at lines 5003--5005 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [729] [730] Underfull \hbox (badness 1546) in paragraph at lines 5123--5131 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [731] Underfull \hbox (badness 1648) in paragraph at lines 5200--5204 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [732] [733] [734] [735] [736] [737] Underfull \hbox (badness 10000) in paragraph at lines 5623--5626 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [738] [739] [740] [741] [742] [743] Underfull \hbox (badness 1189) in paragraph at lines 6019--6021 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [744] [745] Underfull \hbox (badness 10000) in paragraph at lines 6117--6119 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [746] [747] [748] [749] Underfull \hbox (badness 3780) in paragraph at lines 6408--6414 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [750] [751] Underfull \hbox (badness 2680) in paragraph at lines 6604--6606 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [752] [753] [754]) (./graphics-pkg.tex Chapter 5. [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [765] [766] [767] [768] Underfull \vbox (badness 10000) has occurred while \output is active [769] [770] [771] [772] [773] Underfull \hbox (badness 4634) in paragraph at lines 1246--1249 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] Underfull \hbox (badness 1009) in paragraph at lines 2277--2284 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \vbox (badness 10000) has occurred while \output is active [811] [812] [813] [814] Underfull \hbox (badness 1867) in paragraph at lines 3903--3907 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 1924) in paragraph at lines 4354--4359 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4383--4386 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [822] [823] [824] [825] [826] Underfull \hbox (badness 10000) in paragraph at lines 4727--4733 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4727--4733 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [827] [828] Underfull \hbox (badness 10000) in paragraph at lines 4857--4860 [829 ] Underfull \hbox (badness 10000) in paragraph at lines 4918--4920 [830 ] [831] Underfull \hbox (badness 10000) in paragraph at lines 5111--5113 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [832] Underfull \vbox (badness 10000) has occurred while \output is active [833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6515--6516 [][] [853 ] [854] Underfull \vbox (badness 10000) has occurred while \output is active [855] [856] [857] [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 1048) in paragraph at lines 7224--7229 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [864] [865] Underfull \hbox (badness 1038) in paragraph at lines 7340--7343 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] Underfull \hbox (badness 6691) in paragraph at lines 8558--8561 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8561--8563 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [885]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8643 \HeaderA{units}{Graphical Units}{units} [886] [887] [888] [889]) (./grid-pkg.tex [890] Chapter 6. [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [897] [898] [899] [900] [901] [902] [903] [904] [905] Underfull \hbox (badness 4279) in paragraph at lines 972--981 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] Underfull \hbox (badness 1067) in paragraph at lines 4342--4345 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [959] [960] [961] [962] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] Underfull \hbox (badness 10000) in paragraph at lines 5856--5862 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [982] [983] [984] [985] [986] [987] [988] [989] Underfull \hbox (badness 7649) in paragraph at lines 6326--6329 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [990] [991] [992] [993]) (./methods-pkg.tex [994] Chapter 7. [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] Underfull \hbox (badness 2237) in paragraph at lines 1432--1434 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 10000) in paragraph at lines 2028--2033 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2028--2033 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] Underfull \hbox (badness 10000) in paragraph at lines 2628--2631 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1029] [1030] Underfull \hbox (badness 1132) in paragraph at lines 2768--2772 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2800--2805 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1031] [1032] [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1102) in paragraph at lines 3308--3310 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1038] [1039] [1040] [1041] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Underfull \hbox (badness 1436) in paragraph at lines 4550--4553 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4579--4585 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4579--4585 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1055] [1056] [1057] [1058] [1059] [1060] [1061] Underfull \vbox (badness 10000) has occurred while \output is active [1062] [1063] Underfull \hbox (badness 1092) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5299--5302 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1064] [1065] [1066] [1067] [1068] Underfull \hbox (badness 1087) in paragraph at lines 5619--5624 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1069] [1070] [1071] Underfull \hbox (badness 2221) in paragraph at lines 5845--5850 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] Underfull \vbox (badness 10000) has occurred while \output is active [1080] [1081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6707 \aliasA{S4}{S3Part}{S4} [1082] [1083] [1084] [1085]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.6983 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.6985 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.6986 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.6988 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.6989 \aliasA{Summary}{S4groupGeneric}{Summary} Underfull \hbox (badness 2050) in paragraph at lines 7050--7054 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1086] [1087] [1088] Underfull \hbox (badness 1286) in paragraph at lines 7235--7237 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] Underfull \hbox (badness 2894) in paragraph at lines 9563--9567 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 / Underfull \hbox (badness 1852) in paragraph at lines 9642--9646 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1120] [1121] [1122] [1123]) (./parallel-pkg.tex [1124] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 3386) in paragraph at lines 1246--1249 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1143] [1144] [1145]) (./splines-pkg.tex [1146] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159]) (./stats-pkg.tex [1160] Chapter 10. [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 1412) in paragraph at lines 843--845 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 2503) in paragraph at lines 1324--1327 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1181] [1182] Underfull \hbox (badness 10000) in paragraph at lines 1503--1507 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 3965) in paragraph at lines 2163--2165 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1193] [1194] [1195] [1196] [1197] Underfull \hbox (badness 3965) in paragraph at lines 2495--2497 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] Underfull \hbox (badness 2503) in paragraph at lines 3308--3311 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 3989) in paragraph at lines 4528--4535 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] Underfull \hbox (badness 2932) in paragraph at lines 5144--5146 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1237] [1238] [1239] [1240] Underfull \hbox (badness 1142) in paragraph at lines 5385--5397 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1241] [1242] Underfull \hbox (badness 2503) in paragraph at lines 5524--5528 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1243] Underfull \hbox (badness 1168) in paragraph at lines 5585--5590 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1244] [1245] [1246] [1247] [1248] [1249] [1250] Underfull \hbox (badness 8132) in paragraph at lines 6027--6032 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1251] [1252] [1253] [1254] Underfull \hbox (badness 7081) in paragraph at lines 6297--6300 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6301--6303 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1255] [1256] [1257] [1258] [1259] Underfull \vbox (badness 10000) has occurred while \output is active [1260] [1261] [1262] [1263] [1264] [1265] [1266] Underfull \hbox (badness 10000) in paragraph at lines 7109--7112 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1267] [1268] Underfull \hbox (badness 10000) in paragraph at lines 7246--7249 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tp : / / cran . r-[]project . org / web / views / [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] Underfull \hbox (badness 2626) in paragraph at lines 8721--8724 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1291] [1292] Underfull \hbox (badness 2503) in paragraph at lines 8821--8825 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1293] [1294] [1295] [1296] [1297] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9155--9157 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] Underfull \hbox (badness 1019) in paragraph at lines 9821--9824 []\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/ 10 http : / / dlmf . [1308] [1309] [1310] Underfull \hbox (badness 4518) in paragraph at lines 10081--10086 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1311] [1312] [1313] [1314] [1315] Underfull \hbox (badness 2142) in paragraph at lines 10423--10426 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10442--10445 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1316] Underfull \hbox (badness 1708) in paragraph at lines 10504--10507 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1694) in paragraph at lines 10883--10886 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1322] Underfull \hbox (badness 1867) in paragraph at lines 10902--10911 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1323] [1324] [1325] [1326] [1327] [1328] [1329]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i gnored \relax l.11349 \aliasA{hat}{influence.measures}{hat} [1330] Underfull \hbox (badness 1484) in paragraph at lines 11471--11473 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] Underfull \hbox (badness 4441) in paragraph at lines 12024--12026 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12031--12033 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1340] [1341] [1342] [1343] [1344] Underfull \hbox (badness 2894) in paragraph at lines 12365--12369 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 4518) in paragraph at lines 13059--13064 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] Underfull \hbox (badness 4518) in paragraph at lines 13706--13711 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] Underfull \hbox (badness 2503) in paragraph at lines 14906--14910 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1384] [1385] [1386] [1387] [1388] [1389] [1390] Underfull \hbox (badness 1418) in paragraph at lines 15415--15421 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] Underfull \hbox (badness 2359) in paragraph at lines 17041--17043 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1416] Underfull \vbox (badness 10000) has occurred while \output is active [1417] Underfull \vbox (badness 10000) has occurred while \output is active [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] Underfull \hbox (badness 1377) in paragraph at lines 17952--17957 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 17957--17960 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 17970--17974 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to [1430] Underfull \hbox (badness 2662) in paragraph at lines 17978--17982 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1431] [1432] Underfull \vbox (badness 10000) has occurred while \output is active [1433] [1434] [1435] [1436] [1437] [1438] [1439] Underfull \hbox (badness 1337) in paragraph at lines 18594--18597 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 5563) in paragraph at lines 19320--19322 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19323--19326 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1452] [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 2503) in paragraph at lines 19689--19692 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 19716--19718 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 10000) in paragraph at lines 20692--20698 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1337) in paragraph at lines 22007--22013 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] Underfull \hbox (badness 10000) in paragraph at lines 22800--22803 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] Underfull \hbox (badness 10000) in paragraph at lines 23375--23378 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1514] Underfull \hbox (badness 3690) in paragraph at lines 23426--23430 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1515] [1516] [1517] [1518] Underfull \hbox (badness 7667) in paragraph at lines 23692--23694 []\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je ct which is co-ercible to one by [1519] [1520] [1521] Underfull \hbox (badness 3439) in paragraph at lines 23895--23901 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 10000) in paragraph at lines 24443--24448 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] Underfull \hbox (badness 3514) in paragraph at lines 25459--25464 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1545] Underfull \hbox (badness 3514) in paragraph at lines 25521--25526 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1546] Underfull \hbox (badness 3514) in paragraph at lines 25578--25583 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1547] Underfull \hbox (badness 3514) in paragraph at lines 25639--25645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1548] [1549] [1550] [1551] Underfull \hbox (badness 3514) in paragraph at lines 25852--25857 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1552] Underfull \hbox (badness 3514) in paragraph at lines 25908--25913 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 25965--25970 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1553] Underfull \hbox (badness 3514) in paragraph at lines 26020--26025 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1554] Underfull \hbox (badness 6691) in paragraph at lines 26089--26094 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] Underfull \hbox (badness 10000) in paragraph at lines 26611--26614 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26611--26614 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] Underfull \hbox (badness 5431) in paragraph at lines 27217--27219 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1572] [1573] [1574] [1575] Underfull \hbox (badness 5431) in paragraph at lines 27427--27430 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1576] [1577] [1578] [1579] Underfull \hbox (badness 1337) in paragraph at lines 27739--27743 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1580] [1581] Underfull \hbox (badness 10000) in paragraph at lines 27856--27859 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1582] [1583] [1584] Underfull \hbox (badness 1616) in paragraph at lines 28039--28042 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] Underfull \hbox (badness 10000) in paragraph at lines 29161--29165 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1603] [1604] Underfull \vbox (badness 10000) has occurred while \output is active [1605] [1606] [1607] Underfull \hbox (badness 1337) in paragraph at lines 29524--29528 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 30008--30012 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] Underfull \hbox (badness 5161) in paragraph at lines 30101--30103 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 10000) in paragraph at lines 30465--30470 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1622] [1623] [1624]) (./stats4-pkg.tex Chapter 11. [1625] [1626] [1627] [1628] [1629] [1630]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1631] [1632] [1633]) (./tcltk-pkg.tex [1634] Chapter 12. [1635] [1636] [1637] [1638] [1639] [1640] [1641] Underfull \vbox (badness 10000) has occurred while \output is active [1642] Underfull \hbox (badness 1546) in paragraph at lines 649--656 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 3375) in paragraph at lines 1390--1393 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1654]) (./tools-pkg.tex Chapter 13. [1655] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1656] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1657] [1658] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1659] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1660] [1661] [1662] [1663] [1664] [1665] [1666] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1667] [1668] [1669] [1670] Underfull \hbox (badness 1635) in paragraph at lines 1048--1050 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1671] Underfull \hbox (badness 4441) in paragraph at lines 1117--1125 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- Underfull \hbox (badness 1014) in paragraph at lines 1137--1139 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies [1672] Underfull \hbox (badness 10000) in paragraph at lines 1166--1169 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1166--1169 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1673] [1674] Underfull \hbox (badness 10000) in paragraph at lines 1294--1296 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1675] [1676] Underfull \hbox (badness 7981) in paragraph at lines 1464--1468 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1470--1472 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1677] [1678] [1679] [1680]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1666 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1681] Underfull \hbox (badness 5726) in paragraph at lines 1792--1797 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1792--1797 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 7981) in paragraph at lines 2183--2189 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1689] [1690] [1691] [1692] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2442. [1693] [1694] [1695] Underfull \hbox (badness 1424) in paragraph at lines 2679--2681 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 10000) in paragraph at lines 3369--3371 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 1838) in paragraph at lines 3706--3712 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3706--3712 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1711] Underfull \hbox (badness 5726) in paragraph at lines 3786--3791 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3786--3791 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1712] [1713] Underfull \hbox (badness 1688) in paragraph at lines 3928--3940 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1714] [1715] [1716] [1717]) (./utils-pkg.tex [1718] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1719] [1720] [1721] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1722] [1723] [1724] [1725] [1726] Underfull \hbox (badness 10000) in paragraph at lines 536--542 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 536--542 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1727] [1728] Underfull \hbox (badness 5847) in paragraph at lines 647--653 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 647--653 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as Underfull \hbox (badness 3861) in paragraph at lines 715--720 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] Underfull \hbox (badness 1371) in paragraph at lines 1298--1300 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 2057) in paragraph at lines 1747--1749 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1744] [1745] Underfull \hbox (badness 10000) in paragraph at lines 1841--1843 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1746] Underfull \hbox (badness 5189) in paragraph at lines 1931--1933 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1747] Underfull \vbox (badness 10000) has occurred while \output is active [1748] [1749] Underfull \hbox (badness 1661) in paragraph at lines 2146--2153 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- [1750] Underfull \hbox (badness 1990) in paragraph at lines 2163--2166 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] Underfull \hbox (badness 1430) in paragraph at lines 3155--3161 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 2837) in paragraph at lines 3155--3161 \T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t he plat-form and scheme, but set-ting Underfull \hbox (badness 1231) in paragraph at lines 3195--3201 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.3967 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.3967 ...mat Unordered and Ordered Lists}{format} [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] Underfull \hbox (badness 1371) in paragraph at lines 4915--4917 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1791] [1792] Underfull \hbox (badness 1502) in paragraph at lines 5004--5009 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5004--5009 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 5166--5175 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1795] [1796] Underfull \hbox (badness 3118) in paragraph at lines 5283--5285 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5316--5320 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1797] Underfull \hbox (badness 1348) in paragraph at lines 5434--5439 []\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages which these pack- Underfull \hbox (badness 3884) in paragraph at lines 5434--5439 \T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively) . Not Underfull \hbox (badness 1466) in paragraph at lines 5434--5439 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1798] Underfull \hbox (badness 10000) in paragraph at lines 5460--5464 []\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/ ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 , Underfull \hbox (badness 1629) in paragraph at lines 5460--5464 \T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win. binary"\T1/ptm/m/n/10 : the bi-nary types can be [1799] Underfull \hbox (badness 10000) in paragraph at lines 5518--5521 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5518--5521 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1800] Underfull \hbox (badness 10000) in paragraph at lines 5649--5654 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] Underfull \hbox (badness 10000) in paragraph at lines 6810--6812 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 6815--6820 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1819] [1820] Underfull \hbox (badness 10000) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p tm/m/n/10 re-turned by Underfull \hbox (badness 10000) in paragraph at lines 6972--6975 [][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1 0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els [1821] [1822] [1823] [1824] [1825] [1826] Underfull \hbox (badness 1789) in paragraph at lines 7353--7355 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] Underfull \hbox (badness 1097) in paragraph at lines 8174--8177 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1838] [1839] Underfull \hbox (badness 3000) in paragraph at lines 8305--8310 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] Underfull \hbox (badness 2134) in paragraph at lines 8879--8884 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] Underfull \hbox (badness 10000) in paragraph at lines 9820--9822 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs / [1862] [1863] [1864] Underfull \hbox (badness 10000) in paragraph at lines 9998--10002 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10029--10035 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1865] Underfull \hbox (badness 2096) in paragraph at lines 10147--10150 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10151--10154 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1866] Underfull \hbox (badness 1009) in paragraph at lines 10217--10228 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1867] [1868] [1869] [1870] [1871] Underfull \hbox (badness 3780) in paragraph at lines 10509--10513 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 10524--10527 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1872] [1873] [1874] [1875] [1876] Underfull \hbox (badness 5970) in paragraph at lines 10893--10896 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 3449) in paragraph at lines 10904--10913 []\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/ 10 ar-gu-ment's spec-i-fi-ca-tion should be fol- Underfull \hbox (badness 2512) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut" , "wrap")\T1/ptm/m/n/10 . De- Underfull \hbox (badness 1824) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po -nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 options[][][]\T1/ptm/m/n/10 ) Underfull \hbox (badness 3769) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses [1877] [1878] [1879] Underfull \hbox (badness 10000) in paragraph at lines 11072--11074 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 10000) in paragraph at lines 11469--11472 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11469--11472 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 10000) in paragraph at lines 11993--11995 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 11996--11998 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [1893] Underfull \hbox (badness 10000) in paragraph at lines 12026--12031 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 12026--12031 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 12055--12058 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [1894] [1895] [1896] [1897] [1898] Underfull \hbox (badness 1454) in paragraph at lines 12358--12362 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [1899] Underfull \hbox (badness 10000) in paragraph at lines 12428--12430 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [1900] [1901] [1902]) [1903] [1904] (./KernSmooth-pkg.tex Chapter 15. [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914]) (./MASS-pkg.tex Chapter 16. [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 7256) in paragraph at lines 1601--1603 []\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo r [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] Underfull \hbox (badness 7944) in paragraph at lines 2691--2694 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [1952] [1953] [1954] Underfull \hbox (badness 2384) in paragraph at lines 2861--2866 []\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m /sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \ T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "f"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2861--2866 \T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/ 10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 , Underfull \hbox (badness 1052) in paragraph at lines 2861--2866 \T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1 /ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1 /ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are [1955] [1956] Underfull \hbox (badness 4686) in paragraph at lines 3029--3031 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 3043--3047 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [1957] [1958] [1959] Underfull \hbox (badness 10000) in paragraph at lines 3231--3233 []\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/ 10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with [1960] [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 10000) in paragraph at lines 4808--4811 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [1982] Underfull \hbox (badness 10000) in paragraph at lines 4886--4889 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 1975) in paragraph at lines 5339--5341 []\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in the case of [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997] [1998] [1999]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has be en already used, duplicate ignored \relax l.6129 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6129 ...sical N, P, K Factorial Experiment}{npk} [2000] Underfull \hbox (badness 1931) in paragraph at lines 6247--6251 []\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space . That is [2001] [2002] [2003] [2004] Underfull \vbox (badness 10000) has occurred while \output is active [2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] Underfull \hbox (badness 10000) in paragraph at lines 7096--7103 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2013] Underfull \hbox (badness 3138) in paragraph at lines 7167--7173 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2014] [2015] [2016] Underfull \hbox (badness 6775) in paragraph at lines 7346--7349 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2017] [2018] [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 4686) in paragraph at lines 7979--7981 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 7995--7999 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] Underfull \hbox (badness 1259) in paragraph at lines 9379--9381 []\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e x-pected fre-quen-cies in the re-sult. Us-ing [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061]) (./Matrix-pkg.tex [2062] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 42--45 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 42--45 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2063] Underfull \hbox (badness 1769) in paragraph at lines 96--99 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2064] [2065] [2066] [2067] Underfull \hbox (badness 5119) in paragraph at lines 506--510 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2068] [2069] Underfull \hbox (badness 2418) in paragraph at lines 593--596 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2070] [2071] Underfull \hbox (badness 10000) in paragraph at lines 735--738 []\T1/ptm/m/n/10 In some ver-sions of \T1/phv/m/n/10 R\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 eigen[][][](CAex) \T1/ptm/m/n/10 fell into an in-fi-nite loop (wher eas [2072] [2073] Underfull \hbox (badness 1635) in paragraph at lines 948--950 []\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/ n/10 (or equiv-a-lently, [2074] [2075]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1060 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1060 ...- 'Matrix' S4 Generic and Methods}{chol} [2076pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,dsCMatrix.Rdash.method}) ha s been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2077] [2078] Underfull \hbox (badness 2277) in paragraph at lines 1314--1317 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use Underfull \hbox (badness 5741) in paragraph at lines 1361--1365 []\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion [][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra [2079] [2080] Underfull \hbox (badness 3189) in paragraph at lines 1457--1464 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("Cholesky", ...) \T1/ptm/m/n/10 or Underfull \hbox (badness 1097) in paragraph at lines 1486--1489 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1492--1496 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1549 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1549 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1550 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1571 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1582 \aliasA{rowSums}{colSums}{rowSums} [2082] [2083] [2084] Underfull \hbox (badness 3547) in paragraph at lines 1757--1760 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2085] [2086] [2087] [2088] [2089] Underfull \hbox (badness 2142) in paragraph at lines 2177--2181 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dgCMatrix", ...)\T1/ptm/m/n/10 , more Underfull \hbox (badness 3039) in paragraph at lines 2177--2181 \T1/ptm/m/n/10 typ-i-cally via \T1/zi4/m/sl/10 as(*, "CsparseMatrix") \T1/ptm/m /n/10 or sim-i-lar. Of-ten how-ever, more eas-ily via [2090] [2091] [2092] [2093] Underfull \hbox (badness 10000) in paragraph at lines 2486--2490 []\T1/ptm/m/n/10 Note that both \T1/zi4/m/sl/10 new(.) \T1/ptm/m/n/10 and [][]\ T1/zi4/m/sl/10 spMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (and other [2094] Underfull \hbox (badness 6842) in paragraph at lines 2572--2575 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2095] [2096] Underfull \hbox (badness 10000) in paragraph at lines 2850--2852 []\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 3099--3101 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr efer-able to (and more ef-fi-cient than) [2099] [2100] [2101] Underfull \hbox (badness 2717) in paragraph at lines 3376--3380 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsCMatrix", ...) \T1/ptm/m/n/10 or [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 2318) in paragraph at lines 3803--3807 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 4225--4230 []\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite Tay-lor se-ries [2113] [2114] [2115] Overfull \hbox (4.38089pt too wide) in paragraph at lines 4359--4359 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (49.38089pt too wide) in paragraph at lines 4362--4362 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2116] [2117] Underfull \hbox (badness 1931) in paragraph at lines 4587--4589 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2118] [2119] [2120] [2121] [2122] Underfull \hbox (badness 5862) in paragraph at lines 4892--4895 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2123] Underfull \hbox (badness 3229) in paragraph at lines 5024--5033 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2124] Underfull \hbox (badness 2698) in paragraph at lines 5065--5067 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2125] [2126] Underfull \hbox (badness 2846) in paragraph at lines 5175--5177 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con- tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault, [2127] [2128] [2129] Underfull \hbox (badness 2253) in paragraph at lines 5452--5455 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2130] [2131] [2132] [2133] Underfull \hbox (badness 5548) in paragraph at lines 5749--5752 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2134] Underfull \hbox (badness 2478) in paragraph at lines 5861--5866 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2135] Underfull \hbox (badness 10000) in paragraph at lines 5869--5872 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2136] Underfull \hbox (badness 4120) in paragraph at lines 6042--6045 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2137] Underfull \hbox (badness 10000) in paragraph at lines 6140--6143 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2138] Underfull \hbox (badness 10000) in paragraph at lines 6215--6218 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2139] Underfull \hbox (badness 2050) in paragraph at lines 6286--6289 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2140] [2141] [2142] Underfull \hbox (badness 6268) in paragraph at lines 6480--6483 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), Underfull \hbox (badness 6268) in paragraph at lines 6504--6508 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2143]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6596 \aliasA{det}{Matrix-class}{det} [2144] Underfull \hbox (badness 1205) in paragraph at lines 6687--6690 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6692--6695 [2145]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.6761 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.6851 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.6933 ...tcrossprod}{matrix-products}{tcrossprod} [2146pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7051 \end{Arguments} pdfTeX warning (ext4): destination with the same identifi er (name{Rfn.tcrossprod.Rdash.methods}) has been already used, duplicate ignore d \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7051 \end{Arguments} ] Underfull \hbox (badness 2698) in paragraph at lines 7071--7076 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2147] Underfull \hbox (badness 1430) in paragraph at lines 7168--7173 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2148] Underfull \hbox (badness 5548) in paragraph at lines 7237--7240 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2149] Underfull \hbox (badness 2368) in paragraph at lines 7289--7291 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1 /ptm/m/n/10 should be done, af-ter [2150] [2151] Underfull \vbox (badness 10000) has occurred while \output is active [2152] Underfull \hbox (badness 2478) in paragraph at lines 7492--7497 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7500--7503 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2153] [2154] [2155]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) has been already used, duplicate ignored \relax l.7724 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.7724 \HeaderA{norm}{Matrix Norms}{norm} [2156] [2157] Underfull \hbox (badness 4120) in paragraph at lines 7971--7974 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2158] Underfull \hbox (badness 10000) in paragraph at lines 8061--8064 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2159] Underfull \hbox (badness 10000) in paragraph at lines 8137--8140 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2160] Underfull \hbox (badness 4193) in paragraph at lines 8263--8265 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth er sig-na-tures (use [2161] Underfull \hbox (badness 1237) in paragraph at lines 8271--8278 []\T1/zi4/m/sl/10 signature(from = "pMatrix", to = "matrix")\T1/ptm/m/n/10 : co -er-cion to a tra-di-tional [2162] [2163] [2164]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8488 \aliasA{qr}{qr-methods}{qr} Underfull \hbox (badness 5119) in paragraph at lines 8530--8533 []\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma- trix with [2165] Underfull \hbox (badness 10000) in paragraph at lines 8599--8605 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [2166] [2167]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.rcond}) has been already used, duplicate ignored \relax l.8723 ... the Reciprocal Condition Number}{rcond} [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9292 \aliasA{solve}{solve-methods}{solve} [2176] Underfull \hbox (badness 10000) in paragraph at lines 9429--9441 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a Underfull \hbox (badness 10000) in paragraph at lines 9455--9462 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 10000) in paragraph at lines 9468--9478 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list [2177] Underfull \hbox (badness 1122) in paragraph at lines 9502--9504 []\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T 1/ptm/m/n/10 , Underfull \hbox (badness 1210) in paragraph at lines 9516--9519 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and [2178] Underfull \hbox (badness 10000) in paragraph at lines 9586--9589 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame Underfull \hbox (badness 10000) in paragraph at lines 9622--9625 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 9633--9637 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2179] [2180] [2181] [2182] [2183] [2184] Underfull \vbox (badness 10000) has occurred while \output is active [2185] [2186] [2187]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.qr.Q}) has been already used, duplicate ignored \relax l.10284 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2188] [2189]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.toeplitz}) has been already use d, duplicate ignored \relax l.10559 ...toeplitz}{sparseVector-class}{toeplitz} [2190] Underfull \hbox (badness 10000) in paragraph at lines 10644--10647 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2191] [2192] Underfull \hbox (badness 2653) in paragraph at lines 10774--10780 [][][]\T1/zi4/m/sl/10 Matrix[][][](*, sparse=TRUE) \T1/ptm/m/n/10 for the more usual con-struc-tor of such ma-tri-ces; sim-i-larly, [2193] [2194] Underfull \hbox (badness 2057) in paragraph at lines 10930--10932 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2195] [2196] [2197] Underfull \hbox (badness 1831) in paragraph at lines 11085--11091 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2198] [2199] [2200] [2201] [2202] Underfull \hbox (badness 6910) in paragraph at lines 11533--11535 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2203]) (./boot-pkg.tex [2204] Chapter 18. [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] Underfull \hbox (badness 1097) in paragraph at lines 788--796 []\T1/ptm/m/n/10 For most of the \T1/zi4/m/sl/10 boot \T1/ptm/m/n/10 meth-ods t he re-sam-pling is done in the mas-ter pro-cess, but not if Underfull \hbox (badness 4954) in paragraph at lines 797--807 \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d e-fault clus-ter, a sec-ond ap-proach is used if [2215] Underfull \hbox (badness 1881) in paragraph at lines 824--826 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2216] Underfull \vbox (badness 10000) has occurred while \output is active [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues [2219] Underfull \hbox (badness 2150) in paragraph at lines 1103--1109 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2220] [2221] [2222] [2223] Underfull \hbox (badness 1571) in paragraph at lines 1443--1445 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2224] [2225] [2226] [2227] [2228] [2229] Underfull \hbox (badness 1005) in paragraph at lines 1797--1804 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2230] [2231] Underfull \vbox (badness 10000) has occurred while \output is active [2232] [2233] Underfull \hbox (badness 7379) in paragraph at lines 2081--2083 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2234] [2235] [2236] Underfull \hbox (badness 1565) in paragraph at lines 2335--2340 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2237] Underfull \hbox (badness 1881) in paragraph at lines 2429--2431 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2238] [2239] Underfull \hbox (badness 2970) in paragraph at lines 2533--2537 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2533--2537 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] Underfull \hbox (badness 10000) in paragraph at lines 4187--4189 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2264] [2265] [2266] Underfull \hbox (badness 2393) in paragraph at lines 4386--4389 []\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by [2267] [2268] [2269] [2270] [2271] [2272] [2273] [2274] Underfull \hbox (badness 3000) in paragraph at lines 4956--4959 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2275] [2276] [2277] [2278] Underfull \hbox (badness 2293) in paragraph at lines 5235--5238 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5235--5238 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] Underfull \hbox (badness 4954) in paragraph at lines 6016--6019 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297] [2298] Underfull \hbox (badness 1596) in paragraph at lines 6737--6741 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308]) (./class-pkg.tex Chapter 19. [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] Underfull \hbox (badness 10000) in paragraph at lines 608--610 []\T1/ptm/m/n/10 the size of the code-book. De-faults to [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324]) (./cluster-pkg.tex Chapter 20. [2325] [2326] [2327] [2328] [2329] Underfull \vbox (badness 7685) has occurred while \output is active [2330] [2331] [2332] [2333] [2334] Underfull \hbox (badness 4144) in paragraph at lines 680--683 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2335] [2336] [2337] Underfull \hbox (badness 10000) in paragraph at lines 847--849 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2338] Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is [2339] [2340] [2341] Underfull \hbox (badness 6110) in paragraph at lines 1112--1116 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2342] [2343] [2344] [2345] [2346] Underfull \hbox (badness 2503) in paragraph at lines 1490--1493 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2347] [2348] [2349] [2350] [2351] [2352] [2353] [2354] Underfull \hbox (badness 10000) in paragraph at lines 2057--2059 []\T1/ptm/m/n/10 logical in-di-cat-ing if the con-verged. This is de-fined as Underfull \hbox (badness 10000) in paragraph at lines 2081--2087 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2355] [2356] [2357] [2358] Underfull \hbox (badness 6675) in paragraph at lines 2316--2318 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2359] [2360] [2361] [2362] [2363] [2364] Underfull \hbox (badness 1616) in paragraph at lines 2734--2739 []\T1/ptm/m/n/10 The de-fault \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 (or in-te-ge r \T1/zi4/m/sl/10 0\T1/ptm/m/n/10 ) cor-re-sponds to the orig-i-nal ``swap'' al -go-rithm, whereas Underfull \hbox (badness 2980) in paragraph at lines 2772--2776 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2365] [2366] [2367] [2368] [2369] Underfull \hbox (badness 1142) in paragraph at lines 3110--3113 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2370] [2371] Underfull \hbox (badness 1142) in paragraph at lines 3229--3232 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2372] [2373] [2374] [2375] Underfull \hbox (badness 2582) in paragraph at lines 3452--3457 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2376] Underfull \hbox (badness 10000) in paragraph at lines 3538--3543 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 , Underfull \hbox (badness 4378) in paragraph at lines 3538--3543 \T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T 1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider [2377] [2378] [2379] [2380] Underfull \hbox (badness 10000) in paragraph at lines 3828--3830 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2381] [2382] [2383] [2384] Underfull \hbox (badness 4108) in paragraph at lines 4052--4057 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col [2385] Underfull \hbox (badness 1062) in paragraph at lines 4107--4109 []\T1/ptm/m/n/10 numeric (rank 1) ar-ray of clus-ter-wise \T1/ptm/m/it/10 means \T1/ptm/m/n/10 of sil-hou-ette widths where Underfull \hbox (badness 1383) in paragraph at lines 4129--4134 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2386] [2387] [2388] [2389] [2390] [2391] [2392] [2393] [2394]) (./codetools-pkg.tex Chapter 21. [2395] [2396] [2397] [2398] [2399]) (./foreign-pkg.tex [2400] Chapter 22. Underfull \hbox (badness 1331) in paragraph at lines 33--37 \T1/ptm/m/n/10 (XPORT) For-mat'' avail-able as [][]$\T1/zi4/m/sl/10 http : / / ftp . sas . com / techsup / download / technote / ts140 . [2401] [2402] [2403] [2404] [2405] [2406] [2407] [2408] [2409] [2410] [2411] Underfull \hbox (badness 10000) in paragraph at lines 730--731 [2412] Underfull \hbox (badness 1642) in paragraph at lines 785--789 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Set in SAS [2413] [2414] [2415] [2416] [2417] [2418] Underfull \hbox (badness 10000) in paragraph at lines 1183--1189 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2419] [2420]) (./lattice-pkg.tex Chapter 23. [2421] [2422] [2423] [2424] [2425] [2426] Underfull \hbox (badness 10000) in paragraph at lines 480--485 []\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales \T1/ptm/m/n/10 in this case may be Underfull \hbox (badness 1237) in paragraph at lines 480--485 \T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh ich would usu-ally [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] [2435] [2436] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2437] [2438] [2439] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2440] [2441] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2442] [2443] [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2447] [2448] [2449] [2450] Underfull \hbox (badness 7064) in paragraph at lines 2364--2368 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2451] [2452] Underfull \hbox (badness 7064) in paragraph at lines 2549--2556 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2453] [2454] [2455] Underfull \hbox (badness 3291) in paragraph at lines 2763--2768 []\T1/ptm/m/n/10 for the \T1/zi4/m/sl/10 formula \T1/ptm/m/n/10 method, a for-m ula of the form \T1/zi4/m/sl/10 z ~ x * y [2456] Underfull \hbox (badness 2781) in paragraph at lines 2850--2852 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2457] Underfull \hbox (badness 2486) in paragraph at lines 2961--2965 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2458] [2459] [2460] Underfull \hbox (badness 10000) in paragraph at lines 3112--3120 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f or-mula of the form \T1/zi4/m/sl/10 z ~ x [2461] [2462] [2463] [2464]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3433 \aliasA{parallel}{B\_08\_splom}{parallel} [2465] [2466] [2467] [2468] [2469] [2470] [2471] Underfull \hbox (badness 5696) in paragraph at lines 3924--3928 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 3271) in paragraph at lines 3924--3928 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3924--3928 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2472] [2473] Underfull \hbox (badness 1173) in paragraph at lines 4063--4067 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4090--4092 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2474] [2475] [2476] Underfull \hbox (badness 3492) in paragraph at lines 4286--4296 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4311--4314 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4314--4316 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2477] [2478] [2479] [2480] [2481] [2482] [2483] [2484] [2485] [2486] Underfull \hbox (badness 6157) in paragraph at lines 5037--5040 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2487] [2488] [2489] [2490] [2491] [2492] Underfull \hbox (badness 10000) in paragraph at lines 5488--5491 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5488--5491 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2493] [2494] [2495] [2496] [2497] Underfull \hbox (badness 4805) in paragraph at lines 5848--5852 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5859--5866 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5859--5866 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5859--5866 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5859--5866 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5859--5866 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2498] [2499] [2500] [2501] Underfull \hbox (badness 4242) in paragraph at lines 6159--6164 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6159--6164 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2502] [2503] Underfull \hbox (badness 2310) in paragraph at lines 6275--6280 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2504] [2505] [2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] [2516] [2517] [2518] Underfull \hbox (badness 2012) in paragraph at lines 7327--7330 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2519] [2520] Underfull \hbox (badness 3333) in paragraph at lines 7499--7501 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2521] [2522] [2523] [2524] [2525] [2526] Underfull \hbox (badness 1436) in paragraph at lines 7909--7915 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for Underfull \hbox (badness 1661) in paragraph at lines 7909--7915 \T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e nce.line'' pa-ram-e-ter set- Underfull \hbox (badness 1231) in paragraph at lines 7909--7915 \T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti ngs. The [2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] Underfull \hbox (badness 10000) in paragraph at lines 8467--8470 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8513--8515 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2535] [2536] [2537] Underfull \hbox (badness 3895) in paragraph at lines 8674--8677 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2538] Underfull \hbox (badness 1515) in paragraph at lines 8750--8754 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2539] Underfull \hbox (badness 6316) in paragraph at lines 8856--8861 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2540] Underfull \hbox (badness 5908) in paragraph at lines 8873--8876 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2541] [2542] [2543] [2544] Overfull \hbox (29.94879pt too wide) in paragraph at lines 9161--9165 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left, right, left.name, right.name, condition Overfull \hbox (20.63074pt too wide) in paragraph at lines 9161--9165 \T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left, right.x, right.y, left.nam e, right.x.name, right.y.name, condition [2545] [2546] [2547] [2548] [2549] [2550] [2551] [2552] [2553] [2554]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9850 \aliasA{melanoma}{H\_melanoma}{melanoma} [2555] [2556] [2557] [2558]) (./mgcv-pkg.tex Chapter 24. Underfull \hbox (badness 1052) in paragraph at lines 40--42 []\T1/ptm/m/n/10 selects ex-act test statis-tic to use for sin-gle smooth term p-values. See [2559] [2560] [2561] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 193--198 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2562] Underfull \hbox (badness 2626) in paragraph at lines 248--251 []\T1/ptm/m/n/10 If all smooths are P-splines and all ten-sor prod-ucts are of the form [2563] [2564] [2565] [2566] [2567] Underfull \hbox (badness 1158) in paragraph at lines 563--565 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2568] [2569] Underfull \vbox (badness 10000) has occurred while \output is active [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] [2583] [2584] [2585] [2586] [2587] Underfull \hbox (badness 1142) in paragraph at lines 1783--1787 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2588] Underfull \hbox (badness 1043) in paragraph at lines 1806--1811 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2589] [2590] [2591] [2592] [2593] Underfull \vbox (badness 10000) has occurred while \output is active [2594] Underfull \vbox (badness 10000) has occurred while \output is active [2595] [2596] [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] Underfull \hbox (badness 10000) in paragraph at lines 3038--3042 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2608] [2609] Underfull \vbox (badness 10000) has occurred while \output is active [2610] [2611] [2612] [2613] [2614] [2615] [2616] [2617] [2618] [2619] [2620] Underfull \hbox (badness 1142) in paragraph at lines 3855--3859 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2621] [2622] Underfull \hbox (badness 1231) in paragraph at lines 3951--3953 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2623] [2624] Underfull \vbox (badness 10000) has occurred while \output is active [2625] [2626] [2627] Underfull \hbox (badness 2181) in paragraph at lines 4287--4288 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638] [2639] Underfull \vbox (badness 10000) has occurred while \output is active [2640] [2641] [2642] [2643] [2644] [2645] [2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657] [2658] Underfull \hbox (badness 6001) in paragraph at lines 6230--6232 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2659] [2660] [2661] [2662] [2663] [2664] [2665] [2666] [2667] Underfull \vbox (badness 10000) has occurred while \output is active [2668] [2669] Underfull \hbox (badness 1038) in paragraph at lines 6923--6926 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6923--6926 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2670] Underfull \hbox (badness 10000) in paragraph at lines 6979--6982 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] Overfull \hbox (21.78088pt too wide) in paragraph at lines 7554--7554 [] \T1/zi4/m/sl/10 block.size=50000,newdata.guaranteed=FALSE,na.action= na.pass,cluster=NULL,...)[] [2680] Underfull \hbox (badness 1852) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2681] [2682] Underfull \hbox (badness 1852) in paragraph at lines 7775--7778 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2683] [2684] Underfull \vbox (badness 10000) has occurred while \output is active [2685] [2686] Underfull \hbox (badness 1205) in paragraph at lines 7983--7985 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 7983--7985 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 7989--7994 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2687] Underfull \hbox (badness 1205) in paragraph at lines 8073--8075 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 8073--8075 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2688] [2689] Underfull \vbox (badness 10000) has occurred while \output is active [2690] Underfull \hbox (badness 1253) in paragraph at lines 8272--8274 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2691] [2692] [2693] [2694] Underfull \hbox (badness 4792) in paragraph at lines 8458--8461 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 8458--8461 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2695] Underfull \hbox (badness 10000) in paragraph at lines 8537--8540 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2696] [2697] [2698] [2699] [2700] [2701] [2702] [2703] Underfull \hbox (badness 1975) in paragraph at lines 9055--9060 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2704] [2705] Underfull \hbox (badness 1762) in paragraph at lines 9144--9156 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2706] [2707] [2708] Underfull \hbox (badness 7667) in paragraph at lines 9354--9360 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2709] Underfull \hbox (badness 10000) in paragraph at lines 9395--9396 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2710] Underfull \vbox (badness 10000) has occurred while \output is active [2711] Underfull \hbox (badness 10000) in paragraph at lines 9524--9526 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2712] [2713] Underfull \hbox (badness 10000) in paragraph at lines 9652--9653 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2714] [2715] [2716] Underfull \hbox (badness 1436) in paragraph at lines 9790--9795 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2717] [2718] [2719] [2720] [2721] [2722] [2723] Underfull \hbox (badness 10000) in paragraph at lines 10237--10243 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a [2724] [2725] [2726] Underfull \vbox (badness 10000) has occurred while \output is active [2727] Underfull \vbox (badness 10000) has occurred while \output is active [2728] Overfull \hbox (7.9809pt too wide) in paragraph at lines 10535--10535 []\T1/zi4/m/n/9 b <- gam(z~s(x,y,k=c(30,15),bs="so",xt=list(bnd=bnd,nmax=nmax) ),knots=knots,method="REML")[] [2729] Underfull \hbox (badness 10000) in paragraph at lines 10581--10582 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2730] [2731] [2732] [2733] Underfull \hbox (badness 3895) in paragraph at lines 10841--10846 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2734] Underfull \hbox (badness 10000) in paragraph at lines 10886--10888 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2735] [2736] [2737] Underfull \hbox (badness 1371) in paragraph at lines 11067--11073 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see [2738] Underfull \hbox (badness 10000) in paragraph at lines 11107--11111 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11107--11111 \T1/ptm/m/n/10 code[][]soap[][][], code[][]Spherical.Spline[][][], [][]\T1/zi4/ m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.defined. smooth[][][]\T1/ptm/m/n/10 , [2739] Underfull \hbox (badness 2326) in paragraph at lines 11174--11181 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2740] Underfull \hbox (badness 2158) in paragraph at lines 11259--11259 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] Underfull \vbox (badness 10000) has occurred while \output is active [2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759] [2760] [2761] [2762] Underfull \hbox (badness 1796) in paragraph at lines 12612--12615 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [2763] [2764] [2765] [2766] [2767]) (./nlme-pkg.tex [2768] Chapter 25. [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] [2777] [2778] [2779] [2780] [2781] [2782] [2783] [2784] [2785] [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] Underfull \hbox (badness 2875) in paragraph at lines 1997--2003 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1997--2003 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [2799] [2800] [2801] [2802] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [2803] [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 1067) in paragraph at lines 4412--4417 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] Underfull \hbox (badness 10000) in paragraph at lines 5158--5162 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [2848] [2849] [2850] [2851] [2852] [2853] [2854] Underfull \hbox (badness 10000) in paragraph at lines 5590--5593 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [2855] [2856] [2857] [2858] [2859] [2860] [2861] Underfull \hbox (badness 10000) in paragraph at lines 5971--5976 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [2862] [2863] [2864] [2865] Underfull \hbox (badness 1490) in paragraph at lines 6241--6252 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [2866] Underfull \hbox (badness 10000) in paragraph at lines 6305--6307 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2867] [2868] [2869] [2870] [2871] [2872] Underfull \hbox (badness 10000) in paragraph at lines 6716--6718 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2873] [2874] [2875] [2876] Underfull \hbox (badness 10000) in paragraph at lines 6986--6993 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [2877] [2878] [2879] [2880] Underfull \hbox (badness 10000) in paragraph at lines 7248--7253 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [2881] [2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] Underfull \hbox (badness 1642) in paragraph at lines 8030--8052 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [2893] [2894] Underfull \hbox (badness 1642) in paragraph at lines 8202--8224 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [2895] [2896] [2897] [2898] [2899] Underfull \hbox (badness 10000) in paragraph at lines 8509--8511 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2900] [2901] [2902] [2903] Underfull \hbox (badness 10000) in paragraph at lines 8772--8779 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] Underfull \hbox (badness 10000) in paragraph at lines 9297--9304 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [2913] [2914] [2915] [2916] [2917]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9659 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9659 ...rA{Matrix}{Assign Matrix Values}{Matrix} [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] [2929] Underfull \hbox (badness 1596) in paragraph at lines 10435--10461 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [2930] [2931] Underfull \hbox (badness 1490) in paragraph at lines 10573--10579 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [2932] [2933] [2934] [2935] Underfull \hbox (badness 10000) in paragraph at lines 10808--10810 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2936] [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] Underfull \hbox (badness 1286) in paragraph at lines 13663--13670 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] Underfull \hbox (badness 1215) in paragraph at lines 14191--14193 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [2986] [2987] [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15072 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15072 ...Extract Random Effects}{random.effects} [2999] [3000] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] [3009] Underfull \hbox (badness 1067) in paragraph at lines 15783--15788 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3010] [3011] [3012] [3013] Underfull \hbox (badness 1448) in paragraph at lines 16026--16035 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3014] [3015] Underfull \hbox (badness 10000) in paragraph at lines 16154--16172 []\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form Underfull \hbox (badness 1406) in paragraph at lines 16154--16172 \T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+ ...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] Underfull \hbox (badness 1728) in paragraph at lines 16731--16734 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3025] [3026] [3027] [3028] Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 []\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T 1/zi4/m/sl/10 pdMat Underfull \hbox (badness 6725) in paragraph at lines 17064--17073 \T1/ptm/m/n/10 class. De-fault de-pends on the method func-tion: \T1/zi4/m/sl/1 0 "Blocked" \T1/ptm/m/n/10 for Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \ T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D iagonal" Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Mult iple of an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/zi4/m/sl/10 "General Positive-Definite, Natural Parametrization" Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "G eneral Positive-Definite" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdSymm\T1/ptm/m/n/ 10 , and [3029] Underfull \hbox (badness 10000) in paragraph at lines 17128--17136 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for Underfull \hbox (badness 2486) in paragraph at lines 17128--17136 \T1/zi4/m/sl/10 "Different standard deviations per stratum" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varIdent\T1/ptm/m/n/10 , [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] Underfull \hbox (badness 10000) in paragraph at lines 17904--17914 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 17904--17914 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3042] [3043] [3044] [3045] [3046] Underfull \hbox (badness 5036) in paragraph at lines 18228--18237 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059]) (./nnet-pkg.tex [3060] Chapter 26. [3061] Underfull \hbox (badness 10000) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [3062] [3063] [3064] [3065] [3066] [3067] [3068]) (./rpart-pkg.tex Chapter 27. [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097]) (./spatial-pkg.tex [3098] Chapter 28. [3099] [3100] [3101] [3102] [3103] [3104] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3105] [3106] [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117]) (./survival-pkg.tex [3118] Chapter 29. [3119] [3120] [3121]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.267 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.267 ... Myelogenous Leukemia survival data}{aml} [3122] [3123] [3124] [3125] [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] [3129] [3130] [3131] [3132]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.957 ...herapy for Stage B/C colon cancer}{colon} [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] Underfull \hbox (badness 1389) in paragraph at lines 2172--2174 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] Underfull \hbox (badness 5274) in paragraph at lines 3401--3403 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3169] [3170] [3171] [3172] [3173] Underfull \hbox (badness 1540) in paragraph at lines 3749--3752 []\T1/ptm/m/n/10 an ar-ray con-tain-ing the ex-pected num-ber of events (or per -son years if [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] Underfull \hbox (badness 1281) in paragraph at lines 4299--4304 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] Underfull \hbox (badness 10000) in paragraph at lines 5170--5179 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3194] [3195] Underfull \hbox (badness 1038) in paragraph at lines 5322--5328 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3196] [3197] [3198] [3199] Underfull \hbox (badness 10000) in paragraph at lines 5591--5595 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3200] [3201] [3202] [3203] [3204] [3205] Underfull \hbox (badness 2150) in paragraph at lines 6063--6070 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] \T1/ptm/m/n/10 for sur-vival curves f rom Cox mod-els. [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3206] [3207] [3208] Underfull \hbox (badness 1354) in paragraph at lines 6287--6291 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221]) [3222] (./fullrefman.ind [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2159--2161 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3243] [3244] [3245] [3246] [3247] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2691--2693 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] Overfull \hbox (20.8567pt too wide) in paragraph at lines 3730--3732 []\T1/zi4/m/it/10 [,CsparseMatrix,index,index,logical-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 3732--3734 []\T1/zi4/m/it/10 [,CsparseMatrix,index,missing,logical-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 3734--3736 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lines 3888--3890 []\T1/zi4/m/it/10 [<-,CsparseMatrix,missing,index,sparseVector-method Overfull \hbox (85.8567pt too wide) in paragraph at lines 3890--3892 []\T1/zi4/m/it/10 [<-,CsparseMatrix,ndenseMatrix,missing,replValue-method Overfull \hbox (90.8567pt too wide) in paragraph at lines 3892--3894 []\T1/zi4/m/it/10 [<-,CsparseMatrix,nsparseMatrix,missing,replValue-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 3904--3906 []\T1/zi4/m/it/10 [<-,Matrix,ldenseMatrix,missing,replValue-method Overfull \hbox (55.8567pt too wide) in paragraph at lines 3906--3908 []\T1/zi4/m/it/10 [<-,Matrix,lsparseMatrix,missing,replValue-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 3908--3910 []\T1/zi4/m/it/10 [<-,Matrix,matrix,missing,replValue-method Overfull \hbox (50.8567pt too wide) in paragraph at lines 3914--3916 []\T1/zi4/m/it/10 [<-,Matrix,ndenseMatrix,missing,replValue-method Overfull \hbox (55.8567pt too wide) in paragraph at lines 3916--3918 []\T1/zi4/m/it/10 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lines 4452--4454 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3262] Overfull \hbox (20.8567pt too wide) in paragraph at lines 4608--4610 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4610--4612 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4614--4616 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4616--4618 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3263] Overfull \hbox (10.8567pt too wide) in paragraph at lines 4858--4860 []\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 4862--4864 []\T1/zi4/m/it/10 Arith,ddenseMatrix,ddenseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 4868--4870 []\T1/zi4/m/it/10 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[]\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 6176--6178 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 6206--6208 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 6208--6210 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method [3271] Overfull \hbox (5.8567pt too wide) in paragraph at lines 6214--6216 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3272] [3273] [3274] Overfull \hbox (10.8567pt too wide) in paragraph at lines 6876--6878 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 6878--6880 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 6888--6890 []\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method Overfull \hbox (5.8567pt 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lines 7014--7016 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method [3276] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7060--7062 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3277] Overfull \hbox (5.8567pt too wide) in paragraph at lines 7210--7212 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7212--7214 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7244--7246 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7258--7260 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7260--7262 []\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method [3278] Overfull \hbox (15.8567pt too wide) in paragraph at lines 7286--7288 []\T1/zi4/m/it/10 coerce,lsparseMatrix,dsparseMatrix-method [3279] 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coerce,ndenseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7502--7504 []\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7506--7508 []\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7508--7510 []\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7548--7550 []\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7572--7574 []\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7574--7576 []\T1/zi4/m/it/10 coerce,ngTMatrix,triangularMatrix-method [3281] Overfull \hbox (15.8567pt too wide) in paragraph at lines 7606--7608 []\T1/zi4/m/it/10 coerce,nsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7608--7610 []\T1/zi4/m/it/10 coerce,nsparseVector,dsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7610--7612 []\T1/zi4/m/it/10 coerce,nsparseVector,isparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7612--7614 []\T1/zi4/m/it/10 coerce,nsparseVector,lsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7614--7616 []\T1/zi4/m/it/10 coerce,nsparseVector,zsparseVector-method [3282] Overfull \hbox (15.8567pt too wide) in paragraph at lines 7732--7734 []\T1/zi4/m/it/10 coerce,RsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7734--7736 []\T1/zi4/m/it/10 coerce,RsparseMatrix,denseMatrix-method Underfull \vbox (badness 2564) has occurred while \output is active Overfull \hbox (15.8567pt too wide) in paragraph at lines 7740--7742 []\T1/zi4/m/it/10 coerce,RsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7742--7744 []\T1/zi4/m/it/10 coerce,RsparseMatrix,generalMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7746--7748 []\T1/zi4/m/it/10 coerce,RsparseMatrix,lsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7752--7754 []\T1/zi4/m/it/10 coerce,RsparseMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7754--7756 []\T1/zi4/m/it/10 coerce,RsparseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7760--7762 []\T1/zi4/m/it/10 coerce,sparseMatrix,generalMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7770--7772 []\T1/zi4/m/it/10 coerce,sparseMatrix,RsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7772--7774 []\T1/zi4/m/it/10 coerce,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 7774--7776 []\T1/zi4/m/it/10 coerce,sparseMatrix,symmetricMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 7776--7778 []\T1/zi4/m/it/10 coerce,sparseMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7778--7780 []\T1/zi4/m/it/10 coerce,sparseVector,CsparseMatrix-method [3283] Overfull \hbox (5.8567pt too wide) in paragraph at lines 7788--7790 []\T1/zi4/m/it/10 coerce,sparseVector,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7790--7792 []\T1/zi4/m/it/10 coerce,sparseVector,TsparseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 7796--7798 []\T1/zi4/m/it/10 coerce,triangularMatrix,symmetricMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7798--7800 []\T1/zi4/m/it/10 coerce,TsparseMatrix,CsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7804--7806 []\T1/zi4/m/it/10 coerce,TsparseMatrix,lsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7810--7812 []\T1/zi4/m/it/10 coerce,TsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7812--7814 []\T1/zi4/m/it/10 coerce,TsparseMatrix,sparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7814--7816 []\T1/zi4/m/it/10 coerce,xsparseVector,dsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7816--7818 []\T1/zi4/m/it/10 coerce,xsparseVector,isparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7818--7820 []\T1/zi4/m/it/10 coerce,xsparseVector,lsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7820--7822 []\T1/zi4/m/it/10 coerce,xsparseVector,nsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7822--7824 []\T1/zi4/m/it/10 coerce,xsparseVector,zsparseVector-method Underfull \vbox (badness 1484) has occurred while \output is active [3284] Overfull \hbox (20.8567pt too wide) in paragraph at lines 7951--7953 []\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 7969--7971 []\T1/zi4/m/it/10 Compare,lsparseMatrix,lsparseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 7985--7987 []\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method [3285] Underfull \vbox (badness 1484) has occurred while \output is active [3286] Overfull \hbox (30.8567pt too wide) in paragraph at lines 8478--8480 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 8480--8482 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,ddenseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 8482--8484 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8486--8488 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8488--8490 []\T1/zi4/m/it/10 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at lines 8660--8662 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Underfull \vbox (badness 1484) has occurred while \output is active Overfull \hbox (15.01662pt too wide) in paragraph at lines 8717--8719 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 8722--8724 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3289] Overfull \hbox (5.8567pt too wide) in paragraph at lines 9048--9050 []\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9050--9052 []\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method [3290] Overfull \hbox (15.8567pt too wide) in paragraph at lines 9058--9060 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 9072--9074 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paragraph at lines 12776--12778 []\T1/zi4/m/it/10 kronecker,diagonalMatrix,Matrix-method [3308] Overfull \hbox (30.8567pt too wide) in paragraph at lines 12778--12780 []\T1/zi4/m/it/10 kronecker,dsparseMatrix,dsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 12788--12790 []\T1/zi4/m/it/10 kronecker,Matrix,diagonalMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 12792--12794 []\T1/zi4/m/it/10 kronecker,sparseMatrix,TsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 12794--12796 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,sparseMatrix-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 12796--12798 []\T1/zi4/m/it/10 kronecker,TsparseMatrix,TsparseMatrix-method [3309] [3310] Overfull \hbox (10.8567pt too wide) in paragraph at lines 13491--13493 []\T1/zi4/m/it/10 Logic,CsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 13499--13501 []\T1/zi4/m/it/10 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in paragraph at lines 16816--16818 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3327] [3328] [3329] [3330] Overfull \hbox (0.8567pt too wide) in paragraph at lines 17675--17677 []\T1/zi4/m/it/10 qr.fitted,sparseQR,ddenseMatrix-method [3331] [3332] Overfull \hbox (0.8567pt too wide) in paragraph at lines 18043--18045 []\T1/zi4/m/it/10 rbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 18045--18047 []\T1/zi4/m/it/10 rbind2,diagonalMatrix,sparseMatrix-method [3333] Overfull \hbox (0.8567pt too wide) in paragraph at lines 18077--18079 []\T1/zi4/m/it/10 rbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 18079--18081 []\T1/zi4/m/it/10 rbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 18085--18087 []\T1/zi4/m/it/10 rbind2,sparseMatrix,sparseMatrix-method Underfull \vbox (badness 1348) has occurred while \output is active [3334] [3335] [3336] Underfull \vbox (badness 1348) has occurred while \output is active [3337] [3338] [3339] Underfull \vbox (badness 1824) has occurred while \output is active [3340] Overfull \hbox (15.01662pt too wide) in paragraph at lines 19642--19644 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3341] Overfull \hbox (15.01662pt too wide) in paragraph at lines 19644--19646 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19647--19649 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19658--19660 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19663--19665 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 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I t is guar-an-teed that [22] [23] [24] [25] [26] [27] [28] Overfull \hbox (26.88089pt too wide) in paragraph at lines 1808--1808 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 1993--1995 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3446--3448 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 2970) in paragraph at lines 4030--4036 []\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for [62] [63] [64] [65] [66] [67] [68] [69] Underfull \hbox (badness 2521) in paragraph at lines 4589--4591 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] Underfull \hbox (badness 2096) in paragraph at lines 5798--5811 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [87] [88] [89] [90] Underfull \hbox (badness 10000) in paragraph at lines 6120--6123 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [91] [92] Underfull \hbox (badness 2635) in paragraph at lines 6284--6290 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move Underfull \hbox (badness 2173) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er-ated by Underfull \hbox (badness 4441) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 Mi-crosoft ap-pli-ca-tions). If it is re-quired (it is not rec-o m-mended) when writ-ing it Underfull \hbox (badness 1895) in paragraph at lines 6284--6290 \T1/ptm/m/n/10 should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n/10 writeCha r("\ufeff", con, eos = NULL) \T1/ptm/m/n/10 or [93] Underfull \hbox (badness 3568) in paragraph at lines 6345--6352 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [94] [95] Underfull \vbox (badness 10000) has occurred while \output is active [96] [97] [98] [99] [100] [101] [102] Underfull \hbox (badness 4595) in paragraph at lines 6950--6953 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [103] Underfull \hbox (badness 2351) in paragraph at lines 7008--7011 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [104] [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 7258--7269 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [108] Underfull \hbox (badness 4479) in paragraph at lines 7330--7339 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7330--7339 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] Underfull \hbox (badness 1394) in paragraph at lines 8894--8899 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [130] [131] [132] [133] [134] Underfull \hbox (badness 1052) in paragraph at lines 9231--9236 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9231--9236 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [135] [136] Underfull \hbox (badness 10000) in paragraph at lines 9369--9373 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198 5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi ki / IEEE _ [137] [138] [139] [140] [141] [142] Underfull \hbox (badness 2150) in paragraph at lines 9760--9763 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 9774--9782 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 9815--9822 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 4569) in paragraph at lines 10854--10858 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 10854--10858 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [158] [159] [160] [161] [162] [163] [164] Underfull \hbox (badness 2698) in paragraph at lines 11398--11407 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11398--11407 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] Underfull \hbox (badness 2253) in paragraph at lines 12350--12352 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [178] [179] Underfull \hbox (badness 1565) in paragraph at lines 12411--12415 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and Underfull \hbox (badness 10000) in paragraph at lines 12454--12456 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [180] [181] Underfull \hbox (badness 1466) in paragraph at lines 12592--12595 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [182] [183] Underfull \hbox (badness 10000) in paragraph at lines 12700--12704 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12711--12714 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / [184] [185] [186] Underfull \hbox (badness 3965) in paragraph at lines 12958--12962 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] Underfull \hbox (badness 4429) in paragraph at lines 13675--13678 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [198] Underfull \hbox (badness 10000) in paragraph at lines 13761--13763 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 13767--13771 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [199] Underfull \hbox (badness 2790) in paragraph at lines 13806--13809 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 is not ap-pro-pri-ate for use within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/1 0 meth-ods: use [200] [201] [202] [203] [204] [205] [206] [207] Underfull \hbox (badness 2452) in paragraph at lines 14377--14381 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 14377--14381 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [208] [209] Underfull \hbox (badness 1092) in paragraph at lines 14528--14533 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [210] [211] [212] [213] Underfull \hbox (badness 6741) in paragraph at lines 14776--14780 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [214] [215] [216] [217] Underfull \hbox (badness 1867) in paragraph at lines 15082--15089 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [218] [219] [220] [221] Underfull \vbox (badness 10000) has occurred while \output is active [222] [223] Underfull \hbox (badness 3679) in paragraph at lines 15449--15451 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [224] [225] [226] [227] [228] [229] Underfull \hbox (badness 1478) in paragraph at lines 15929--15932 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [230] [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 16174--16176 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [233] [234] [235] [236] [237] [238] [239] [240] Underfull \hbox (badness 1442) in paragraph at lines 16708--16710 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [241] Underfull \hbox (badness 2452) in paragraph at lines 16800--16816 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [242] [243] [244] [245] [246] [247] Underfull \hbox (badness 1248) in paragraph at lines 17207--17210 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the atomic types (\T1/zi4 /m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/m/n/10 , [248] [249] [250] [251] Underfull \hbox (badness 4739) in paragraph at lines 17460--17462 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] Underfull \hbox (badness 10000) in paragraph at lines 18364--18368 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 18364--18368 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [266] Underfull \hbox (badness 1509) in paragraph at lines 18499--18506 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1354) in paragraph at lines 18499--18506 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and [267] Underfull \hbox (badness 1014) in paragraph at lines 18515--18520 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \hbox (badness 1264) in paragraph at lines 19229--19234 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [278] [279] [280] [281] [282] [283] [284] [285] [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 19977--19979 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [288] [289] [290] [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] Underfull \hbox (badness 1655) in paragraph at lines 20965--20971 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion, [304] [305] Underfull \hbox (badness 1484) in paragraph at lines 21126--21134 []\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less the OS's de-fault has been [306] [307] [308] [309] Underfull \hbox (badness 2790) in paragraph at lines 21397--21400 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 21397--21400 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [310] [311] [312] [313] Underfull \hbox (badness 1194) in paragraph at lines 21676--21679 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [314] [315] [316] Underfull \hbox (badness 10000) in paragraph at lines 21877--21880 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 21877--21880 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] Underfull \hbox (badness 1199) in paragraph at lines 22925--22931 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 22925--22931 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [332] [333] [334] [335] [336] [337] [338] [339] Underfull \hbox (badness 1038) in paragraph at lines 23464--23473 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 23474--23477 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 23493--23495 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [340] Underfull \hbox (badness 10000) in paragraph at lines 23559--23569 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 23570--23576 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 23583--23588 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 23593--23595 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [341] [342] Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\ T1/ptm/m/n/10 ' or the Eu-ro-pean mir- Underfull \hbox (badness 10000) in paragraph at lines 23833--23839 \T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d e"\T1/ptm/m/n/10 '. Can be set by [343] Underfull \hbox (badness 10000) in paragraph at lines 23845--23848 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 23869--23871 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 7203) in paragraph at lines 23897--23900 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 2735) in paragraph at lines 23907--23914 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der the CRAN OS X build), Underfull \hbox (badness 10000) in paragraph at lines 23907--23914 \T1/zi4/m/n/10 "mac.binary." \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary.mave ricks"\T1/ptm/m/n/10 . Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 23916--23923 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 23916--23923 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 23916--23923 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 23916--23923 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [344] [345] [346] [347] [348] Underfull \hbox (badness 10000) in paragraph at lines 24227--24231 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 24227--24231 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [349] [350] [351] [352] Underfull \hbox (badness 1735) in paragraph at lines 24545--24549 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [353] [354] [355] [356] [357] [358] [359] [360] Underfull \hbox (badness 2726) in paragraph at lines 25040--25043 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] Underfull \hbox (badness 1052) in paragraph at lines 25855--25860 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] Underfull \hbox (badness 1533) in paragraph at lines 26583--26586 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [383] [384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28234--28238 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 28234--28238 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 28257--28259 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [407] [408] [409] [410] [411] [412] [413] [414] Underfull \hbox (badness 1655) in paragraph at lines 28802--28804 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] Underfull \hbox (badness 10000) in paragraph at lines 29470--29473 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [425] [426] [427] Underfull \hbox (badness 2302) in paragraph at lines 29681--29688 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 29681--29688 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [428] [429] Underfull \hbox (badness 2261) in paragraph at lines 29834--29839 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [430] Underfull \hbox (badness 10000) in paragraph at lines 29861--29867 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 10000) in paragraph at lines 29937--29942 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \vbox (badness 10000) has occurred while \output is active [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] Underfull \hbox (badness 1072) in paragraph at lines 32707--32711 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 32712--32716 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 32740--32746 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 32740--32746 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 32740--32746 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in [471] Underfull \hbox (badness 3343) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 32753--32760 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [472] [473] [474] [475] Underfull \hbox (badness 10000) in paragraph at lines 33049--33055 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1152) in paragraph at lines 33049--33055 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] Underfull \hbox (badness 3333) in paragraph at lines 34770--34775 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 1472) in paragraph at lines 35377--35380 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] Underfull \hbox (badness 2671) in paragraph at lines 36039--36042 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [521] [522] [523] [524] [525] Underfull \hbox (badness 10000) in paragraph at lines 36443--36446 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [526] [527] Underfull \hbox (badness 10000) in paragraph at lines 36564--36568 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [528] Underfull \hbox (badness 10000) in paragraph at lines 36626--36630 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] Underfull \hbox (badness 1990) in paragraph at lines 37841--37849 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 37841--37849 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [546] [547] [548] [549] [550] Underfull \hbox (badness 1515) in paragraph at lines 38113--38118 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [551] [552] [553] Underfull \hbox (badness 1917) in paragraph at lines 38343--38350 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [554] [555] [556] [557] [558] [559] [560] [561] Underfull \hbox (badness 3668) in paragraph at lines 38915--38917 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [562] Underfull \hbox (badness 2401) in paragraph at lines 39020--39024 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [563] [564] [565] Underfull \hbox (badness 2111) in paragraph at lines 39189--39194 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 6542) in paragraph at lines 39205--39210 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [566] [567] [568] [569] [570] [571] [572] Underfull \hbox (badness 10000) in paragraph at lines 39639--39644 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 39639--39644 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [573] Underfull \hbox (badness 5417) in paragraph at lines 39729--39733 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [574] Underfull \hbox (badness 10000) in paragraph at lines 39790--39794 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [575]) (./compiler-pkg.tex [576] Chapter 2. [577] [578] [579]) (./datasets-pkg.tex [580] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [581] [582] [583] [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] Overfull \vbox (13.87083pt too high) has occurred while \output is active [624] Underfull \vbox (badness 1721) has occurred while \output is active [625] [626] Overfull \vbox (12.25539pt too high) has occurred while \output is active [627] [628] Overfull \vbox (17.12102pt too high) has occurred while \output is active [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] [639] Overfull \vbox (10.49593pt too high) has occurred while \output is active [640] Overfull \vbox (15.49593pt too high) has occurred while \output is active [641] Underfull \hbox (badness 1325) in paragraph at lines 3926--3929 []\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net / [642] [643] [644] [645] [646] [647] [648] [649] [650] Underfull \vbox (badness 10000) has occurred while \output is active [651] [652] [653] [654]) (./grDevices-pkg.tex Chapter 4. [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] Underfull \hbox (badness 5175) in paragraph at lines 1058--1060 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [671] [672] [673] Underfull \hbox (badness 1852) in paragraph at lines 1255--1258 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [674] [675] [676] Underfull \hbox (badness 1490) in paragraph at lines 1461--1466 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [677] Underfull \hbox (badness 2698) in paragraph at lines 1515--1518 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [678] Underfull \hbox (badness 10000) in paragraph at lines 1584--1588 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [679] [680] [681] [682] Underfull \hbox (badness 1325) in paragraph at lines 1867--1877 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [683] [684] Underfull \hbox (badness 10000) in paragraph at lines 1972--1974 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [685] [686] Underfull \hbox (badness 6758) in paragraph at lines 2133--2136 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [687] [688] [689] [690] [691] [692] [693] [694] Underfull \hbox (badness 10000) in paragraph at lines 2650--2651 Underfull \vbox (badness 10000) has occurred while \output is active [695] [696] [697] [698] [699] [700] Underfull \hbox (badness 1152) in paragraph at lines 3088--3090 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [701] [702] [703] [704] [705] Underfull \hbox (badness 2856) in paragraph at lines 3409--3412 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3423--3425 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [706] [707] Underfull \hbox (badness 1173) in paragraph at lines 3539--3549 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] Underfull \hbox (badness 1067) in paragraph at lines 4239--4246 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [718] [719] Underfull \hbox (badness 5231) in paragraph at lines 4400--4402 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 http : / / partners . adobe . com / public / [720] Underfull \hbox (badness 1789) in paragraph at lines 4477--4479 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [721] Underfull \hbox (badness 1377) in paragraph at lines 4527--4532 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues Underfull \hbox (badness 2671) in paragraph at lines 4554--4562 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as [722] Underfull \hbox (badness 1418) in paragraph at lines 4603--4610 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4611--4620 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4611--4620 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4621--4623 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [723] [724] Underfull \hbox (badness 1057) in paragraph at lines 4732--4737 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4792--4794 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [725] [726] Underfull \hbox (badness 2035) in paragraph at lines 4916--4925 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4916--4925 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4916--4925 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [727] [728] Underfull \hbox (badness 6775) in paragraph at lines 4984--4992 \T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Underfull \hbox (badness 3000) in paragraph at lines 4984--4992 \T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . com / pub / examples / nutshell / cjkv / Underfull \hbox (badness 7344) in paragraph at lines 5003--5005 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [729] [730] Underfull \hbox (badness 1546) in paragraph at lines 5123--5131 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [731] Underfull \hbox (badness 1648) in paragraph at lines 5200--5204 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [732] [733] [734] [735] [736] [737] Underfull \hbox (badness 10000) in paragraph at lines 5623--5626 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [738] [739] [740] [741] [742] [743] Underfull \hbox (badness 1189) in paragraph at lines 6019--6021 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [744] [745] Underfull \hbox (badness 10000) in paragraph at lines 6117--6119 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [746] [747] [748] [749] Underfull \hbox (badness 3780) in paragraph at lines 6408--6414 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [750] [751] Underfull \hbox (badness 2680) in paragraph at lines 6604--6606 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [752] [753] [754]) (./graphics-pkg.tex Chapter 5. [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [765] [766] [767] [768] Underfull \vbox (badness 10000) has occurred while \output is active [769] [770] [771] [772] [773] Underfull \hbox (badness 4634) in paragraph at lines 1246--1249 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] Underfull \hbox (badness 1009) in paragraph at lines 2277--2284 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \vbox (badness 10000) has occurred while \output is active [811] [812] [813] [814] Underfull \hbox (badness 1867) in paragraph at lines 3903--3907 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 1924) in paragraph at lines 4354--4359 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain Underfull \hbox (badness 2529) in paragraph at lines 4383--4386 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [822] [823] [824] [825] [826] Underfull \hbox (badness 10000) in paragraph at lines 4727--4733 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4727--4733 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [827] [828] Underfull \hbox (badness 10000) in paragraph at lines 4857--4860 [829 ] Underfull \hbox (badness 10000) in paragraph at lines 4918--4920 [830 ] [831] Underfull \hbox (badness 10000) in paragraph at lines 5111--5113 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [832] Underfull \vbox (badness 10000) has occurred while \output is active [833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6515--6516 [][] [853 ] [854] Underfull \vbox (badness 10000) has occurred while \output is active [855] [856] [857] [858] [859] [860] [861] [862] [863] Underfull \hbox (badness 1048) in paragraph at lines 7224--7229 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [864] [865] Underfull \hbox (badness 1038) in paragraph at lines 7340--7343 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] Underfull \hbox (badness 6691) in paragraph at lines 8558--8561 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8561--8563 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [885]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8643 \HeaderA{units}{Graphical Units}{units} [886] [887] [888] [889]) (./grid-pkg.tex [890] Chapter 6. [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [897] [898] [899] [900] [901] [902] [903] [904] [905] Underfull \hbox (badness 4279) in paragraph at lines 972--981 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] Underfull \hbox (badness 1067) in paragraph at lines 4342--4345 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [959] [960] [961] [962] Underfull \hbox (badness 7256) in paragraph at lines 4585--4587 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] Underfull \hbox (badness 10000) in paragraph at lines 5856--5862 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [982] [983] [984] [985] [986] [987] [988] [989] Underfull \hbox (badness 7649) in paragraph at lines 6326--6329 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [990] [991] [992] [993]) (./methods-pkg.tex [994] Chapter 7. [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] Underfull \hbox (badness 2237) in paragraph at lines 1432--1434 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 10000) in paragraph at lines 2028--2033 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2028--2033 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] Underfull \hbox (badness 10000) in paragraph at lines 2628--2631 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1029] [1030] Underfull \hbox (badness 1132) in paragraph at lines 2768--2772 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2800--2805 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1031] [1032] [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1102) in paragraph at lines 3308--3310 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1038] [1039] [1040] [1041] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Underfull \hbox (badness 1436) in paragraph at lines 4550--4553 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4579--4585 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4579--4585 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1055] [1056] [1057] [1058] [1059] [1060] [1061] Underfull \vbox (badness 10000) has occurred while \output is active [1062] [1063] Underfull \hbox (badness 1092) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5299--5302 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1064] [1065] [1066] [1067] [1068] Underfull \hbox (badness 1087) in paragraph at lines 5619--5624 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1069] [1070] [1071] Underfull \hbox (badness 2221) in paragraph at lines 5845--5850 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] Underfull \vbox (badness 10000) has occurred while \output is active [1080] [1081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6707 \aliasA{S4}{S3Part}{S4} [1082] [1083] [1084] [1085]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.6983 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.6985 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.6986 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.6988 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.6989 \aliasA{Summary}{S4groupGeneric}{Summary} Underfull \hbox (badness 2050) in paragraph at lines 7050--7054 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1086] [1087] [1088] Underfull \hbox (badness 1286) in paragraph at lines 7235--7237 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] Underfull \hbox (badness 2894) in paragraph at lines 9563--9567 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 / Underfull \hbox (badness 1852) in paragraph at lines 9642--9646 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1120] [1121] [1122] [1123]) (./parallel-pkg.tex [1124] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 3386) in paragraph at lines 1246--1249 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1143] [1144] [1145]) (./splines-pkg.tex [1146] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159]) (./stats-pkg.tex [1160] Chapter 10. [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 1412) in paragraph at lines 843--845 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 2503) in paragraph at lines 1324--1327 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1181] [1182] Underfull \hbox (badness 10000) in paragraph at lines 1503--1507 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 3965) in paragraph at lines 2163--2165 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1193] [1194] [1195] [1196] [1197] Underfull \hbox (badness 3965) in paragraph at lines 2495--2497 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] Underfull \hbox (badness 2503) in paragraph at lines 3308--3311 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 3989) in paragraph at lines 4528--4535 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] Underfull \hbox (badness 2932) in paragraph at lines 5144--5146 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1237] [1238] [1239] [1240] Underfull \hbox (badness 1142) in paragraph at lines 5385--5397 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1241] [1242] Underfull \hbox (badness 2503) in paragraph at lines 5524--5528 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1243] Underfull \hbox (badness 1168) in paragraph at lines 5585--5590 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1244] [1245] [1246] [1247] [1248] [1249] [1250] Underfull \hbox (badness 8132) in paragraph at lines 6027--6032 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1251] [1252] [1253] [1254] Underfull \hbox (badness 7081) in paragraph at lines 6297--6300 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6301--6303 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1255] [1256] [1257] [1258] [1259] Underfull \vbox (badness 10000) has occurred while \output is active [1260] [1261] [1262] [1263] [1264] [1265] [1266] Underfull \hbox (badness 10000) in paragraph at lines 7109--7112 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1267] [1268] Underfull \hbox (badness 10000) in paragraph at lines 7246--7249 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tp : / / cran . r-[]project . org / web / views / [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] Underfull \hbox (badness 2626) in paragraph at lines 8721--8724 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1291] [1292] Underfull \hbox (badness 2503) in paragraph at lines 8821--8825 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1293] [1294] [1295] [1296] [1297] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9155--9157 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] Underfull \hbox (badness 1019) in paragraph at lines 9821--9824 []\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/ 10 http : / / dlmf . [1308] [1309] [1310] Underfull \hbox (badness 4518) in paragraph at lines 10081--10086 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1311] [1312] [1313] [1314] [1315] Underfull \hbox (badness 2142) in paragraph at lines 10423--10426 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10442--10445 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1316] Underfull \hbox (badness 1708) in paragraph at lines 10504--10507 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1317] [1318] [1319] [1320] [1321] Underfull \hbox (badness 1694) in paragraph at lines 10883--10886 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1322] Underfull \hbox (badness 1867) in paragraph at lines 10902--10911 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1323] [1324] [1325] [1326] [1327] [1328] [1329]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i gnored \relax l.11349 \aliasA{hat}{influence.measures}{hat} [1330] Underfull \hbox (badness 1484) in paragraph at lines 11471--11473 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] Underfull \hbox (badness 4441) in paragraph at lines 12024--12026 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12031--12033 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1340] [1341] [1342] [1343] [1344] Underfull \hbox (badness 2894) in paragraph at lines 12365--12369 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 4518) in paragraph at lines 13059--13064 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] Underfull \hbox (badness 4518) in paragraph at lines 13706--13711 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] Underfull \hbox (badness 2503) in paragraph at lines 14906--14910 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1384] [1385] [1386] [1387] [1388] [1389] [1390] Underfull \hbox (badness 1418) in paragraph at lines 15415--15421 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] Underfull \hbox (badness 2359) in paragraph at lines 17041--17043 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1416] Underfull \vbox (badness 10000) has occurred while \output is active [1417] Underfull \vbox (badness 10000) has occurred while \output is active [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] Underfull \hbox (badness 1377) in paragraph at lines 17952--17957 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 17957--17960 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 17970--17974 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to [1430] Underfull \hbox (badness 2662) in paragraph at lines 17978--17982 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1431] [1432] Underfull \vbox (badness 10000) has occurred while \output is active [1433] [1434] [1435] [1436] [1437] [1438] [1439] Underfull \hbox (badness 1337) in paragraph at lines 18594--18597 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] Underfull \hbox (badness 5563) in paragraph at lines 19320--19322 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19323--19326 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1452] [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 2503) in paragraph at lines 19689--19692 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 19716--19718 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 10000) in paragraph at lines 20692--20698 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1337) in paragraph at lines 22007--22013 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] Underfull \hbox (badness 10000) in paragraph at lines 22800--22803 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] Underfull \hbox (badness 10000) in paragraph at lines 23375--23378 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1514] Underfull \hbox (badness 3690) in paragraph at lines 23426--23430 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1515] [1516] [1517] [1518] Underfull \hbox (badness 7667) in paragraph at lines 23692--23694 []\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je ct which is co-ercible to one by [1519] [1520] [1521] Underfull \hbox (badness 3439) in paragraph at lines 23895--23901 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 10000) in paragraph at lines 24443--24448 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] Underfull \hbox (badness 3514) in paragraph at lines 25459--25464 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1545] Underfull \hbox (badness 3514) in paragraph at lines 25521--25526 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1546] Underfull \hbox (badness 3514) in paragraph at lines 25578--25583 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1547] Underfull \hbox (badness 3514) in paragraph at lines 25639--25645 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1548] [1549] [1550] [1551] Underfull \hbox (badness 3514) in paragraph at lines 25852--25857 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1552] Underfull \hbox (badness 3514) in paragraph at lines 25908--25913 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 25965--25970 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1553] Underfull \hbox (badness 3514) in paragraph at lines 26020--26025 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1554] Underfull \hbox (badness 6691) in paragraph at lines 26089--26094 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] Underfull \hbox (badness 10000) in paragraph at lines 26611--26614 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26611--26614 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571] Underfull \hbox (badness 5431) in paragraph at lines 27217--27219 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1572] [1573] [1574] [1575] Underfull \hbox (badness 5431) in paragraph at lines 27427--27430 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1576] [1577] [1578] [1579] Underfull \hbox (badness 1337) in paragraph at lines 27739--27743 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1580] [1581] Underfull \hbox (badness 10000) in paragraph at lines 27856--27859 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1582] [1583] [1584] Underfull \hbox (badness 1616) in paragraph at lines 28039--28042 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] Underfull \hbox (badness 10000) in paragraph at lines 29161--29165 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1603] [1604] Underfull \vbox (badness 10000) has occurred while \output is active [1605] [1606] [1607] Underfull \hbox (badness 1337) in paragraph at lines 29524--29528 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 30008--30012 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] Underfull \hbox (badness 5161) in paragraph at lines 30101--30103 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 10000) in paragraph at lines 30465--30470 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1622] [1623] [1624]) (./stats4-pkg.tex Chapter 11. [1625] [1626] [1627] [1628] [1629] [1630]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1631] [1632] [1633]) (./tcltk-pkg.tex [1634] Chapter 12. [1635] [1636] [1637] [1638] [1639] [1640] [1641] Underfull \vbox (badness 10000) has occurred while \output is active [1642] Underfull \hbox (badness 1546) in paragraph at lines 649--656 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 3375) in paragraph at lines 1390--1393 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1654]) (./tools-pkg.tex Chapter 13. [1655] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1656] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1657] [1658] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1659] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1660] [1661] [1662] [1663] [1664] [1665] [1666] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1667] [1668] [1669] [1670] Underfull \hbox (badness 1635) in paragraph at lines 1048--1050 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1671] Underfull \hbox (badness 4441) in paragraph at lines 1117--1125 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- Underfull \hbox (badness 1014) in paragraph at lines 1137--1139 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies [1672] Underfull \hbox (badness 10000) in paragraph at lines 1166--1169 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1166--1169 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1673] [1674] Underfull \hbox (badness 10000) in paragraph at lines 1294--1296 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1675] [1676] Underfull \hbox (badness 7981) in paragraph at lines 1464--1468 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1470--1472 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1677] [1678] [1679] [1680]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1666 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1681] Underfull \hbox (badness 5726) in paragraph at lines 1792--1797 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1792--1797 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 7981) in paragraph at lines 2183--2189 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1689] [1690] [1691] [1692] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2442. [1693] [1694] [1695] Underfull \hbox (badness 1424) in paragraph at lines 2679--2681 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 10000) in paragraph at lines 3369--3371 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 1838) in paragraph at lines 3706--3712 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3706--3712 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1711] Underfull \hbox (badness 5726) in paragraph at lines 3786--3791 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3786--3791 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1712] [1713] Underfull \hbox (badness 1688) in paragraph at lines 3928--3940 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1714] [1715] [1716] [1717]) (./utils-pkg.tex [1718] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1719] [1720] [1721] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1722] [1723] [1724] [1725] [1726] Underfull \hbox (badness 10000) in paragraph at lines 536--542 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 536--542 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1727] [1728] Underfull \hbox (badness 5847) in paragraph at lines 647--653 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 647--653 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as Underfull \hbox (badness 3861) in paragraph at lines 715--720 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] Underfull \hbox (badness 1371) in paragraph at lines 1298--1300 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 2057) in paragraph at lines 1747--1749 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1744] [1745] Underfull \hbox (badness 10000) in paragraph at lines 1841--1843 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1746] Underfull \hbox (badness 5189) in paragraph at lines 1931--1933 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1747] Underfull \vbox (badness 10000) has occurred while \output is active [1748] [1749] Underfull \hbox (badness 1661) in paragraph at lines 2146--2153 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- [1750] Underfull \hbox (badness 1990) in paragraph at lines 2163--2166 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1751] [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] Underfull \hbox (badness 1430) in paragraph at lines 3155--3161 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 2837) in paragraph at lines 3155--3161 \T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t he plat-form and scheme, but set-ting Underfull \hbox (badness 1231) in paragraph at lines 3195--3201 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.3967 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.3967 ...mat Unordered and Ordered Lists}{format} [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] Underfull \hbox (badness 1371) in paragraph at lines 4915--4917 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1791] [1792] Underfull \hbox (badness 1502) in paragraph at lines 5004--5009 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5004--5009 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1793] [1794] Underfull \hbox (badness 10000) in paragraph at lines 5166--5175 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1795] [1796] Underfull \hbox (badness 3118) in paragraph at lines 5283--5285 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5316--5320 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1797] Underfull \hbox (badness 1348) in paragraph at lines 5434--5439 []\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages which these pack- Underfull \hbox (badness 3884) in paragraph at lines 5434--5439 \T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively) . Not Underfull \hbox (badness 1466) in paragraph at lines 5434--5439 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1798] Underfull \hbox (badness 10000) in paragraph at lines 5460--5464 []\T1/ptm/m/n/10 Possible val-ues are (cur-rently) \T1/zi4/m/sl/10 "source"\T1/ ptm/m/n/10 , \T1/zi4/m/sl/10 "mac.binary"\T1/ptm/m/n/10 , Underfull \hbox (badness 1629) in paragraph at lines 5460--5464 \T1/zi4/m/sl/10 "mac.binary.mavericks" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "win. binary"\T1/ptm/m/n/10 : the bi-nary types can be [1799] Underfull \hbox (badness 10000) in paragraph at lines 5518--5521 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5518--5521 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1800] Underfull \hbox (badness 10000) in paragraph at lines 5649--5654 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] Underfull \hbox (badness 10000) in paragraph at lines 6810--6812 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 6815--6820 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1819] [1820] Underfull \hbox (badness 10000) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p tm/m/n/10 re-turned by Underfull \hbox (badness 10000) in paragraph at lines 6972--6975 [][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1 0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els [1821] [1822] [1823] [1824] [1825] [1826] Underfull \hbox (badness 1789) in paragraph at lines 7353--7355 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] Underfull \hbox (badness 1097) in paragraph at lines 8174--8177 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1838] [1839] Underfull \hbox (badness 3000) in paragraph at lines 8305--8310 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] Underfull \hbox (badness 2134) in paragraph at lines 8879--8884 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] Underfull \hbox (badness 10000) in paragraph at lines 9820--9822 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs / [1862] [1863] [1864] Underfull \hbox (badness 10000) in paragraph at lines 9998--10002 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 10029--10035 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1865] Underfull \hbox (badness 2096) in paragraph at lines 10147--10150 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10151--10154 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1866] Underfull \hbox (badness 1009) in paragraph at lines 10217--10228 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1867] [1868] [1869] [1870] [1871] Underfull \hbox (badness 3780) in paragraph at lines 10509--10513 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 10524--10527 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1872] [1873] [1874] [1875] [1876] Underfull \hbox (badness 5970) in paragraph at lines 10893--10896 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 3449) in paragraph at lines 10904--10913 []\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/ 10 ar-gu-ment's spec-i-fi-ca-tion should be fol- Underfull \hbox (badness 2512) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut" , "wrap")\T1/ptm/m/n/10 . De- Underfull \hbox (badness 1824) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po -nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 options[][][]\T1/ptm/m/n/10 ) Underfull \hbox (badness 3769) in paragraph at lines 10904--10913 \T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses [1877] [1878] [1879] Underfull \hbox (badness 10000) in paragraph at lines 11072--11074 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 10000) in paragraph at lines 11469--11472 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11469--11472 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 10000) in paragraph at lines 11993--11995 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 11996--11998 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [1893] Underfull \hbox (badness 10000) in paragraph at lines 12026--12031 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 12026--12031 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 12055--12058 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [1894] [1895] [1896] [1897] [1898] Underfull \hbox (badness 1454) in paragraph at lines 12358--12362 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [1899] Underfull \hbox (badness 10000) in paragraph at lines 12428--12430 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [1900] [1901] [1902]) [1903] [1904] (./KernSmooth-pkg.tex Chapter 15. [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914]) (./MASS-pkg.tex Chapter 16. [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] Underfull \hbox (badness 7256) in paragraph at lines 1601--1603 []\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo r [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] Underfull \hbox (badness 7944) in paragraph at lines 2691--2694 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [1952] [1953] [1954] Underfull \hbox (badness 2384) in paragraph at lines 2861--2866 []\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m /sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \ T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "f"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2861--2866 \T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/ 10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 , Underfull \hbox (badness 1052) in paragraph at lines 2861--2866 \T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1 /ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1 /ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are [1955] [1956] Underfull \hbox (badness 4686) in paragraph at lines 3029--3031 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 3043--3047 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [1957] [1958] [1959] Underfull \hbox (badness 10000) in paragraph at lines 3231--3233 []\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/ 10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with [1960] [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] Underfull \hbox (badness 10000) in paragraph at lines 4808--4811 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [1982] Underfull \hbox (badness 10000) in paragraph at lines 4886--4889 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 1975) in paragraph at lines 5339--5341 []\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in the case of [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997] [1998] [1999]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has be en already used, duplicate ignored \relax l.6129 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6129 ...sical N, P, K Factorial Experiment}{npk} [2000] Underfull \hbox (badness 1931) in paragraph at lines 6247--6251 []\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space . That is [2001] [2002] [2003] [2004] Underfull \vbox (badness 10000) has occurred while \output is active [2005] [2006] [2007] [2008] [2009] [2010] [2011] [2012] Underfull \hbox (badness 10000) in paragraph at lines 7096--7103 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2013] Underfull \hbox (badness 3138) in paragraph at lines 7167--7173 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2014] [2015] [2016] Underfull \hbox (badness 6775) in paragraph at lines 7346--7349 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2017] [2018] [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 4686) in paragraph at lines 7979--7981 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 7995--7999 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] Underfull \hbox (badness 1259) in paragraph at lines 9379--9381 []\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e x-pected fre-quen-cies in the re-sult. Us-ing [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061]) (./Matrix-pkg.tex [2062] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 42--45 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 42--45 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2063] Underfull \hbox (badness 1769) in paragraph at lines 96--99 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2064] [2065] [2066] [2067] Underfull \hbox (badness 5119) in paragraph at lines 506--510 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2068] [2069] Underfull \hbox (badness 2418) in paragraph at lines 593--596 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2070] [2071] Underfull \hbox (badness 10000) in paragraph at lines 735--738 []\T1/ptm/m/n/10 In some ver-sions of \T1/phv/m/n/10 R\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 eigen[][][](CAex) \T1/ptm/m/n/10 fell into an in-fi-nite loop (wher eas [2072] [2073] Underfull \hbox (badness 1635) in paragraph at lines 948--950 []\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/ n/10 (or equiv-a-lently, [2074] [2075]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1060 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1060 ...- 'Matrix' S4 Generic and Methods}{chol} [2076pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,dsCMatrix.Rdash.method}) ha s been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1135 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2077] [2078] Underfull \hbox (badness 2277) in paragraph at lines 1314--1317 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use Underfull \hbox (badness 5741) in paragraph at lines 1361--1365 []\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion [][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra [2079] [2080] Underfull \hbox (badness 3189) in paragraph at lines 1457--1464 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("Cholesky", ...) \T1/ptm/m/n/10 or Underfull \hbox (badness 1097) in paragraph at lines 1486--1489 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1492--1496 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2081]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1549 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1549 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1550 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1571 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1582 \aliasA{rowSums}{colSums}{rowSums} [2082] [2083] [2084] Underfull \hbox (badness 3547) in paragraph at lines 1757--1760 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2085] [2086] [2087] [2088] [2089] Underfull \hbox (badness 2142) in paragraph at lines 2177--2181 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dgCMatrix", ...)\T1/ptm/m/n/10 , more Underfull \hbox (badness 3039) in paragraph at lines 2177--2181 \T1/ptm/m/n/10 typ-i-cally via \T1/zi4/m/sl/10 as(*, "CsparseMatrix") \T1/ptm/m /n/10 or sim-i-lar. Of-ten how-ever, more eas-ily via [2090] [2091] [2092] [2093] Underfull \hbox (badness 10000) in paragraph at lines 2486--2490 []\T1/ptm/m/n/10 Note that both \T1/zi4/m/sl/10 new(.) \T1/ptm/m/n/10 and [][]\ T1/zi4/m/sl/10 spMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (and other [2094] Underfull \hbox (badness 6842) in paragraph at lines 2572--2575 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2095] [2096] Underfull \hbox (badness 10000) in paragraph at lines 2850--2852 []\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2097] [2098] Underfull \hbox (badness 10000) in paragraph at lines 3099--3101 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr efer-able to (and more ef-fi-cient than) [2099] [2100] [2101] Underfull \hbox (badness 2717) in paragraph at lines 3376--3380 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsCMatrix", ...) \T1/ptm/m/n/10 or [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 2318) in paragraph at lines 3803--3807 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 10000) in paragraph at lines 4225--4230 []\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite Tay-lor se-ries [2113] [2114] [2115] Overfull \hbox (4.38089pt too wide) in paragraph at lines 4359--4359 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (49.38089pt too wide) in paragraph at lines 4362--4362 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2116] [2117] Underfull \hbox (badness 1931) in paragraph at lines 4587--4589 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2118] [2119] [2120] [2121] [2122] Underfull \hbox (badness 5862) in paragraph at lines 4892--4895 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2123] Underfull \hbox (badness 3229) in paragraph at lines 5024--5033 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2124] Underfull \hbox (badness 2698) in paragraph at lines 5065--5067 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2125] [2126] Underfull \hbox (badness 2846) in paragraph at lines 5175--5177 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con- tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault, [2127] [2128] [2129] Underfull \hbox (badness 2253) in paragraph at lines 5452--5455 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2130] [2131] [2132] [2133] Underfull \hbox (badness 5548) in paragraph at lines 5749--5752 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2134] Underfull \hbox (badness 2478) in paragraph at lines 5861--5866 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2135] Underfull \hbox (badness 10000) in paragraph at lines 5869--5872 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2136] Underfull \hbox (badness 4120) in paragraph at lines 6042--6045 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2137] Underfull \hbox (badness 10000) in paragraph at lines 6140--6143 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2138] Underfull \hbox (badness 10000) in paragraph at lines 6215--6218 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2139] Underfull \hbox (badness 2050) in paragraph at lines 6286--6289 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2140] [2141] [2142] Underfull \hbox (badness 6268) in paragraph at lines 6480--6483 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), Underfull \hbox (badness 6268) in paragraph at lines 6504--6508 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2143]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6596 \aliasA{det}{Matrix-class}{det} [2144] Underfull \hbox (badness 1205) in paragraph at lines 6687--6690 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6692--6695 [2145]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.6761 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.6851 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.6933 ...tcrossprod}{matrix-products}{tcrossprod} [2146pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7051 \end{Arguments} pdfTeX warning (ext4): destination with the same identifi er (name{Rfn.tcrossprod.Rdash.methods}) has been already used, duplicate ignore d \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7051 \end{Arguments} ] Underfull \hbox (badness 2698) in paragraph at lines 7071--7076 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2147] Underfull \hbox (badness 1430) in paragraph at lines 7168--7173 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2148] Underfull \hbox (badness 5548) in paragraph at lines 7237--7240 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2149] Underfull \hbox (badness 2368) in paragraph at lines 7289--7291 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1 /ptm/m/n/10 should be done, af-ter [2150] [2151] Underfull \vbox (badness 10000) has occurred while \output is active [2152] Underfull \hbox (badness 2478) in paragraph at lines 7492--7497 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7500--7503 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2153] [2154] [2155]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) has been already used, duplicate ignored \relax l.7724 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.7724 \HeaderA{norm}{Matrix Norms}{norm} [2156] [2157] Underfull \hbox (badness 4120) in paragraph at lines 7971--7974 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2158] Underfull \hbox (badness 10000) in paragraph at lines 8061--8064 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2159] Underfull \hbox (badness 10000) in paragraph at lines 8137--8140 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2160] Underfull \hbox (badness 4193) in paragraph at lines 8263--8265 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth er sig-na-tures (use [2161] Underfull \hbox (badness 1237) in paragraph at lines 8271--8278 []\T1/zi4/m/sl/10 signature(from = "pMatrix", to = "matrix")\T1/ptm/m/n/10 : co -er-cion to a tra-di-tional [2162] [2163] [2164]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8488 \aliasA{qr}{qr-methods}{qr} Underfull \hbox (badness 5119) in paragraph at lines 8530--8533 []\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma- trix with [2165] Underfull \hbox (badness 10000) in paragraph at lines 8599--8605 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [2166] [2167]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.rcond}) has been already used, duplicate ignored \relax l.8723 ... the Reciprocal Condition Number}{rcond} [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9292 \aliasA{solve}{solve-methods}{solve} [2176] Underfull \hbox (badness 10000) in paragraph at lines 9429--9441 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a Underfull \hbox (badness 10000) in paragraph at lines 9455--9462 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 10000) in paragraph at lines 9468--9478 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list [2177] Underfull \hbox (badness 1122) in paragraph at lines 9502--9504 []\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T 1/ptm/m/n/10 , Underfull \hbox (badness 1210) in paragraph at lines 9516--9519 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and [2178] Underfull \hbox (badness 10000) in paragraph at lines 9586--9589 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame Underfull \hbox (badness 10000) in paragraph at lines 9622--9625 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 9633--9637 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2179] [2180] [2181] [2182] [2183] [2184] Underfull \vbox (badness 10000) has occurred while \output is active [2185] [2186] [2187]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.qr.Q}) has been already used, duplicate ignored \relax l.10284 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2188] [2189]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.toeplitz}) has been already use d, duplicate ignored \relax l.10559 ...toeplitz}{sparseVector-class}{toeplitz} [2190] Underfull \hbox (badness 10000) in paragraph at lines 10644--10647 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2191] [2192] Underfull \hbox (badness 2653) in paragraph at lines 10774--10780 [][][]\T1/zi4/m/sl/10 Matrix[][][](*, sparse=TRUE) \T1/ptm/m/n/10 for the more usual con-struc-tor of such ma-tri-ces; sim-i-larly, [2193] [2194] Underfull \hbox (badness 2057) in paragraph at lines 10930--10932 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2195] [2196] [2197] Underfull \hbox (badness 1831) in paragraph at lines 11085--11091 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2198] [2199] [2200] [2201] [2202] Underfull \hbox (badness 6910) in paragraph at lines 11533--11535 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2203]) (./boot-pkg.tex [2204] Chapter 18. [2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214] Underfull \hbox (badness 1097) in paragraph at lines 788--796 []\T1/ptm/m/n/10 For most of the \T1/zi4/m/sl/10 boot \T1/ptm/m/n/10 meth-ods t he re-sam-pling is done in the mas-ter pro-cess, but not if Underfull \hbox (badness 4954) in paragraph at lines 797--807 \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d e-fault clus-ter, a sec-ond ap-proach is used if [2215] Underfull \hbox (badness 1881) in paragraph at lines 824--826 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2216] Underfull \vbox (badness 10000) has occurred while \output is active [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues [2219] Underfull \hbox (badness 2150) in paragraph at lines 1103--1109 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2220] [2221] [2222] [2223] Underfull \hbox (badness 1571) in paragraph at lines 1443--1445 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2224] [2225] [2226] [2227] [2228] [2229] Underfull \hbox (badness 1005) in paragraph at lines 1797--1804 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2230] [2231] Underfull \vbox (badness 10000) has occurred while \output is active [2232] [2233] Underfull \hbox (badness 7379) in paragraph at lines 2081--2083 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2234] [2235] [2236] Underfull \hbox (badness 1565) in paragraph at lines 2335--2340 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2237] Underfull \hbox (badness 1881) in paragraph at lines 2429--2431 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2238] [2239] Underfull \hbox (badness 2970) in paragraph at lines 2533--2537 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2533--2537 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] Underfull \hbox (badness 10000) in paragraph at lines 4187--4189 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2264] [2265] [2266] Underfull \hbox (badness 2393) in paragraph at lines 4386--4389 []\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by [2267] [2268] [2269] [2270] [2271] [2272] [2273] [2274] Underfull \hbox (badness 3000) in paragraph at lines 4956--4959 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2275] [2276] [2277] [2278] Underfull \hbox (badness 2293) in paragraph at lines 5235--5238 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5235--5238 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] Underfull \hbox (badness 4954) in paragraph at lines 6016--6019 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297] [2298] Underfull \hbox (badness 1596) in paragraph at lines 6737--6741 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308]) (./class-pkg.tex Chapter 19. [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] Underfull \hbox (badness 10000) in paragraph at lines 608--610 []\T1/ptm/m/n/10 the size of the code-book. De-faults to [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324]) (./cluster-pkg.tex Chapter 20. [2325] [2326] [2327] [2328] [2329] Underfull \vbox (badness 7685) has occurred while \output is active [2330] [2331] [2332] [2333] [2334] Underfull \hbox (badness 4144) in paragraph at lines 680--683 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2335] [2336] [2337] Underfull \hbox (badness 10000) in paragraph at lines 847--849 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2338] Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is [2339] [2340] [2341] Underfull \hbox (badness 6110) in paragraph at lines 1112--1116 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2342] [2343] [2344] [2345] [2346] Underfull \hbox (badness 2503) in paragraph at lines 1490--1493 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2347] [2348] [2349] [2350] [2351] [2352] [2353] [2354] Underfull \hbox (badness 10000) in paragraph at lines 2057--2059 []\T1/ptm/m/n/10 logical in-di-cat-ing if the con-verged. This is de-fined as Underfull \hbox (badness 10000) in paragraph at lines 2081--2087 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2355] [2356] [2357] [2358] Underfull \hbox (badness 6675) in paragraph at lines 2316--2318 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2359] [2360] [2361] [2362] [2363] [2364] Underfull \hbox (badness 1616) in paragraph at lines 2734--2739 []\T1/ptm/m/n/10 The de-fault \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 (or in-te-ge r \T1/zi4/m/sl/10 0\T1/ptm/m/n/10 ) cor-re-sponds to the orig-i-nal ``swap'' al -go-rithm, whereas Underfull \hbox (badness 2980) in paragraph at lines 2772--2776 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2365] [2366] [2367] [2368] [2369] Underfull \hbox (badness 1142) in paragraph at lines 3110--3113 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2370] [2371] Underfull \hbox (badness 1142) in paragraph at lines 3229--3232 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2372] [2373] [2374] [2375] Underfull \hbox (badness 2582) in paragraph at lines 3452--3457 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2376] Underfull \hbox (badness 10000) in paragraph at lines 3538--3543 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 , Underfull \hbox (badness 4378) in paragraph at lines 3538--3543 \T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T 1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider [2377] [2378] [2379] [2380] Underfull \hbox (badness 10000) in paragraph at lines 3828--3830 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2381] [2382] [2383] [2384] Underfull \hbox (badness 4108) in paragraph at lines 4052--4057 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col [2385] Underfull \hbox (badness 1062) in paragraph at lines 4107--4109 []\T1/ptm/m/n/10 numeric (rank 1) ar-ray of clus-ter-wise \T1/ptm/m/it/10 means \T1/ptm/m/n/10 of sil-hou-ette widths where Underfull \hbox (badness 1383) in paragraph at lines 4129--4134 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2386] [2387] [2388] [2389] [2390] [2391] [2392] [2393] [2394]) (./codetools-pkg.tex Chapter 21. [2395] [2396] [2397] [2398] [2399]) (./foreign-pkg.tex [2400] Chapter 22. Underfull \hbox (badness 1331) in paragraph at lines 33--37 \T1/ptm/m/n/10 (XPORT) For-mat'' avail-able as [][]$\T1/zi4/m/sl/10 http : / / ftp . sas . com / techsup / download / technote / ts140 . [2401] [2402] [2403] [2404] [2405] [2406] [2407] [2408] [2409] [2410] [2411] Underfull \hbox (badness 10000) in paragraph at lines 730--731 [2412] Underfull \hbox (badness 1642) in paragraph at lines 785--789 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of a Data Set in SAS [2413] [2414] [2415] [2416] [2417] [2418] Underfull \hbox (badness 10000) in paragraph at lines 1183--1189 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2419] [2420]) (./lattice-pkg.tex Chapter 23. [2421] [2422] [2423] [2424] [2425] [2426] Underfull \hbox (badness 10000) in paragraph at lines 480--485 []\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales \T1/ptm/m/n/10 in this case may be Underfull \hbox (badness 1237) in paragraph at lines 480--485 \T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh ich would usu-ally [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] [2435] [2436] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2437] [2438] [2439] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2440] [2441] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2442] [2443] [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2447] [2448] [2449] [2450] Underfull \hbox (badness 7064) in paragraph at lines 2364--2368 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2451] [2452] Underfull \hbox (badness 7064) in paragraph at lines 2549--2556 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2453] [2454] [2455] Underfull \hbox (badness 3291) in paragraph at lines 2763--2768 []\T1/ptm/m/n/10 for the \T1/zi4/m/sl/10 formula \T1/ptm/m/n/10 method, a for-m ula of the form \T1/zi4/m/sl/10 z ~ x * y [2456] Underfull \hbox (badness 2781) in paragraph at lines 2850--2852 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2457] Underfull \hbox (badness 2486) in paragraph at lines 2961--2965 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2458] [2459] [2460] Underfull \hbox (badness 10000) in paragraph at lines 3112--3120 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f or-mula of the form \T1/zi4/m/sl/10 z ~ x [2461] [2462] [2463] [2464]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3433 \aliasA{parallel}{B\_08\_splom}{parallel} [2465] [2466] [2467] [2468] [2469] [2470] [2471] Underfull \hbox (badness 5696) in paragraph at lines 3924--3928 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 3271) in paragraph at lines 3924--3928 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3924--3928 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2472] [2473] Underfull \hbox (badness 1173) in paragraph at lines 4063--4067 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4090--4092 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2474] [2475] [2476] Underfull \hbox (badness 3492) in paragraph at lines 4286--4296 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4311--4314 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4314--4316 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2477] [2478] [2479] [2480] [2481] [2482] [2483] [2484] [2485] [2486] Underfull \hbox (badness 6157) in paragraph at lines 5037--5040 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2487] [2488] [2489] [2490] [2491] [2492] Underfull \hbox (badness 10000) in paragraph at lines 5488--5491 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5488--5491 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2493] [2494] [2495] [2496] [2497] Underfull \hbox (badness 4805) in paragraph at lines 5848--5852 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5859--5866 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5859--5866 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5859--5866 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5859--5866 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5859--5866 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2498] [2499] [2500] [2501] Underfull \hbox (badness 4242) in paragraph at lines 6159--6164 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6159--6164 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2502] [2503] Underfull \hbox (badness 2310) in paragraph at lines 6275--6280 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2504] [2505] [2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515] [2516] [2517] [2518] Underfull \hbox (badness 2012) in paragraph at lines 7327--7330 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2519] [2520] Underfull \hbox (badness 3333) in paragraph at lines 7499--7501 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2521] [2522] [2523] [2524] [2525] [2526] Underfull \hbox (badness 1436) in paragraph at lines 7909--7915 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for Underfull \hbox (badness 1661) in paragraph at lines 7909--7915 \T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e nce.line'' pa-ram-e-ter set- Underfull \hbox (badness 1231) in paragraph at lines 7909--7915 \T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti ngs. The [2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] Underfull \hbox (badness 10000) in paragraph at lines 8467--8470 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8513--8515 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2535] [2536] [2537] Underfull \hbox (badness 3895) in paragraph at lines 8674--8677 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2538] Underfull \hbox (badness 1515) in paragraph at lines 8750--8754 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2539] Underfull \hbox (badness 6316) in paragraph at lines 8856--8861 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2540] Underfull \hbox (badness 5908) in paragraph at lines 8873--8876 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2541] [2542] [2543] [2544] Overfull \hbox (29.94879pt too wide) in paragraph at lines 9161--9165 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left, right, left.name, right.name, condition Overfull \hbox (20.63074pt too wide) in paragraph at lines 9161--9165 \T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left, right.x, right.y, left.nam e, right.x.name, right.y.name, condition [2545] [2546] [2547] [2548] [2549] [2550] [2551] [2552] [2553] [2554]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9850 \aliasA{melanoma}{H\_melanoma}{melanoma} [2555] [2556] [2557] [2558]) (./mgcv-pkg.tex Chapter 24. Underfull \hbox (badness 1052) in paragraph at lines 40--42 []\T1/ptm/m/n/10 selects ex-act test statis-tic to use for sin-gle smooth term p-values. See [2559] [2560] [2561] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 193--198 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2562] Underfull \hbox (badness 2626) in paragraph at lines 248--251 []\T1/ptm/m/n/10 If all smooths are P-splines and all ten-sor prod-ucts are of the form [2563] [2564] [2565] [2566] [2567] Underfull \hbox (badness 1158) in paragraph at lines 563--565 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2568] [2569] Underfull \vbox (badness 10000) has occurred while \output is active [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] [2582] [2583] [2584] [2585] [2586] [2587] Underfull \hbox (badness 1142) in paragraph at lines 1783--1787 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2588] Underfull \hbox (badness 1043) in paragraph at lines 1806--1811 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2589] [2590] [2591] [2592] [2593] Underfull \vbox (badness 10000) has occurred while \output is active [2594] Underfull \vbox (badness 10000) has occurred while \output is active [2595] [2596] [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] Underfull \hbox (badness 10000) in paragraph at lines 3038--3042 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2608] [2609] Underfull \vbox (badness 10000) has occurred while \output is active [2610] [2611] [2612] [2613] [2614] [2615] [2616] [2617] [2618] [2619] [2620] Underfull \hbox (badness 1142) in paragraph at lines 3855--3859 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2621] [2622] Underfull \hbox (badness 1231) in paragraph at lines 3951--3953 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2623] [2624] Underfull \vbox (badness 10000) has occurred while \output is active [2625] [2626] [2627] Underfull \hbox (badness 2181) in paragraph at lines 4287--4288 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] [2637] [2638] [2639] Underfull \vbox (badness 10000) has occurred while \output is active [2640] [2641] [2642] [2643] [2644] [2645] [2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] [2657] [2658] Underfull \hbox (badness 6001) in paragraph at lines 6230--6232 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2659] [2660] [2661] [2662] [2663] [2664] [2665] [2666] [2667] Underfull \vbox (badness 10000) has occurred while \output is active [2668] [2669] Underfull \hbox (badness 1038) in paragraph at lines 6923--6926 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6923--6926 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2670] Underfull \hbox (badness 10000) in paragraph at lines 6979--6982 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] Overfull \hbox (21.78088pt too wide) in paragraph at lines 7554--7554 [] \T1/zi4/m/sl/10 block.size=50000,newdata.guaranteed=FALSE,na.action= na.pass,cluster=NULL,...)[] [2680] Underfull \hbox (badness 1852) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2681] [2682] Underfull \hbox (badness 1852) in paragraph at lines 7775--7778 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2683] [2684] Underfull \vbox (badness 10000) has occurred while \output is active [2685] [2686] Underfull \hbox (badness 1205) in paragraph at lines 7983--7985 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 7983--7985 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 7989--7994 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2687] Underfull \hbox (badness 1205) in paragraph at lines 8073--8075 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 8073--8075 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2688] [2689] Underfull \vbox (badness 10000) has occurred while \output is active [2690] Underfull \hbox (badness 1253) in paragraph at lines 8272--8274 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2691] [2692] [2693] [2694] Underfull \hbox (badness 4792) in paragraph at lines 8458--8461 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 8458--8461 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2695] Underfull \hbox (badness 10000) in paragraph at lines 8537--8540 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2696] [2697] [2698] [2699] [2700] [2701] [2702] [2703] Underfull \hbox (badness 1975) in paragraph at lines 9055--9060 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2704] [2705] Underfull \hbox (badness 1762) in paragraph at lines 9144--9156 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2706] [2707] [2708] Underfull \hbox (badness 7667) in paragraph at lines 9354--9360 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2709] Underfull \hbox (badness 10000) in paragraph at lines 9395--9396 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2710] Underfull \vbox (badness 10000) has occurred while \output is active [2711] Underfull \hbox (badness 10000) in paragraph at lines 9524--9526 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2712] [2713] Underfull \hbox (badness 10000) in paragraph at lines 9652--9653 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2714] [2715] [2716] Underfull \hbox (badness 1436) in paragraph at lines 9790--9795 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2717] [2718] [2719] [2720] [2721] [2722] [2723] Underfull \hbox (badness 10000) in paragraph at lines 10237--10243 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a [2724] [2725] [2726] Underfull \vbox (badness 10000) has occurred while \output is active [2727] Underfull \vbox (badness 10000) has occurred while \output is active [2728] Overfull \hbox (7.9809pt too wide) in paragraph at lines 10535--10535 []\T1/zi4/m/n/9 b <- gam(z~s(x,y,k=c(30,15),bs="so",xt=list(bnd=bnd,nmax=nmax) ),knots=knots,method="REML")[] [2729] Underfull \hbox (badness 10000) in paragraph at lines 10581--10582 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2730] [2731] [2732] [2733] Underfull \hbox (badness 3895) in paragraph at lines 10841--10846 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2734] Underfull \hbox (badness 10000) in paragraph at lines 10886--10888 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2735] [2736] [2737] Underfull \hbox (badness 1371) in paragraph at lines 11067--11073 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see [2738] Underfull \hbox (badness 10000) in paragraph at lines 11107--11111 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11107--11111 \T1/ptm/m/n/10 code[][]soap[][][], code[][]Spherical.Spline[][][], [][]\T1/zi4/ m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.defined. smooth[][][]\T1/ptm/m/n/10 , [2739] Underfull \hbox (badness 2326) in paragraph at lines 11174--11181 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2740] Underfull \hbox (badness 2158) in paragraph at lines 11259--11259 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] Underfull \vbox (badness 10000) has occurred while \output is active [2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759] [2760] [2761] [2762] Underfull \hbox (badness 1796) in paragraph at lines 12612--12615 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [2763] [2764] [2765] [2766] [2767]) (./nlme-pkg.tex [2768] Chapter 25. [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] [2777] [2778] [2779] [2780] [2781] [2782] [2783] [2784] [2785] [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] [2796] [2797] [2798] Underfull \hbox (badness 2875) in paragraph at lines 1997--2003 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1997--2003 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [2799] [2800] [2801] [2802] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [2803] [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821] [2822] [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 1067) in paragraph at lines 4412--4417 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844] [2845] [2846] [2847] Underfull \hbox (badness 10000) in paragraph at lines 5158--5162 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [2848] [2849] [2850] [2851] [2852] [2853] [2854] Underfull \hbox (badness 10000) in paragraph at lines 5590--5593 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [2855] [2856] [2857] [2858] [2859] [2860] [2861] Underfull \hbox (badness 10000) in paragraph at lines 5971--5976 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [2862] [2863] [2864] [2865] Underfull \hbox (badness 1490) in paragraph at lines 6241--6252 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [2866] Underfull \hbox (badness 10000) in paragraph at lines 6305--6307 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2867] [2868] [2869] [2870] [2871] [2872] Underfull \hbox (badness 10000) in paragraph at lines 6716--6718 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2873] [2874] [2875] [2876] Underfull \hbox (badness 10000) in paragraph at lines 6986--6993 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [2877] [2878] [2879] [2880] Underfull \hbox (badness 10000) in paragraph at lines 7248--7253 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [2881] [2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892] Underfull \hbox (badness 1642) in paragraph at lines 8030--8052 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [2893] [2894] Underfull \hbox (badness 1642) in paragraph at lines 8202--8224 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [2895] [2896] [2897] [2898] [2899] Underfull \hbox (badness 10000) in paragraph at lines 8509--8511 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2900] [2901] [2902] [2903] Underfull \hbox (badness 10000) in paragraph at lines 8772--8779 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] Underfull \hbox (badness 10000) in paragraph at lines 9297--9304 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [2913] [2914] [2915] [2916] [2917]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9659 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9659 ...rA{Matrix}{Assign Matrix Values}{Matrix} [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] [2929] Underfull \hbox (badness 1596) in paragraph at lines 10435--10461 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [2930] [2931] Underfull \hbox (badness 1490) in paragraph at lines 10573--10579 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [2932] [2933] [2934] [2935] Underfull \hbox (badness 10000) in paragraph at lines 10808--10810 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [2936] [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] Underfull \hbox (badness 1286) in paragraph at lines 13663--13670 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] Underfull \hbox (badness 1215) in paragraph at lines 14191--14193 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [2986] [2987] [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15072 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15072 ...Extract Random Effects}{random.effects} [2999] [3000] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] [3009] Underfull \hbox (badness 1067) in paragraph at lines 15783--15788 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3010] [3011] [3012] [3013] Underfull \hbox (badness 1448) in paragraph at lines 16026--16035 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3014] [3015] Underfull \hbox (badness 10000) in paragraph at lines 16154--16172 []\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form Underfull \hbox (badness 1406) in paragraph at lines 16154--16172 \T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+ ...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for [3016] [3017] [3018] [3019] [3020] [3021] [3022] [3023] [3024] Underfull \hbox (badness 1728) in paragraph at lines 16731--16734 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3025] [3026] [3027] [3028] Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 []\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T 1/zi4/m/sl/10 pdMat Underfull \hbox (badness 6725) in paragraph at lines 17064--17073 \T1/ptm/m/n/10 class. De-fault de-pends on the method func-tion: \T1/zi4/m/sl/1 0 "Blocked" \T1/ptm/m/n/10 for Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \ T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D iagonal" Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Mult iple of an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/zi4/m/sl/10 "General Positive-Definite, Natural Parametrization" Underfull \hbox (badness 10000) in paragraph at lines 17064--17073 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "G eneral Positive-Definite" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdSymm\T1/ptm/m/n/ 10 , and [3029] Underfull \hbox (badness 10000) in paragraph at lines 17128--17136 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for Underfull \hbox (badness 2486) in paragraph at lines 17128--17136 \T1/zi4/m/sl/10 "Different standard deviations per stratum" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varIdent\T1/ptm/m/n/10 , [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] Underfull \hbox (badness 10000) in paragraph at lines 17904--17914 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 17904--17914 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3042] [3043] [3044] [3045] [3046] Underfull \hbox (badness 5036) in paragraph at lines 18228--18237 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059]) (./nnet-pkg.tex [3060] Chapter 26. [3061] Underfull \hbox (badness 10000) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [3062] [3063] [3064] [3065] [3066] [3067] [3068]) (./rpart-pkg.tex Chapter 27. [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094] [3095] [3096] [3097]) (./spatial-pkg.tex [3098] Chapter 28. [3099] [3100] [3101] [3102] [3103] [3104] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3105] [3106] [3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117]) (./survival-pkg.tex [3118] Chapter 29. [3119] [3120] [3121]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.267 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.267 ... Myelogenous Leukemia survival data}{aml} [3122] [3123] [3124] [3125] [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] [3129] [3130] [3131] [3132]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.957 ...herapy for Stage B/C colon cancer}{colon} [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] Underfull \hbox (badness 1389) in paragraph at lines 2172--2174 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] Underfull \hbox (badness 5274) in paragraph at lines 3401--3403 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3169] [3170] [3171] [3172] [3173] Underfull \hbox (badness 1540) in paragraph at lines 3749--3752 []\T1/ptm/m/n/10 an ar-ray con-tain-ing the ex-pected num-ber of events (or per -son years if [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] Underfull \hbox (badness 1281) in paragraph at lines 4299--4304 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] Underfull \hbox (badness 10000) in paragraph at lines 5170--5179 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3194] [3195] Underfull \hbox (badness 1038) in paragraph at lines 5322--5328 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3196] [3197] [3198] [3199] Underfull \hbox (badness 10000) in paragraph at lines 5591--5595 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3200] [3201] [3202] [3203] [3204] [3205] Underfull \hbox (badness 2150) in paragraph at lines 6063--6070 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] \T1/ptm/m/n/10 for sur-vival curves f rom Cox mod-els. 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It gives th e time range [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221]) [3222] (./fullrefman.ind [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2159--2161 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3243] [3244] [3245] [3246] [3247] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2691--2693 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] Overfull \hbox (20.8567pt too wide) in paragraph at lines 3730--3732 []\T1/zi4/m/it/10 [,CsparseMatrix,index,index,logical-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 3732--3734 []\T1/zi4/m/it/10 [,CsparseMatrix,index,missing,logical-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 3734--3736 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lines 4452--4454 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3262] Overfull \hbox (20.8567pt too wide) in paragraph at lines 4608--4610 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4610--4612 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4614--4616 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 4616--4618 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3263] Overfull \hbox (10.8567pt too wide) in paragraph at lines 4858--4860 []\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 4862--4864 []\T1/zi4/m/it/10 Arith,ddenseMatrix,ddenseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 4868--4870 []\T1/zi4/m/it/10 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coerce,ndenseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7502--7504 []\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7506--7508 []\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7508--7510 []\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7548--7550 []\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7572--7574 []\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7574--7576 []\T1/zi4/m/it/10 coerce,ngTMatrix,triangularMatrix-method [3281] Overfull \hbox (15.8567pt too wide) in paragraph at lines 7606--7608 []\T1/zi4/m/it/10 coerce,nsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7608--7610 []\T1/zi4/m/it/10 coerce,nsparseVector,dsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7610--7612 []\T1/zi4/m/it/10 coerce,nsparseVector,isparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7612--7614 []\T1/zi4/m/it/10 coerce,nsparseVector,lsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7614--7616 []\T1/zi4/m/it/10 coerce,nsparseVector,zsparseVector-method [3282] Overfull \hbox (15.8567pt too wide) in paragraph at lines 7732--7734 []\T1/zi4/m/it/10 coerce,RsparseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7734--7736 []\T1/zi4/m/it/10 coerce,RsparseMatrix,denseMatrix-method Underfull \vbox (badness 2564) has occurred while \output is active Overfull \hbox (15.8567pt too wide) in paragraph at lines 7740--7742 []\T1/zi4/m/it/10 coerce,RsparseMatrix,dsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7742--7744 []\T1/zi4/m/it/10 coerce,RsparseMatrix,generalMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7746--7748 []\T1/zi4/m/it/10 coerce,RsparseMatrix,lsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7752--7754 []\T1/zi4/m/it/10 coerce,RsparseMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7754--7756 []\T1/zi4/m/it/10 coerce,RsparseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7760--7762 []\T1/zi4/m/it/10 coerce,sparseMatrix,generalMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7770--7772 []\T1/zi4/m/it/10 coerce,sparseMatrix,RsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7772--7774 []\T1/zi4/m/it/10 coerce,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 7774--7776 []\T1/zi4/m/it/10 coerce,sparseMatrix,symmetricMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 7776--7778 []\T1/zi4/m/it/10 coerce,sparseMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7778--7780 []\T1/zi4/m/it/10 coerce,sparseVector,CsparseMatrix-method [3283] Overfull \hbox (5.8567pt too wide) in paragraph at lines 7788--7790 []\T1/zi4/m/it/10 coerce,sparseVector,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7790--7792 []\T1/zi4/m/it/10 coerce,sparseVector,TsparseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 7796--7798 []\T1/zi4/m/it/10 coerce,triangularMatrix,symmetricMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7798--7800 []\T1/zi4/m/it/10 coerce,TsparseMatrix,CsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7804--7806 []\T1/zi4/m/it/10 coerce,TsparseMatrix,lsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7810--7812 []\T1/zi4/m/it/10 coerce,TsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7812--7814 []\T1/zi4/m/it/10 coerce,TsparseMatrix,sparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7814--7816 []\T1/zi4/m/it/10 coerce,xsparseVector,dsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7816--7818 []\T1/zi4/m/it/10 coerce,xsparseVector,isparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7818--7820 []\T1/zi4/m/it/10 coerce,xsparseVector,lsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7820--7822 []\T1/zi4/m/it/10 coerce,xsparseVector,nsparseVector-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7822--7824 []\T1/zi4/m/it/10 coerce,xsparseVector,zsparseVector-method Underfull \vbox (badness 1484) has occurred while \output is active [3284] Overfull \hbox (20.8567pt too wide) in paragraph at lines 7951--7953 []\T1/zi4/m/it/10 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crossprod,CsparseMatrix,numLike-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 8490--8492 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8492--8494 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,dgCMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 8494--8496 []\T1/zi4/m/it/10 crossprod,ddenseMatrix,dsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8502--8504 []\T1/zi4/m/it/10 crossprod,dgeMatrix,dsparseMatrix-method [3287] Overfull \hbox (35.8567pt too wide) in paragraph at lines 8510--8512 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8512--8514 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,dgeMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 8514--8516 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8516--8518 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,lgeMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8518--8520 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8520--8522 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 8522--8524 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,sparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 8524--8526 []\T1/zi4/m/it/10 crossprod,dsparseMatrix,ddenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8526--8528 []\T1/zi4/m/it/10 crossprod,dsparseMatrix,dgeMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8528--8530 []\T1/zi4/m/it/10 crossprod,dtpMatrix,ddenseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8532--8534 []\T1/zi4/m/it/10 crossprod,dtrMatrix,ddenseMatrix-method Overfull \hbox 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at lines 8660--8662 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Underfull \vbox (badness 1484) has occurred while \output is active Overfull \hbox (15.01662pt too wide) in paragraph at lines 8717--8719 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 8722--8724 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3289] Overfull \hbox (5.8567pt too wide) in paragraph at lines 9048--9050 []\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9050--9052 []\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method [3290] Overfull \hbox (15.8567pt too wide) in paragraph at lines 9058--9060 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 9072--9074 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in paragraph at lines 16816--16818 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3327] [3328] [3329] [3330] Overfull \hbox (0.8567pt too wide) in paragraph at lines 17675--17677 []\T1/zi4/m/it/10 qr.fitted,sparseQR,ddenseMatrix-method [3331] [3332] Overfull \hbox (0.8567pt too wide) in paragraph at lines 18043--18045 []\T1/zi4/m/it/10 rbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 18045--18047 []\T1/zi4/m/it/10 rbind2,diagonalMatrix,sparseMatrix-method [3333] Overfull \hbox (0.8567pt too wide) in paragraph at lines 18077--18079 []\T1/zi4/m/it/10 rbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 18079--18081 []\T1/zi4/m/it/10 rbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 18085--18087 []\T1/zi4/m/it/10 rbind2,sparseMatrix,sparseMatrix-method Underfull \vbox (badness 1348) has occurred while \output is active [3334] [3335] [3336] Underfull \vbox (badness 1348) has occurred while \output is active [3337] [3338] [3339] Underfull \vbox (badness 1824) has occurred while \output is active [3340] Overfull \hbox (15.01662pt too wide) in paragraph at lines 19642--19644 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3341] Overfull \hbox (15.01662pt too wide) in paragraph at lines 19644--19646 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19647--19649 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19658--19660 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19663--19665 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 19671--19673 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Underfull \vbox (badness 2564) has occurred while \output is active [3342] Overfull \hbox (10.8567pt too wide) in paragraph at lines 19876--19878 []\T1/zi4/m/it/10 solve,MatrixFactorization,missing-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 19878--19880 []\T1/zi4/m/it/10 solve,MatrixFactorization,numeric-method [3343] Overfull \hbox (20.01662pt too wide) in paragraph at lines 20031--20033 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3344] [3345] Overfull \hbox (5.8567pt too wide) in paragraph at lines 20434--20436 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 20436--20438 []\T1/zi4/m/it/10 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Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex) [1{/usr/sh are/texlive/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] ) Output written on R-FAQ.pdf (49 pages, 363647 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux) (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex) [1{/usr/sh are/texlive/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] ) Output written on R-FAQ.pdf (51 pages, 379729 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux) (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex) [1{/usr/sh are/texlive/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] ) Output written on R-FAQ.pdf (51 pages, 379729 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] [-1] Chapter 1 [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] Underfull \hbox (badness 7685) in paragraph at lines 1121--1125 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [11] [12] Underfull \hbox (badness 10000) in paragraph at lines 1261--1265 []@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin 32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in Underfull \hbox (badness 10000) in paragraph at lines 1261--1265 @textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl l[] @textrm and in-stall it un-der @textttsl R_ [13] Underfull \hbox (badness 10000) in paragraph at lines 1348--1352 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [14] [15] Chapter 4 [16] [17] Chapter 5 [18] Chapter 6 [19] [20] [21] [22] Overfull \hbox (29.11234pt too wide) in paragraph at lines 2121--2131 []@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R .framework/Resources/etc/Makeconf[] [23] [24] [25] Chapter 7 [26] [27] [28] Chapter 8 [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35] [36] [37] [38] [39] [40] [41] Appendix B [42] [43] [44] [45] [46] Appendix C [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (45.05586pt too wide) in paragraph at lines 4762--4762 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [55] Overfull \hbox (22.06111pt too wide) in paragraph at lines 4913--4913 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con tents/Home[] [56] [57] [58] Underfull \hbox (badness 10000) in paragraph at lines 5131--5134 []@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe r per-for-mance: [59] [60] [61] [62] [63] Appendix D [64] [65] [66] (Function and variable index) [67] (Concept index) [68] (Environment variable index) [69] [70] ) (see the transcript file for additional information) Output written on R-admin.pdf (73 pages, 442857 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-admin.aux) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-admin.toc [-1] [-2]) [-3] (./R-admin.toc) (./R-admin.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] Underfull \hbox (badness 7685) in paragraph at lines 1121--1125 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [11] [12] Underfull \hbox (badness 10000) in paragraph at lines 1261--1265 []@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin 32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in Underfull \hbox (badness 10000) in paragraph at lines 1261--1265 @textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl l[] @textrm and in-stall it un-der @textttsl R_ [13] Underfull \hbox (badness 10000) in paragraph at lines 1348--1352 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [14] [15] Chapter 4 [16] [17] Chapter 5 [18] Chapter 6 [19] [20] [21] [22] Overfull \hbox (29.11234pt too wide) in paragraph at lines 2121--2131 []@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R .framework/Resources/etc/Makeconf[] [23] [24] [25] Chapter 7 [26] [27] [28] Chapter 8 [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35] [36] [37] [38] [39] [40] [41] Appendix B [42] [43] [44] [45] [46] Appendix C [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (45.05586pt too wide) in paragraph at lines 4762--4762 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [55] Overfull \hbox (22.06111pt too wide) in paragraph at lines 4913--4913 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con tents/Home[] [56] [57] [58] Underfull \hbox (badness 10000) in paragraph at lines 5131--5134 []@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe r per-for-mance: [59] [60] [61] [62] [63] Appendix D [64] [65] [66] (Function and variable index) [67] (./R-admin.vrs) (Concept index) [68] (./R-admin.cps) (Environment variable index) [69] (./R-admin.ens) [70] ) (see the transcript file for additional information) Output written on R-admin.pdf (75 pages, 490205 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-admin.aux) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-admin.toc [-1] [-2]) [-3] (./R-admin.toc) (./R-admin.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] Underfull \hbox (badness 7685) in paragraph at lines 1121--1125 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [11] [12] Underfull \hbox (badness 10000) in paragraph at lines 1261--1265 []@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin 32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in Underfull \hbox (badness 10000) in paragraph at lines 1261--1265 @textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl l[] @textrm and in-stall it un-der @textttsl R_ [13] Underfull \hbox (badness 10000) in paragraph at lines 1348--1352 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [14] [15] Chapter 4 [16] [17] Chapter 5 [18] Chapter 6 [19] [20] [21] [22] Overfull \hbox (29.11234pt too wide) in paragraph at lines 2121--2131 []@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R .framework/Resources/etc/Makeconf[] [23] [24] [25] Chapter 7 [26] [27] [28] Chapter 8 [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35] [36] [37] [38] [39] [40] [41] Appendix B [42] [43] [44] [45] [46] Appendix C [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (45.05586pt too wide) in paragraph at lines 4762--4762 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [55] Overfull \hbox (22.06111pt too wide) in paragraph at lines 4913--4913 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con tents/Home[] [56] [57] [58] Underfull \hbox (badness 10000) in paragraph at lines 5131--5134 []@textrm You can tar-get spe-cific Sparc ar-chi-tec-tures for (slightly) highe r per-for-mance: [59] [60] [61] [62] [63] Appendix D [64] [65] [66] (Function and variable index) [67] (./R-admin.vrs) (Concept index) [68] (./R-admin.cps) (Environment variable index) [69] (./R-admin.ens) [70] ) (see the transcript file for additional information) Output written on R-admin.pdf (75 pages, 490205 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] [-1] (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100 [][]@textbf RPostgreSQL[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107 [][]@textbf xlsReadWrite[][]| Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (Concept index) [29] [30] ) (see the transcript file for additional information) Output written on R-data.pdf (33 pages, 267569 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-data.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100 [][]@textbf RPostgreSQL[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107 [][]@textbf xlsReadWrite[][]| Chapter 1 [1] [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (./R-data.vrs [29]) (Concept index) [30] (./R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 307399 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-data.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100 [][]@textbf RPostgreSQL[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107 [][]@textbf xlsReadWrite[][]| Chapter 1 [1] [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (./R-data.vrs [29]) (Concept index) [30] (./R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 307392 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-data.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100 [][]@textbf RPostgreSQL[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107 [][]@textbf xlsReadWrite[][]| Chapter 1 [1] [2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (./R-data.vrs [29]) (Concept index) [30] (./R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 307392 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2069--2069 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2071--2071 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 2 [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 5752--5759 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 5929--5935 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [67] [68] [69] Chapter 3 [70] [71] [72] [73] [74] [75] [76] [77] Chapter 4 [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7180--7189 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [83] [84] [85] [86] Underfull \hbox (badness 7379) in paragraph at lines 7588--7591 []@textrm Some ver-sions have greatly in-creased com-pi-la-tion times on a few files (e.g. [87] Underfull \hbox (badness 10000) in paragraph at lines 7592--7594 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [88] Overfull \hbox (50.80455pt too wide) in paragraph at lines 7713--7713 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [89] [90] [91] [92] Chapter 5 [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] Overfull \hbox (16.31242pt too wide) in paragraph at lines 9020--9020 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [105] [106] [107] [108] [109] [110] [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9854--9856 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10865--10865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [126] Chapter 6 [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 12079--12083 @texttt <- order(x, y, na.last, decreasing)[] @textrm cor-re-sponds to @texttt R_orderVector(indx, n, [138] [139] [140] [141] [142] [143] Underfull \hbox (badness 10000) in paragraph at lines 12511--12517 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [144] [145] Chapter 8 [146] [147] [148] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12921--12921 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [149] Overfull \hbox (33.55849pt too wide) in paragraph at lines 12969--12969 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [150] [151] [152] [153] [154] [155] Underfull \hbox (badness 10000) in paragraph at lines 13477--13484 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [156] Underfull \hbox (badness 10000) in paragraph at lines 13600--13604 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [157] (Function and variable index) [158] (Concept index) [159] [160] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb > Output written on R-exts.pdf (163 pages, 810148 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-exts.toc [-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2069--2069 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2071--2071 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 2 [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 5752--5759 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 5929--5935 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [67] [68] [69] Chapter 3 [70] [71] [72] [73] [74] [75] [76] [77] Chapter 4 [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7180--7189 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [83] [84] [85] [86] Underfull \hbox (badness 7379) in paragraph at lines 7588--7591 []@textrm Some ver-sions have greatly in-creased com-pi-la-tion times on a few files (e.g. [87] Underfull \hbox (badness 10000) in paragraph at lines 7592--7594 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [88] Overfull \hbox (50.80455pt too wide) in paragraph at lines 7713--7713 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [89] [90] [91] [92] Chapter 5 [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] Overfull \hbox (16.31242pt too wide) in paragraph at lines 9020--9020 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [105] [106] [107] [108] [109] [110] [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9854--9856 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10865--10865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [126] Chapter 6 [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 12079--12083 @texttt <- order(x, y, na.last, decreasing)[] @textrm cor-re-sponds to @texttt R_orderVector(indx, n, [138] [139] [140] [141] [142] [143] Underfull \hbox (badness 10000) in paragraph at lines 12511--12517 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [144] [145] Chapter 8 [146] [147] [148] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12921--12921 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [149] Overfull \hbox (33.55849pt too wide) in paragraph at lines 12969--12969 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [150] [151] [152] [153] [154] [155] Underfull \hbox (badness 10000) in paragraph at lines 13477--13484 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [156] Underfull \hbox (badness 10000) in paragraph at lines 13600--13604 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [157] (Function and variable index) [158] (./R-exts.vrs [159] [160]) (Concept index) [161] (./R-exts.cps [162]) [163] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb> Output written on R-exts.pdf (169 pages, 871978 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-exts.toc [-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2069--2069 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2071--2071 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 2 [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 5752--5759 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 5929--5935 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [67] [68] [69] Chapter 3 [70] [71] [72] [73] [74] [75] [76] [77] Chapter 4 [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7180--7189 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [83] [84] [85] [86] Underfull \hbox (badness 7379) in paragraph at lines 7588--7591 []@textrm Some ver-sions have greatly in-creased com-pi-la-tion times on a few files (e.g. [87] Underfull \hbox (badness 10000) in paragraph at lines 7592--7594 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [88] Overfull \hbox (50.80455pt too wide) in paragraph at lines 7713--7713 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [89] [90] [91] [92] Chapter 5 [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] Overfull \hbox (16.31242pt too wide) in paragraph at lines 9020--9020 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [105] [106] [107] [108] [109] [110] [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9854--9856 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10865--10865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [126] Chapter 6 [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 12079--12083 @texttt <- order(x, y, na.last, decreasing)[] @textrm cor-re-sponds to @texttt R_orderVector(indx, n, [138] [139] [140] [141] [142] [143] Underfull \hbox (badness 10000) in paragraph at lines 12511--12517 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [144] [145] Chapter 8 [146] [147] [148] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12921--12921 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [149] Overfull \hbox (33.55849pt too wide) in paragraph at lines 12969--12969 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [150] [151] [152] [153] [154] [155] Underfull \hbox (badness 10000) in paragraph at lines 13477--13484 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [156] Underfull \hbox (badness 10000) in paragraph at lines 13600--13604 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [157] (Function and variable index) [158] (./R-exts.vrs [159] [160]) (Concept index) [161] (./R-exts.cps [162]) [163] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb> Output written on R-exts.pdf (169 pages, 871989 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] <./i mages/hist.pdf> [34] <./images/ecdf.pdf> <./images/QQ.pdf> [35] [36] <./images/ ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] <./image s/fig11.pdf> [71] <./images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] Appendix E [94] Appendix F [95] [96] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb> Output written on R-intro.pdf (99 pages, 585479 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-intro.aux) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] <./images/hist.pdf> [34] <./images/ecdf.pdf> <./images /QQ.pdf> [35] [36] <./images/ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] <./images/fig11.pdf> [71] <./images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (./R-intro.vrs [94] [95]) Appendix E [96] (./R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc} Output written on R-intro.pdf (105 pages, 636306 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-intro.aux) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] <./images/hist.pdf> [34] <./images/ecdf.pdf> <./images /QQ.pdf> [35] [36] <./images/ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] <./images/fig11.pdf> [71] <./images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (./R-intro.vrs [94] [95]) Appendix E [96] (./R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc} Output written on R-intro.pdf (105 pages, 636301 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] [-1] Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 2 [21] [22] [23] [24] [25] Chapter 3 [26] [27] Chapter 4 [28] [29] Chapter 5 [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Chapter 7 [42] [43] Chapter 8 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 3848--3853 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [46] [47] [48] [49] Chapter 9 [50] [51] Chapter 10 [52] Chapter 11 [53] Chapter 12 [54] [55] (Function and variable index) [56] (Concept index) [57] [58] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc} Output written on R-ints.pdf (61 pages, 384853 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-ints.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-ints.toc [-1]) [-2] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 2 [21] [22] [23] [24] [25] Chapter 3 [26] [27] Chapter 4 [28] [29] Chapter 5 [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Chapter 7 [42] [43] Chapter 8 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 3848--3853 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [46] [47] [48] [49] Chapter 9 [50] [51] Chapter 10 [52] Chapter 11 [53] Chapter 12 [54] [55] (Function and variable index) [56] (./R-ints.vrs [57]) (Concept index) [58] (./R-ints.cps) [59] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc} Output written on R-ints.pdf (63 pages, 432816 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-ints.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-ints.toc [-1]) [-2] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 2 [21] [22] [23] [24] [25] Chapter 3 [26] [27] Chapter 4 [28] [29] Chapter 5 [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Chapter 7 [42] [43] Chapter 8 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 3848--3853 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [46] [47] [48] [49] Chapter 9 [50] [51] Chapter 10 [52] Chapter 11 [53] Chapter 12 [54] [55] (Function and variable index) [56] (./R-ints.vrs [57]) (Concept index) [58] (./R-ints.cps) [59] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc} Output written on R-ints.pdf (63 pages, 432817 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] [-1] Chapter 1 Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4343--4345 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (Concept Index) [52] Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 327122 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-lang.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4343--4345 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (./R-lang.vrs [52]) (Concept Index) [53] (./R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 376149 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-lang.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4343--4345 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (./R-lang.vrs [52]) (Concept Index) [53] (./R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 376146 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc' + cp doc/manual/R-exts.texi doc/manual/R-exts.texi.spot + cp doc/manual/R-intro.texi doc/manual/R-intro.texi.spot + sed -i 's|@eqn|@math|g' doc/manual/R-exts.texi + sed -i 's|@eqn|@math|g' doc/manual/R-intro.texi + make info make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/manual' /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. 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R-lang.texi make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc' + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ + mv doc/FAQ.utf8 doc/FAQ + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.SQy1l2 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 ++ dirname /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 + cd R-3.1.2 + make DESTDIR=/builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 install install-info mkdir -p -- /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/m4' make[1]: Nothing to be done 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'/builddir/build/BUILD/R-3.1.2/src/appl' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/nmath' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/unix' gcc -m32 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m32 -march=i686 -mtune=atom -fasynchronous-unwind-tables -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/pkgconfig make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/unix' make[2]: Entering directory 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make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/vfonts' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/library' mkdir -p -- /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/manual' mkdir -p -- /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/info /usr/bin/install -c -m 644 "./dir" "/builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/info" installing R info pages ... updating '/usr/share/info/dir' ... make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/manual' + mv doc/manual/R-exts.texi.spot doc/manual/R-exts.texi + mv doc/manual/R-intro.texi.spot doc/manual/R-intro.texi + make DESTDIR=/builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 install-pdf make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-exts.toc [-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2069--2069 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2071--2071 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 2 [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] Underfull \hbox (badness 10000) in paragraph at lines 5752--5759 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 5929--5935 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [67] [68] [69] Chapter 3 [70] [71] [72] [73] [74] [75] [76] [77] Chapter 4 [78] [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7180--7189 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [83] [84] [85] [86] Underfull \hbox (badness 7379) in paragraph at lines 7588--7591 []@textrm Some ver-sions have greatly in-creased com-pi-la-tion times on a few files (e.g. [87] Underfull \hbox (badness 10000) in paragraph at lines 7592--7594 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [88] Overfull \hbox (50.80455pt too wide) in paragraph at lines 7713--7713 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [89] [90] [91] [92] Chapter 5 [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] Overfull \hbox (16.31242pt too wide) in paragraph at lines 9020--9020 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [105] [106] [107] [108] [109] [110] [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9854--9856 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10865--10865 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [126] Chapter 6 [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 12079--12083 @texttt <- order(x, y, na.last, decreasing)[] @textrm cor-re-sponds to @texttt R_orderVector(indx, n, [138] [139] [140] [141] [142] [143] Underfull \hbox (badness 10000) in paragraph at lines 12511--12517 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [144] [145] Chapter 8 [146] [147] [148] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12921--12921 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [149] Overfull \hbox (33.55849pt too wide) in paragraph at lines 12969--12969 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [150] [151] [152] [153] [154] [155] Underfull \hbox (badness 10000) in paragraph at lines 13477--13484 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [156] Underfull \hbox (badness 10000) in paragraph at lines 13600--13604 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [157] (Function and variable index) [158] (./R-exts.vrs [159] [160]) (Concept index) [161] (./R-exts.cps [162]) [163] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb> Output written on R-exts.pdf (169 pages, 871989 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/texinfo.tex Loading texinfo [version 2013-09-11.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-intro.aux) (./R-defs.texi (/usr/share/texlive/texmf-local/texmf-compat/tex/texinfo/txi-en.tex)) (./version.texi) [1{/usr/share/texlive/texmf-dist/fonts/map/pdftex/updmap/pdfte x.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] <./images/hist.pdf> [34] <./images/ecdf.pdf> <./images /QQ.pdf> [35] [36] <./images/ice.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] <./images/fig11.pdf> [71] <./images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (./R-intro.vrs [94] [95]) Appendix E [96] (./R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/cm-super/cm-super-t1.enc} Output written on R-intro.pdf (105 pages, 636301 bytes). Transcript written on R-intro.log. installing R manuals in PDF format ... make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/doc/manual' + rm -f /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/info/dir + rm -f /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/info/dir.old + mkdir -p /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/doc/R + install -p CAPABILITIES /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/doc/R + cd src/nmath/standalone + make install DESTDIR=/builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/src/include' + mkdir -p /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/etc/ld.so.conf.d + echo /usr/lib/R/lib + mkdir -p /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/R/library + mkdir -p /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/rpm/macros.d/ + install -m0644 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'$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/beav1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/beav2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/biopsy.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/birthwt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/boxcox.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/cabbages.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/caith.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/cats.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/cement.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/chem.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/con2tr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/confint.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/contr.sdif.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/coop.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/corresp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/cov.rob.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/cov.trob.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/cpus.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/crabs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/deaths.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/denumerate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/dose.p.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/drivers.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/dropterm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/eagles.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/epil.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/eqscplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/farms.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/fgl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/fitdistr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/forbes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/fractions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/galaxies.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/gamma.dispersion.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/gamma.shape.glm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/gehan.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/genotype.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/geyser.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/gilgais.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/ginv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/glm.convert.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/glm.nb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/glmmPQL.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/hills.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/hist.scott.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/housing.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/huber.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/hubers.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/immer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/isoMDS.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/kde2d.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/lda.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/ldahist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/leuk.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/lm.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/lm.ridge.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/loglm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/loglm1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/logtrans.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/lqs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/mammals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/mca.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/mcycle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/menarche.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/michelson.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/minn38.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/motors.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/muscle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/mvrnorm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/negative.binomial.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/newcomb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/nlschools.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/npk.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/npr1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/oats.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/painters.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/pairs.lda.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/parcoord.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/petrol.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/phones.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/plot.lda.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/plot.mca.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/plot.profile.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/polr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/predict.glmmPQL.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/predict.lda.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/predict.lqs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/predict.mca.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/predict.qda.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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/builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/rlm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/rms.curv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/rnegbin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/road.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/rotifer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/sammon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/ships.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/shoes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/shrimp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/shuttle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/snails.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/stdres.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/steam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/stepAIC.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/stormer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/studres.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/summary.loglm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/summary.negbin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/summary.rlm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/survey.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/synth.tr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/theta.md.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/topo.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/truehist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/ucv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/waders.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/whiteside.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/width.SJ.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/write.matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/MASS/html/wtloss.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/BunchKaufman-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/CAex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/CHMfactor-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/Cholesky-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/Cholesky.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/CsparseMatrix-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/Diagonal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/Hilbert.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/KNex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/KhatriRao.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/LU-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/Matrix-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/Matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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'$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/ntrMatrix-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/number-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/pMatrix-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/printSpMatrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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'$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/sparseLU-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/sparseMatrix-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/sparseMatrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/sparseQR-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/unpack.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/unused-classes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/Matrix/html/updown.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Arithmetic.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/AsIs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Bessel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/CallExternal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Colon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Comparison.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Constants.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Cstack_info.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/DateTimeClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Dates.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Deprecated.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Encoding.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/EnvVar.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Extract.data.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Extract.factor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Extract.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Extremes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Foreign-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Quotes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Random-user.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Random.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/RdUtils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Recall.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Reserved.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Rhome.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Round.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Signals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Special.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Startup.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Syntax.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.getenv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.getpid.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.glob.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.info.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.localeconv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.readlink.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.setFileTime.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.setenv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.sleep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.time.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Sys.which.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Trig.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/UseMethod.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Vectorize.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/Version.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/abbreviate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/agrep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/all.equal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/all.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/allnames.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/any.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/aperm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/append.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/apply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/args.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/array.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/as.Date.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/as.POSIXlt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/as.data.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/as.environment.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/as.function.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/assign.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/assignOps.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/attach.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/attr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/attributes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/autoload.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/backsolve.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/base-defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/base-deprecated.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/base-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/base-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/cumsum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/cut.POSIXt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/cut.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/data.class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/data.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/data.matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dataframeHelpers.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/date.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dcf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/debug.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/delayedAssign.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/deparse.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/deparseOpts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/det.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/detach.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dev.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/diag.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/diff.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/difftime.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dim.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dimnames.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/do.call.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dontCheck.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/double.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dput.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/drop.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/droplevels.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dump.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/duplicated.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/dynload.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/eapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/eigen.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/encodeString.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/environment.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/eval.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/exists.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/expand.grid.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/expression.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/factor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/file.access.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/file.choose.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/file.info.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/file.path.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/file.show.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/files.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/files2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/find.package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/findInterval.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/force.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/formals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/format.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/format.info.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/format.pval.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/formatDL.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/formatc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/function.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/funprog.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/gc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/gc.time.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/gctorture.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/get.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/getCallingDLL.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/getDLLRegisteredRoutines.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/getLoadedDLLs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/getNativeSymbolInfo.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/gettext.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/getwd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/gl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/grep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/grepRaw.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/groupGeneric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/gzcon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/hexmode.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/iconv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/icuSetCollate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/identical.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/identity.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ifelse.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/integer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/interaction.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/interactive.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/invisible.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/is.finite.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/is.function.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/is.language.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/is.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/is.recursive.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/is.single.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/is.unsorted.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/isR.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/isS4.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/isSymmetric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/jitter.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/kappa.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/kronecker.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/l10n_info.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/labels.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/lapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/lazyload.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/length.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/levels.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/libPaths.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/library.dynam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/library.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/license.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/list.files.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/list.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/list2env.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/load.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/locales.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/logical.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/lower.tri.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/make.names.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/make.unique.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/mapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/margin.table.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/mat.or.vec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/match.arg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/match.call.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/match.fun.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/match.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/matmult.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/maxCol.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/mean.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/memCompress.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/memory.profile.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/merge.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/message.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/missing.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/mode.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/name.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/names.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/nargs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/nchar.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/nlevels.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/noquote.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/norm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/normalizePath.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/notyet.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/nrow.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ns-dblcolon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ns-hooks.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ns-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ns-load.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ns-reflect.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/ns-topenv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/numeric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/numeric_version.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/octmode.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/on.exit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/options.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/order.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/outer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/parse.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/paste.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/path.expand.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/pmatch.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/polyroot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/pos.to.env.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/pretty.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/print.dataframe.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/print.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/print.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/prmatrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/proc.time.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/prod.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/prop.table.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/pushBack.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/qr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/qraux.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/quit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/range.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rank.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/raw.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rawConnection.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rawConversion.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/readBin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/readChar.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/readLines.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/readRDS.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/readRenviron.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/readline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/reg.finalizer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/regex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/regmatches.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/replace.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rev.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/round.POSIXt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/row.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/row.names.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/rowsum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sQuote.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sample.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/save.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/scale.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/scan.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/search.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/seek.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/seq.Date.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/seq.POSIXt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/seq.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sequence.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/serialize.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/setTimeLimit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sets.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/shQuote.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/showConnections.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sign.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sink.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/slice.index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/slotOp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/socketSelect.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/solve.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sort.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/source.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/split.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sprintf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/srcfile.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/standardGeneric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/stop.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/stopifnot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/strptime.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/strsplit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/strtoi.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/strtrim.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/structure.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/strwrap.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/subset.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/substitute.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/substr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/summary.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/svd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sweep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/switch.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sys.parent.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/sys.source.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/system.file.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/system.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/system.time.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/system2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/t.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/table.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/tabulate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/tapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/taskCallback.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/taskCallbackManager.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/taskCallbackNames.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/tempfile.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/textconnections.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/tilde.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/timezones.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/toString.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/trace.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/traceback.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/tracemem.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/transform.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/try.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/typeof.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/unique.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/unlink.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/unlist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/unname.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/userhooks.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/utf8Conversion.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/vector.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/warning.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/base/html/warnings.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/melanoma.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/motor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/neuro.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/nitrofen.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/nodal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/norm.ci.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/nuclear.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/paulsen.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/plot.boot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/poisons.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/polar.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/print.boot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/print.bootci.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/print.saddle.distn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/print.simplex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/remission.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/saddle.distn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/saddle.distn.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/saddle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/salinity.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/simplex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/simplex.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/smooth.f.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/sunspot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/survival.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/tau.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/tilt.boot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/tsboot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/tuna.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/urine.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/var.linear.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/boot/html/wool.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/SOM.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/batchSOM.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/condense.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/knn.cv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/knn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/knn1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/lvq1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/lvq2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/lvq3.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/lvqinit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/lvqtest.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/multiedit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/olvq1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/reduce.nn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/class/html/somgrid.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/agnes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/agnes.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/agriculture.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/animals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/bannerplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/chorSub.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/clara.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/clara.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/clusGap.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/clusplot.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/clusplot.partition.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/cluster-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/coef.hclust.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/daisy.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/diana.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/dissimilarity.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/ellipsoidhull.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/fanny.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/fanny.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/flower.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/lower.to.upper.tri.inds.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/mona.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/mona.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/pam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/pam.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/partition.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/plantTraits.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/plot.agnes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/plot.diana.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/plot.mona.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/plot.partition.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/pltree.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/pltree.twins.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/print.dissimilarity.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/print.fanny.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/print.mona.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/print.pam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/ruspini.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/silhouette.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/sizeDiss.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/summary.agnes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/summary.clara.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/votes.repub.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/cluster/html/xclara.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/codetools/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/codetools/html/checkUsage.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/codetools/html/codetools.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/codetools/html/findGlobals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/codetools/html/showTree.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/compiler/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/compiler/html/compile.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/DNase.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/EuStockMarkets.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/Formaldehyde.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/HairEyeColor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/Harman23.cor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/Harman74.cor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/Indometh.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/InsectSprays.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/JohnsonJohnson.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/OrchardSprays.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/PlantGrowth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/Puromycin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/Theoph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/Titanic.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/ToothGrowth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/UCBAdmissions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/UKDriverDeaths.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/UKLungDeaths.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/VADeaths.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/WWWusage.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/WorldPhones.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/ability.cov.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/airmiles.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/airquality.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/anscombe.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/attenu.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/attitude.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/austres.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/beavers.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/cars.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/chickwts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/co2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/crimtab.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/datasets-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/discoveries.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/esoph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/euro.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/eurodist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/faithful.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/freeny.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/infert.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/iris.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/islands.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/lh.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/longley.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/lynx.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/morley.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/mtcars.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/nhtemp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/nottem.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/npk.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/occupationalStatus.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/precip.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/presidents.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/pressure.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/quakes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/randu.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/rivers.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/rock.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/sleep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/stackloss.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/state.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/sunspot.month.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/sunspot.year.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/sunspots.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/swiss.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/treering.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/trees.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/uspop.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/volcano.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/warpbreaks.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/women.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/datasets/html/zCO2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/lookup.xport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.S.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.arff.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.dbf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.dta.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.epiinfo.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.mtp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.octave.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.spss.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.ssd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.systat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/read.xport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/write.arff.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/write.dbf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/write.dta.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/html/write.foreign.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/Devices.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/Hershey.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/Japanese.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/Type1Font.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/adjustcolor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/as.graphicsAnnot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/as.raster.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/axisTicks.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/boxplot.stats.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/cairo.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/check.options.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/chull.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/convertColor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/densCols.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/dev.capabilities.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/dev.capture.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/dev.flush.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/dev.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/dev.interactive.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/dev.size.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/dev2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/grDevices-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/gray.colors.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/gray.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/hcl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/hsv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/make.rgb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/n2mfrow.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/nclass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/palette.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/png.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/postscript.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/postscriptFonts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/pretty.Date.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/ps.options.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/quartz.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/quartzFonts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/recordGraphics.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/recordplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/rgb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/rgb2hsv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/savePlot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/trans3d.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/x11.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/x11Fonts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/xfig.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/xy.coords.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/xyTable.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grDevices/html/xyz.coords.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/abline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/arrows.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/assocplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/axTicks.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/axis.POSIXct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/axis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/barplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/box.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/boxplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/boxplot.matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/bxp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/cdplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/clip.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/contour.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/convertXY.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/coplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/curve.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/dotchart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/filled.contour.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/fourfoldplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/graphics-defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/graphics-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/grid.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/hist.POSIXt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/hist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/identify.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/image.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/layout.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/legend.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/lines.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/locator.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/matplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/mosaicplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/mtext.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/pairs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/panel.smooth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/par.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/persp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/pie.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.dataframe.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.design.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.factor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.formula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.table.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.window.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plot.xy.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/plothistogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/points.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/polygon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/polypath.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/rasterImage.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/rect.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/rug.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/screen.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/segments.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/smoothScatter.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/spineplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/stars.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/stem.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/stripchart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/strwidth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/sunflowerplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/symbols.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/text.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/title.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/units.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/xspline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/html/zAxis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/Grid.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/absolute.size.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/arrow.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/calcStringMetric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/current.viewport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/dataViewport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/depth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/drawDetails.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/editDetails.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/explode.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/gEdit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/gPath.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/getNames.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/gpar.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid-defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.DLapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.add.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.bezier.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.cap.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.circle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.clip.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.convert.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.copy.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.curve.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.delay.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.display.list.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.draw.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.edit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.force.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.function.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.get.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.grab.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.grep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.grill.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.grob.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.layout.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.lines.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.locator.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.ls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.move.to.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.newpage.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.null.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.pack.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.path.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.place.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.plot.and.legend.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.points.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.polygon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.pretty.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.raster.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.record.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.rect.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.refresh.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.remove.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.reorder.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.roundrect.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.segments.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.set.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.show.layout.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.show.viewport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.text.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.xaxis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.xspline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grid.yaxis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grobName.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grobWidth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/grobX.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/legendGrob.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/makeContent.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/plotViewport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/resolveRasterSize.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/showGrob.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/showViewport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/stringWidth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/unit.c.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/unit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/unit.length.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/unit.pmin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/unit.rep.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/valid.just.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/validDetails.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/viewport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/viewports.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/vpPath.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/widthDetails.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/xDetails.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/grid/html/xsplinePoints.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/Lattice.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/Rows.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/axis.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/banking.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/barchart.table.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/barley.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/cloud.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/draw.colorkey.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/draw.key.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/environmental.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/ethanol.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/histogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/interaction.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/lattice.options.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/latticeParseFormula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/level.colors.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/levelplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/llines.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/lset.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/make.groups.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/melanoma.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/oneway.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/packet.panel.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.axis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.barchart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.bwplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.cloud.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.densityplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.dotplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.functions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.histogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.levelplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.loess.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.number.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.pairs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.parallel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.qqmath.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.qqmathline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.smoothScatter.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.spline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.stripplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.superpose.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.violin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/panel.xyplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/prepanel.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/prepanel.functions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/print.trellis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/qq.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/qqmath.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/rfs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/shingles.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/simpleKey.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/simpleTheme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/singer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/splom.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/strip.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/tmd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/trellis.device.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/trellis.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/trellis.par.get.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/update.trellis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/utilities.3d.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/xyplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/lattice/html/xyplot.ts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/BasicClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/Classes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/Documentation.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/EmptyMethodsList-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/EnvironmentClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/GenericFunctions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/LanguageClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/LinearMethodsList-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/MethodDefinition-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/MethodSupport.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/MethodWithNext-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/Methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/MethodsList-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/MethodsList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/NextMethod.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/ObjectsWithPackage-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/RClassUtils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/RMethodUtils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/S3Part.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/S4groupGeneric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/SClassExtension-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/StructureClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/TraceClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/as.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/callGeneric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/canCoerce.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/cbind2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/className.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/classRepresentation-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/classesToAM.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/dotsMethods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/evalSource.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/findClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/findMethods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/fixPrevious.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/genericFunction-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/getClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/getMethod.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/getPackageName.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/hasArg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/implicitGeneric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/inheritedSlotNames.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/initialize-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/is.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/isSealedMethod.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/languageEl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/localRefClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/method.skeleton.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/methodUtilities.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/methods-defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/methods-deprecated.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/methods-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/new.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/nonStructure-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/promptClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/promptMethods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/refClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/representation.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/selectSuperClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/setClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/setClassUnion.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/setGeneric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/setLoadActions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/setMethod.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/setOldClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/setSClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/show.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/showMethods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/signature-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/slot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/stdRefClass.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/substituteDirect.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/testInheritedMethods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/validObject.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/html/zBasicFunsList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/Beta.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/Predict.matrix.cr.smooth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/Predict.matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/Predict.matrix.soap.film.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/Rrank.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/Tweedie.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/anova.gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/bam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/bam.update.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/cSplineDes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/choose.k.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/columb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/concurvity.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/exclude.too.far.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/extract.lme.cov.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/family.mgcv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/fix.family.link.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/fixDependence.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/formXtViX.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/formula.gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/fs.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/full.score.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.check.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.convergence.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.fit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.fit3.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.models.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.outer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.scale.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.selection.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.side.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam.vcomp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gam2objective.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gamObject.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gamSim.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gamm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/gaulss.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/get.var.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/in.out.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/inSide.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/influence.gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/initial.sp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/interpret.gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/ldTweedie.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/linear.functional.terms.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/logLik.gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/ls.size.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/magic.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/magic.post.proc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/mgcv-FAQ.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/mgcv-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/mgcv-parallel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/model.matrix.gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/mono.con.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/mroot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/mvn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/negbin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/new.name.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/notExp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/notExp2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/null.space.dimension.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/ocat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/pcls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/pdIdnot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/pdTens.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/pen.edf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/place.knots.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/plot.gam.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/polys.plot.html + for i in 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'$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/slanczos.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/mgcv/html/smooth.construct.ds.smooth.spec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Dim.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Earthquake.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Extract.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Fatigue.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Gasoline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Glucose.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Glucose2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Gun.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/IGF.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Initialize.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Initialize.glsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Initialize.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Initialize.lmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Initialize.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Initialize.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/LDEsysMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Machines.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/MathAchSchool.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/MathAchieve.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Matrix.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Matrix.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Meat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Milk.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Muscle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Names.formula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Names.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Names.pdBlocked.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Names.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Names.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Nitrendipene.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Oats.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Orthodont.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Ovary.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Oxboys.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Oxide.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/PBG.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Phenobarb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Pixel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Quinidine.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Rail.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/RatPupWeight.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Relaxin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Remifentanil.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Soybean.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Spruce.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Tetracycline1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Tetracycline2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/VarCorr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.corExp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.corGaus.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.corLin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.corRatio.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.corSpatial.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.corSpher.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.default.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Variogram.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Wafer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Wheat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/Wheat2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/allCoef.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/anova.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/anova.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/as.matrix.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/as.matrix.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/as.matrix.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/asOneFormula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/asTable.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/augPred.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/balancedGrouped.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/bdf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.gnls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.modelStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/coef.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/collapse.groupedData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/collapse.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/compareFits.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/comparePred.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corAR1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corARMA.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corCAR1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corCompSymm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corExp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corFactor.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corFactor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corGaus.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corLin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corMatrix.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corMatrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corMatrix.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corMatrix.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corNatural.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corRatio.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corSpatial.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corSpher.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/corSymm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/ergoStool.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fdHess.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fitted.glsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fitted.gnlsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fitted.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fitted.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fitted.lmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fitted.nlmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fixed.effects.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/fixef.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/formula.pdBlocked.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/formula.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/formula.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getCovariate.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getCovariate.data.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getCovariate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getCovariate.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getCovariateFormula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getData.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getData.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getData.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroups.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroups.data.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroups.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroups.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroups.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroups.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroups.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getGroupsFormula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getResponse.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getResponseFormula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/getVarCov.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gls-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/glsControl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/glsObject.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/glsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gnls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gnlsControl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gnlsObject.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gnlsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/groupedData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/gsummary.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/intervals.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/intervals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/intervals.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/intervals.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/isBalanced.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/isInitialized.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lmList.groupedData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lme.groupedData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lme.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lmeControl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lmeObject.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/lmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logDet.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logDet.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logDet.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logDet.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.glsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.gnls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.gnlsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.lmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/logLik.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/model.matrix.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/needUpdate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/needUpdate.modelStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/nlme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/nlme.nlsList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/nlmeControl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/nlmeObject.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/nlmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/nlsList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/nlsList.selfStart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pairs.compareFits.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pairs.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pairs.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdBlocked.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdCompSymm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdConstruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdConstruct.pdBlocked.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdDiag.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdFactor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdFactor.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdIdent.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdLogChol.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdMatrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdMatrix.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdNatural.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pdSymm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/phenoModel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.ACF.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.Variogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.augPred.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.compareFits.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.intervals.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.nffGroupedData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.nfnGroupedData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.nmGroupedData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.ranef.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/plot.ranef.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/pooledSD.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/predict.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/predict.gnls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/predict.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/predict.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/predict.nlme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/print.summary.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/print.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/qqnorm.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/qqnorm.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/quinModel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/random.effects.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/ranef.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/ranef.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/recalc.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/recalc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/recalc.modelStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/recalc.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/recalc.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/residuals.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/residuals.glsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/residuals.gnlsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/residuals.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/residuals.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/residuals.lmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/residuals.nlmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/simulate.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/solve.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/solve.reStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/splitFormula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.corStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.lmList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.lme.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.modelStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.nlsList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.pdMat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/summary.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/update.modelStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/update.varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varComb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varConstPower.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varExp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varFixed.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varFunc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varIdent.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varPower.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varWeights.glsStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varWeights.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/html/varWeights.lmeStruct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nnet/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nnet/html/class.ind.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nnet/html/multinom.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nnet/html/nnet.Hess.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nnet/html/nnet.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nnet/html/predict.nnet.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nnet/html/which.is.max.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/RngStream.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/children.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/clusterApply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/detectCores.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/makeCluster.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/mcaffinity.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/mcfork.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/mclapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/mcparallel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/parallel-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/pvec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/html/splitIndices.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/car.test.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/car90.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/cu.summary.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/kyphosis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/labels.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/meanvar.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/na.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/path.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/plot.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/plotcp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/post.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/predict.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/print.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/printcp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/prune.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/residuals.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/rpart-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/rpart.control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/rpart.exp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/rpart.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/rsq.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/snip.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/solder.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/stagec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/summary.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/text.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/rpart/html/xpred.rpart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/Kaver.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/Kenvl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/Kfn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/Psim.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/SSI.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/Strauss.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/anova.trls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/correlogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/expcov.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/ppgetregion.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/ppinit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/pplik.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/ppregion.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/predict.trls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/prmat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/semat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/surf.gls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/surf.ls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/trls.influence.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/trmat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/spatial/html/variogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/asVector.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/backSpline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/bs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/interpSpline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/ns.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/periodicSpline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/polySpline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/predict.bSpline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/predict.bs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/splineDesign.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/splineKnots.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/splineOrder.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/splines-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/splines/html/xyVector.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/AIC.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ARMAacf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ARMAtoMA.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Beta.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Binomial.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Cauchy.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Chisquare.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Distributions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Exponential.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Fdist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/GammaDist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Geometric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/HoltWinters.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Hypergeometric.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/IQR.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/KalmanLike.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Logistic.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Lognormal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Multinom.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/NLSstAsymptotic.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/NLSstClosestX.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/NLSstLfAsymptote.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/NLSstRtAsymptote.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/NegBinomial.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Normal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Poisson.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSD.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSasymp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSasympOff.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSasympOrig.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSbiexp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSfol.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSfpl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSgompertz.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSlogis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSmicmen.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SSweibull.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/SignRank.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/StructTS.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/TDist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Tukey.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/TukeyHSD.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Uniform.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Weibull.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/Wilcoxon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/acf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/acf2AR.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/add1.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/addmargins.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/aggregate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/alias.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/anova.glm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/anova.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/anova.lm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/anova.mlm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ansari.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/aov.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/approxfun.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ar.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ar.ols.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/arima.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/arima.sim.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/arima0.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/as.hclust.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/asOneSidedFormula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ave.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/bandwidth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/bartlett.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/binom.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/biplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/biplot.princomp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/birthday.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/box.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cancor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/case.names.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/checkMFClasses.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/chisq.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cmdscale.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/coef.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/complete.cases.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/confint.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/constrOptim.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/contrast.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/contrasts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/convolve.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cophenetic.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cor.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cov.wt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cpgram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/cutree.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/decompose.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/delete.response.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/dendrapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/dendrogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/density.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/deriv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/deviance.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/df.residual.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/diffinv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/dist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/dummy.coef.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ecdf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/eff.aovlist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/effects.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/embed.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/expand.model.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/extractAIC.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/factanal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/factor.scope.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/family.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/fft.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/filter.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/fisher.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/fitted.values.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/fivenum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/fligner.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/formula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/formula.nls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/friedman.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ftable.formula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ftable.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/getInitial.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/glm.control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/glm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/glm.summaries.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/hclust.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/heatmap.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/identify.hclust.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/influence.measures.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/integrate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/interaction.plot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/is.empty.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/isoreg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/kernapply.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/kernel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/kmeans.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/kruskal.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ks.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ksmooth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lag.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lag.plot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/line.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/listof.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lm.influence.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lm.summaries.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lmfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/loadings.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/loess.control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/loess.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/logLik.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/loglin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lowess.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ls.diag.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ls.print.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/lsfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/mad.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/mahalanobis.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/make.link.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/makepredictcall.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/manova.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/mantelhaen.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/mauchly.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/mcnemar.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/median.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/medpolish.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/model.extract.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/model.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/model.matrix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/model.tables.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/monthplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/mood.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/na.action.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/na.contiguous.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/na.fail.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/nafns.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/naprint.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/nextn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/nlm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/nlminb.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/nls.control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/nls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/nobs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/numericDeriv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/offset.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/oneway.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/optim.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/optimize.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/order.dendrogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/p.adjust.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/pairwise.prop.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/pairwise.t.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/pairwise.table.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/pairwise.wilcox.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.HoltWinters.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.acf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.density.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.isoreg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.lm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.ppr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.profile.nls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.spec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.stepfun.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/plot.ts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/poisson.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/poly.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/power.anova.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/power.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/power.prop.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/power.t.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/pp.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ppoints.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ppr.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/prcomp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.HoltWinters.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.arima.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.glm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.lm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.loess.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.nls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/predict.smooth.spline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/preplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/princomp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/print.power.htest.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/print.ts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/printCoefmat.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/profile.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/profile.nls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/proj.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/prop.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/prop.trend.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/qqnorm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/quade.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/quantile.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/r2dtable.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/rWishart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/read.ftable.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/rect.hclust.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/relevel.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/reorder.dendrogram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/reorder.factor.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/replications.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/reshape.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/residuals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/runmed.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/scatter.smooth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/screeplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/sd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/se.contrast.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/selfStart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/setNames.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/shapiro.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/simulate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/smooth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/smooth.spline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/smoothEnds.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/sortedXyData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/spec.ar.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/spec.pgram.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/spec.taper.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/spectrum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/splinefun.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/start.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/stat.anova.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/stats-defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/stats-deprecated.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/stats-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/step.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/stepfun.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/stl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/stlmethods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/summary.aov.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/summary.glm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/summary.lm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/summary.manova.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/summary.nls.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/summary.princomp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/supsmu.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/symnum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/t.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/termplot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/terms.formula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/terms.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/terms.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/time.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/toeplitz.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ts-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ts.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ts.plot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/ts.union.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/tsSmooth.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/tsdiag.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/tsp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/uniroot.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/update.formula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/update.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/var.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/varimax.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/vcov.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/weighted.mean.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/weighted.residuals.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/weights.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/wilcox.test.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/window.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/xtabs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats/html/zC.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/coef-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/confint-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/logLik-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/mle-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/mle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/plot-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/profile-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/profile.mle-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/show-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/stats4-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/summary-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/summary.mle-class.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/update-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/stats4/html/vcov-methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/Surv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/aareg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/agreg.fit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/aml.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/anova.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/attrassign.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/basehaz.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/bladder.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/cch.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/cgd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/clogit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/cluster.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/colon.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/cox.zph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/coxph.control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/coxph.detail.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/coxph.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/coxph.wtest.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/dsurvreg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/flchain.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/frailty.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/heart.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/is.ratetable.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/kidney.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/lines.survfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/logan.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/lung.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/mgus.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/model.frame.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/model.matrix.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/nwtco.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/ovarian.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/pbc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/pbcseq.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/plot.aareg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/plot.cox.zph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/plot.survfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/predict.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/predict.survreg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/print.aareg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/print.summary.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/print.summary.survexp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/print.summary.survfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/print.survfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/pspline.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/pyears.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/quantile.survfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/ratetable.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/ratetableDate.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/rats.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/rats2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/residuals.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/residuals.survreg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/ridge.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/stanford2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/strata.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/summary.aareg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/summary.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/summary.survexp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/summary.survfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survConcordance.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survSplit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survdiff.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survexp.fit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survexp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survexp.us.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survfit.coxph.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survfit.formula.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survfit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survfit.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survfitcoxph.fit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survival-internal.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survobrien.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survreg.control.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survreg.distributions.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survreg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survreg.object.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/survregDtest.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/tcut.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/tobin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/untangle.specials.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/uspop2.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/survival/html/veteran.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/TclInterface.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/TkCommands.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/TkWidgetcmds.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/TkWidgets.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/tclServiceMode.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/tcltk-defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/tcltk-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/tk_select.list.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tcltk/html/tkpager.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/HTMLheader.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/HTMLlinks.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/QC.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/Rd2HTML.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/Rd2txt_options.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/RdTextFilter.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/Rdiff.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/Rdindex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/Rdutils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/SweaveTeXFilter.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/add_datalist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/assertCondition.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/bibstyle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/buildVignette.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/buildVignettes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/charsets.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/checkFF.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/checkMD5sums.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/checkPoFiles.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/checkRd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/checkRdaFiles.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/checkTnF.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/checkVignettes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/check_packages_in_dir.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/codoc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/compactPDF.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/delimMatch.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/dependsOnPkgs.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/encoded.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/fileutils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/find_gs_cmd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/getDepList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/getVignetteInfo.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/installFoundDepends.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/makeLazyLoading.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/make_translations_pkg.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/md5sum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/package.dependencies.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/package_dependencies.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/parseLatex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/parse_Rd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/print.via.format.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/pskill.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/psnice.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/read.00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/showNonASCII.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/startDynamicHelp.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/testInstalledPackage.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/texi2dvi.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/toHTML.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/toRd.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/tools-defunct.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/tools-deprecated.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/tools-package.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/undoc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/update_pkg_po.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/vignetteDepends.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/vignetteEngine.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/writePACKAGES.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/tools/html/xgettext.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/00Index.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/BATCH.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/COMPILE.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/INSTALL.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/LINK.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/PkgUtils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/Question.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/REMOVE.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/RHOME.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/RShowDoc.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/RSiteSearch.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/Rprof.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/Rprofmem.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/Rscript.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/Rtangle.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/RweaveLatex.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/SHLIB.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/Sweave.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/SweaveSyntConv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/SweaveUtils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/URLencode.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/View.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/adist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/alarm.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/apropos.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/aregexec.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/aspell-utils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/aspell.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/available.packages.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/bibentry.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/browseEnv.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/browseURL.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/browseVignettes.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/bug.report.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/capture.output.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/changedFiles.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/chooseBioCmirror.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/chooseCRANmirror.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/citEntry.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/citation.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/cite.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/close.socket.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/combn.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/compareVersion.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/contrib.url.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/count.fields.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/create.post.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/data.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/dataentry.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/debugger.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/demo.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/download.file.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/download.packages.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/edit.data.frame.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/edit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/example.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/file.edit.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/filetest.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/findLineNum.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/fix.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/flush.console.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/format.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/getAnywhere.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/getFromNamespace.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/getParseData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/getS3method.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/glob2rx.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/globalVariables.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/head.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/help.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/help.request.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/help.search.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/help.start.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/install.packages.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/installed.packages.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/localeToCharset.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/ls_str.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/maintainer.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/make.packages.html.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/make.socket.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/memory.size.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/menu.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/methods.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/mirrorAdmin.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/modifyList.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/news.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/nsl.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/object.size.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/package.skeleton.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/packageDescription.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/packageName.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/packageStatus.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/page.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/person.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/process.events.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/prompt.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/promptData.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/promptPackage.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/rcompgen.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/read.DIF.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/read.fortran.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/read.fwf.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/read.socket.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/read.table.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/recover.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/relist.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/remove.packages.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/removeSource.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/roman.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/rtags.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/savehistory.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/select.list.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/sessionInfo.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/setRepositories.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/html/sourceutils.html + for i in '$RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html' + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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pushd /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/texmf/tex/latex + ln -s ../../../R/texmf/tex/latex R ~/build/BUILD/R-3.1.2 + popd + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/R-3.1.2 extracting debug info from /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/foreign/libs/foreign.so extracting debug info from /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/nlme/libs/nlme.so extracting debug info from /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/parallel/libs/parallel.so extracting debug info from /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/utils/libs/utils.so extracting debug info from /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/methods/libs/methods.so extracting debug info from /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/lib/R/library/graphics/libs/graphics.so extracting debug 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/builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/bin/Rscript *** WARNING: identical binaries are copied, not linked: /usr/bin/Rscript and /usr/lib/R/bin/Rscript /usr/lib/rpm/sepdebugcrcfix: Updated 34 CRC32s, 0 CRC32s did match. cpio: /tmp/Rtmp1NDUT1/R.INSTALL7663575c7d0b/nlme/src: Cannot stat: No such file or directory cpio: /tmp/Rtmp6iGrXK/R.INSTALL77ce119a6327/KernSmooth/src: Cannot stat: No such file or directory cpio: /tmp/RtmpDvWmHd/R.INSTALL774965834bfc/cluster/src: Cannot stat: No such file or directory cpio: /tmp/RtmpHCqfOp/R.INSTALL78ad5459a982/spatial/src: Cannot stat: No such file or directory cpio: /tmp/RtmpJXcr5F/R.INSTALL769afcb0977/survival/src: Cannot stat: No such file or directory cpio: /tmp/RtmpVfUAut/R.INSTALL787b287dfb54/class/src: Cannot stat: No such file or directory cpio: /tmp/RtmpaMs1Id/R.INSTALL789460142bb/nnet/src: Cannot stat: No such file or directory cpio: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src: Cannot stat: No such file or directory cpio: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/AMD/Source: Cannot stat: No such file or directory cpio: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/CHOLMOD/Lib: Cannot stat: No such file or directory cpio: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/COLAMD/Source: Cannot stat: No such file or directory cpio: /tmp/RtmpcFW7E6/R.INSTALL746132138350/Matrix/src/SuiteSparse_config: Cannot stat: No such file or directory cpio: /tmp/Rtmpj6B2Sw/R.INSTALL78cc41b5abd2/mgcv/src: Cannot stat: No such file or directory cpio: /tmp/Rtmpl5tbnE/R.INSTALL7429f525b67/MASS/src: Cannot stat: No such file or directory cpio: /tmp/Rtmps2T4cp/R.INSTALL778e5e083162/foreign/src: Cannot stat: No such file or directory cpio: /tmp/RtmpwBq3oM/R.INSTALL78084e824044/rpart/src: Cannot stat: No such file or directory cpio: /tmp/RtmpyH8rKn/R.INSTALL744532d6ba07/lattice/src: Cannot stat: No such file or directory 17707 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.uUJEr3 + umask 022 + cd /builddir/build/BUILD + cd R-3.1.2 + ulimit -s 16384 + make check make[1]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests/Examples' Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' Testing examples for package 'parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests/Examples' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running strict specific tests make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'array-subset.R' ... OK comparing 'array-subset.Rout' to './array-subset.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' running sloppy specific tests make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running regression tests ... make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK running code in 'reg-BLAS.R' ... OK make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running code in 'reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK running code in 'reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... FAILED make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[2]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running tests of Internet and socket functions expect some differences make[3]: Entering directory '/builddir/build/BUILD/R-3.1.2/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...14,16c14,355 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > # test do_download. > > nrow(available.packages(contrib.url("http://cran.r-project.org"))) > [1] 5993 > > > > # test url connections on http > > zz <- url("http://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [18] "<h1>The Comprehensive R Archive Network</h1>" > [19] "" > [20] "Your browser seems not to support frames," > [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN." > [22] "" > [23] "" > > close(zz) > > > > ## check graceful failure: > > try(zz <- url("http://foo.bar", "r")) > Error in url("http://foo.bar", "r") : cannot open the connection > In addition: Warning message: > In url("http://foo.bar", "r") : unable to connect to 'foo.bar' on port 80. > > > > # and via read.table, test http and ftp. > > > > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > > > ## everything from here on is directly over sockets > > if(!capabilities("sockets")) stop("no socket capabilities") > > > > # do the same thing via sockets (cut-down httpclient) > > httpget <- function (url, port = 80) > + { > + urlel <- strsplit(url, "/")[[1]] > + if (urlel[1] != "http:") stop("Not an http:// URL") > + host <- urlel[3] > + rurl <- paste(c("", urlel[-(1:3)]), collapse = "/") > + a <- make.socket(host, port = port) > + on.exit(close.socket(a)) > + headreq <- paste("HEAD", rurl, "HTTP/1.0\r\nConnection: Keep-Alive\r\nAccept: text/plain\r\n\r\n") > + write.socket(a, headreq) > + head <- read.socket(a, maxlen = 8000) > + b <- strsplit(head, "\n")[[1]] > + if (length(grep("200 OK", b[1])) == 0) stop(b[1]) > + len <- as.numeric(strsplit(grep("Content-Length", b, value = TRUE), > + ":")[[1]][2]) > + getreq <- paste("GET", rurl, "HTTP/1.0\r\nConnection: Keep-Alive\r\nAccept: text/plain\r\n\r\n") > + write.socket(a, getreq) > + junk <- read.socket(a, maxlen = nchar(head)) > + data <- "" > + b <- strsplit(c(head, junk), "\n") > + nn <- length(b[[1]]) > + if (length(b[[2]]) > nn) > + data <- paste(b[[2]][-(1:nn)], collapse = "\n") > + while (nchar(data) < len) { > + data <- paste(data, read.socket(a, maxlen = len - nchar(data)), > + sep = "") > + } > + strsplit(data, "\n")[[1]] > + } > > > > if(nzchar(Sys.getenv("http_proxy")) || nzchar(Sys.getenv("HTTP_PROXY"))) { > + cat("http proxy is set, so skip test of http over sockets\n") > + } else { > + httpget("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > + } > [1] "001 307 0930 36.58 0" "002 307 0940 36.73 0" "003 307 0950 36.93 0" > [4] "004 307 1000 37.15 0" "005 307 1010 37.23 0" "006 307 1020 37.24 0" > [7] "007 307 1030 37.24 0" "008 307 1040 36.90 0" "009 307 1050 36.95 0" > [10] "010 307 1100 36.89 0" "011 307 1110 36.95 0" "012 307 1120 37.00 0" > [13] "013 307 1130 36.90 0" "014 307 1140 36.99 0" "015 307 1150 36.99 0" > [16] "016 307 1200 37.01 0" "017 307 1210 37.04 0" "018 307 1220 37.04 0" > [19] "019 307 1230 37.14 0" "020 307 1240 37.07 0" "021 307 1250 36.98 0" > [22] "022 307 1300 37.01 0" "023 307 1310 36.97 0" "024 307 1320 36.97 0" > [25] "025 307 1330 37.12 0" "026 307 1340 37.13 0" "027 307 1350 37.14 0" > [28] "028 307 1400 37.15 0" "029 307 1410 37.17 0" "030 307 1420 37.12 0" > [31] "031 307 1430 37.12 0" "032 307 1440 37.17 0" "033 307 1450 37.28 0" > [34] "034 307 1500 37.28 0" "035 307 1510 37.44 0" "036 307 1520 37.51 0" > [37] "037 307 1530 37.64 0" "038 307 1540 37.51 0" "039 307 1550 37.98 1" > [40] "040 307 1600 38.02 1" "041 307 1610 38.00 1 " "042 307 1620 38.24 1 " > [43] "043 307 1630 38.10 1" "044 307 1640 38.24 1" "045 307 1650 38.11 1" > [46] "046 307 1700 38.02 1" "047 307 1710 38.11 1" "048 307 1720 38.01 1" > [49] "049 307 1730 37.91 1" "050 307 1740 37.96 1" "051 307 1750 38.03 1" > [52] "052 307 1800 38.17 1" "053 307 1810 38.19 1" "054 307 1820 38.18 1" > [55] "055 307 1830 38.15 1" "056 307 1840 38.04 1" "057 307 1850 37.96 1" > [58] "058 307 1900 37.84 1" "059 307 1910 37.83 1" "060 307 1920 37.84 1" > [61] "061 307 1930 37.74 1" "062 307 1940 37.76 1" "063 307 1950 37.76 1" > [64] "064 307 2000 37.64 1" "065 307 2010 37.63 1" "066 307 2020 38.06 1" > [67] "067 307 2030 38.19 1" "068 307 2040 38.35 1" "069 307 2050 38.25 1" > [70] "070 307 2100 37.86 1" "071 307 2110 37.95 1" "072 307 2120 37.95 1" > [73] "073 307 2130 37.76 1" "074 307 2140 37.60 1" "075 307 2150 37.89 1" > [76] "076 307 2200 37.86 1" "077 307 2210 37.71 1" "078 307 2220 37.78 1" > [79] "079 307 2230 37.82 1" "080 307 2240 37.76 1" "081 307 2250 37.81 1" > [82] "082 307 2300 37.84 1" "083 307 2310 38.01 1" "084 307 2320 38.10 1" > [85] "085 307 2330 38.15 1" "086 307 2340 37.92 1" "087 307 2350 37.64 1" > [88] "088 308 0000 37.70 1" "089 308 0010 37.46 1" "090 308 0020 37.41 1" > [91] "091 308 0030 37.46 1" "092 308 0040 37.56 1" "093 308 0050 37.55 1" > [94] "094 308 0100 37.75 1" "095 308 0110 37.76 1" "096 308 0120 37.73 1" > [97] "097 308 0130 37.77 1" "098 308 0140 38.01 1" "099 308 0150 38.04 1" > [100] "100 308 0200 38.07 1" > > > > finger <- function(user, host = "localhost", port = 79, print = TRUE) > + { > + if (!is.character(user)) > + stop("user name must be a string") > + user <- paste(user,"\r\n") > + socket <- make.socket(host, port) > + on.exit(close.socket(socket)) > + write.socket(socket, user) > + output <- character(0) > + repeat{ > + ss <- read.socket(socket) > + if (ss == "") break > + output <- paste(output, ss) > + } > + close.socket(socket) > + if (print) cat(output) > + invisible(output) > + } > > try(finger("root")) ## only works if your site provides a finger daemon > socket error: Connection refused > Error in make.socket(host, port) : socket not established > > OK make[3]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[2]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' make[1]: Leaving directory '/builddir/build/BUILD/R-3.1.2/tests' Processing files: R-3.1.2-1.fc21.i686 Processing files: R-core-3.1.2-1.fc21.i686 + exit 0 Provides: R-KernSmooth = 2.23.13 R-MASS = 7.3.35 R-Matrix = 1.1.4 R-base = 3.1.2 R-boot = 1.3.13 R-class = 7.3.11 R-cluster = 1.15.3 R-codetools = 0.2.9 R-core = 3.1.2-1.fc21 R-core(x86-32) = 3.1.2-1.fc21 R-datasets = 3.1.2 R-foreign = 0.8.61 R-grDevices = 3.1.2 R-graphics = 3.1.2 R-grid = 3.1.2 R-lattice = 0.20.29 R-methods = 3.1.2 R-mgcv = 1.8.3 R-nlme = 3.1.118 R-nnet = 7.3.8 R-parallel = 3.1.2 R-rpart = 4.1.8 R-spatial = 7.3.8 R-splines = 3.1.2 R-stats = 3.1.2 R-stats4 = 3.1.2 R-survival = 2.37.7 R-tcltk = 3.1.2 R-tools = 3.1.2 R-utils = 3.1.2 config(R-core) = 3.1.2-1.fc21 libR.so Requires(interp): /bin/sh /bin/sh /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(preun): /bin/sh Requires(postun): /bin/sh Requires(posttrans): /bin/sh Requires: /bin/bash /bin/sh ld-linux.so.2 ld-linux.so.2(GLIBC_2.1) libICE.so.6 libR.so libSM.so.6 libX11.so.6 libXext.so.6 libXmu.so.6 libXt.so.6 libblas.so.3 libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.11) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.16) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_2.8) libcairo.so.2 libdl.so.2 libdl.so.2(GLIBC_2.0) libdl.so.2(GLIBC_2.1) libgcc_s.so.1 libgcc_s.so.1(GCC_3.3.1) libgfortran.so.3 libglib-2.0.so.0 libgobject-2.0.so.0 libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libicui18n.so.52 libicuuc.so.52 libjpeg.so.62 libjpeg.so.62(LIBJPEG_6.2) liblapack.so.3 liblzma.so.5 liblzma.so.5(XZ_5.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libpango-1.0.so.0 libpangocairo-1.0.so.0 libpcre.so.1 libpng16.so.16 libpng16.so.16(PNG16_0) libpthread.so.0 libpthread.so.0(GLIBC_2.0) libpthread.so.0(GLIBC_2.2) libquadmath.so.0 libreadline.so.6 librt.so.1 librt.so.1(GLIBC_2.2) libtcl8.6.so libtiff.so.5 libtiff.so.5(LIBTIFF_4.0) libtk8.6.so libtre.so.5 libz.so.1 rtld(GNU_HASH) Obsoletes: R-Matrix < 0.999375-7 Processing files: R-core-devel-3.1.2-1.fc21.i686 Provides: R-Matrix-devel = 1.1.4 R-core-devel = 3.1.2-1.fc21 R-core-devel(x86-32) = 3.1.2-1.fc21 pkgconfig(libR) = 3.1.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Obsoletes: R-Matrix-devel < 0.999375-7 Processing files: R-devel-3.1.2-1.fc21.i686 Processing files: R-java-3.1.2-1.fc21.i686 Processing files: R-java-devel-3.1.2-1.fc21.i686 Processing files: libRmath-3.1.2-1.fc21.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.uYg5g6 + umask 022 + cd /builddir/build/BUILD + cd R-3.1.2 + DOCDIR=/builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/doc/libRmath + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/doc/libRmath + cp -pr doc/COPYING /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386/usr/share/doc/libRmath + exit 0 Provides: libRmath = 3.1.2-1.fc21 libRmath(x86-32) = 3.1.2-1.fc21 libRmath.so Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgomp.so.1 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libpthread.so.0 libpthread.so.0(GLIBC_2.0) rtld(GNU_HASH) Processing files: libRmath-devel-3.1.2-1.fc21.i686 Provides: libRmath-devel = 3.1.2-1.fc21 libRmath-devel(x86-32) = 3.1.2-1.fc21 pkgconfig(libRmath) = 3.1.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: libRmath-static-3.1.2-1.fc21.i686 Provides: libRmath-static = 3.1.2-1.fc21 libRmath-static(x86-32) = 3.1.2-1.fc21 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debuginfo-3.1.2-1.fc21.i686 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 Wrote: /builddir/build/RPMS/R-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/R-core-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/R-core-devel-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/R-devel-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/R-java-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/R-java-devel-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/libRmath-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/libRmath-devel-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/libRmath-static-3.1.2-1.fc21.i686.rpm Wrote: /builddir/build/RPMS/R-debuginfo-3.1.2-1.fc21.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Izss3A + umask 022 + cd /builddir/build/BUILD + cd R-3.1.2 + rm -rf /builddir/build/BUILDROOT/R-3.1.2-1.fc21.i386 + exit 0 Child return code was: 0 LEAVE do -->