Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-SummarizedExperiment.spec'], logger=uid=1000user='mockbuild'nspawn_args=[]timeout=172800printOutput=Falseenv={'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100'}shell=FalsechrootPath='/var/lib/mock/f24-build-8754947-757873/root'gid=425) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-SummarizedExperiment.spec'] with env {'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100'} and shell False Building target platforms: noarch Building for target noarch Wrote: /builddir/build/SRPMS/R-SummarizedExperiment-1.6.3-1.fc24.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-SummarizedExperiment.spec'], logger=uid=1000user='mockbuild'nspawn_args=[]timeout=172800printOutput=Falseenv={'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100'}shell=FalsechrootPath='/var/lib/mock/f24-build-8754947-757873/root'gid=425) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-SummarizedExperiment.spec'] with env {'PS1': ' \\s-\\v\\$ ', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'en_US.UTF-8', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'TERM': 'vt100'} and shell False Building target platforms: noarch Building for target noarch Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.FCI4VK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf SummarizedExperiment + /usr/bin/mkdir -p SummarizedExperiment + cd SummarizedExperiment + /usr/bin/gzip -dc /builddir/build/SOURCES/SummarizedExperiment_1.6.3.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IZUKRs + umask 022 + cd /builddir/build/BUILD + cd SummarizedExperiment + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.j7lJNa + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch ++ dirname /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch + cd SummarizedExperiment + mkdir -p /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch/usr/share/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch/usr/share/R/library SummarizedExperiment * installing *source* package 'SummarizedExperiment' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'SummarizedExperiment' finding HTML links ... done Assays-class html finding level-2 HTML links ... done Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/Assays-class.Rd:117: missing file link 'SimpleList' RangedSummarizedExperiment-class html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:116: missing file link 'DataFrame' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:119: missing file link 'DataFrame' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:122: missing file link 'GRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:123: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:126: missing file link 'GRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:126: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:151: missing file link 'GRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:152: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:216: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:217: missing file link 'isDisjoint' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:218: missing file link 'coverage' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:219: missing file link 'findOverlaps' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:220: missing file link 'nearest' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:264: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:265: missing file link 'isDisjoint' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:266: missing file link 'coverage' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:267: missing file link 'findOverlaps' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:268: missing file link 'nearest' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:271: missing file link 'GRanges' SummarizedExperiment-class html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/SummarizedExperiment-class.Rd:133: missing file link 'mcols' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/SummarizedExperiment-class.Rd:206: missing file link 'mcols' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/SummarizedExperiment-class.Rd:393: missing file link 'DataFrame' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/SummarizedExperiment-class.Rd:393: missing file link 'SimpleList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/SummarizedExperiment-class.Rd:394: missing file link 'Annotated' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/SummarizedExperiment-class.Rd:396: missing file link 'metadata' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/SummarizedExperiment-class.Rd:397: missing file link 'mcols' coverage-methods html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:26: missing file link 'coverage' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:34: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:34: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:40: missing file link 'coverage' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:42: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:42: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:47: missing file link 'coverage' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:55: missing file link 'coverage' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:57: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/coverage-methods.Rd:58: missing file link 'GRangesList' findOverlaps-methods html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:43: missing file link 'findOverlaps' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:47: missing file link 'findOverlaps' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:55: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:55: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:63: missing file link 'findOverlaps' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:65: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:65: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:70: missing file link 'findOverlaps' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:78: missing file link 'findOverlaps' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:80: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/findOverlaps-methods.Rd:81: missing file link 'GRangesList' inter-range-methods html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:30: missing file link 'isDisjoint' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:38: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:38: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:48: missing file link 'isDisjoint' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:50: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:50: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:55: missing file link 'isDisjoint' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:63: missing file link 'isDisjoint' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:65: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/inter-range-methods.Rd:66: missing file link 'GRangesList' intra-range-methods html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:57: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:61: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:65: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:69: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:73: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:81: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:81: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:91: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:93: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:93: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:101: missing file link 'shift' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:103: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/intra-range-methods.Rd:104: missing file link 'GRangesList' makeSummarizedExperimentFromDataFrame html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromDataFrame.Rd:31: missing file link 'DataFrame' makeSummarizedExperimentFromExpressionSet html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:17: missing file link 'ExpressionSet' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:19: missing file link 'ExpressionSet' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:38: missing file link 'ExpressionSet' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:41: missing file link 'ExpressionSet' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:44: missing file link 'rownames' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:44: missing file link 'GRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:46: missing file link 'ExpressionSet' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:63: missing file link 'ExpressionSet' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:69: missing file link 'ExpressionSet' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:78: missing file link 'ExpressionSet' nearest-methods html Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:66: missing file link 'nearest' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:79: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:79: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:88: missing file link 'nearest' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:90: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:90: missing file link 'GRangesList' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:95: missing file link 'nearest' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:103: missing file link 'nearest' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:105: missing file link 'GenomicRanges' Rd warning: /builddir/build/BUILD/SummarizedExperiment/SummarizedExperiment/man/nearest-methods.Rd:106: missing file link 'GRangesList' readKallisto html saveHDF5SummarizedExperiment html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (SummarizedExperiment) + test -d SummarizedExperiment/src + rm -rf /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch/usr/share/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/SummarizedExperiment + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.nrfGmk + umask 022 + cd /builddir/build/BUILD + cd SummarizedExperiment + exit 0 Processing files: R-SummarizedExperiment-1.6.3-1.fc24.noarch Provides: R-SummarizedExperiment = 1.6.3-1.fc24 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch Wrote: /builddir/build/RPMS/R-SummarizedExperiment-1.6.3-1.fc24.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ExQnzv + umask 022 + cd /builddir/build/BUILD + cd SummarizedExperiment + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-SummarizedExperiment-1.6.3-1.fc24.noarch + exit 0 Child return code was: 0