Mock Version: 1.2.14
Mock Version: 1.2.14
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/ProDy.spec'], printOutput=FalsechrootPath='/var/lib/mock/f22-build-4687863-563673/root'env={'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'LANG': 'en_US.UTF-8'}uid=1000logger=<mockbuild.trace_decorator.getLog object at 0xb5e5a030>shell=Falsegid=425timeout=172800user='mockbuild')
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/ProDy.spec'] with env {'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'LANG': 'en_US.UTF-8'} and shell False
sh: /usr/bin/python: No such file or directory
warning: Could not canonicalize hostname: arm04-builder20.arm.fedoraproject.org
Building target platforms: armv7hl
Building for target armv7hl
Wrote: /builddir/build/SRPMS/ProDy-1.7.1-3.fc22.src.rpm
Child return code was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps  /builddir/build/SPECS/ProDy.spec '], printOutput=Falseuser='mockbuild'chrootPath='/var/lib/mock/f22-build-4687863-563673/root'private_network=Trueuid=1000logger=<mockbuild.trace_decorator.getLog object at 0xb5e5a030>shell=Falsegid=425timeout=172800env={'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'LANG': 'en_US.UTF-8'})
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps  /builddir/build/SPECS/ProDy.spec '] with env {'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'TERM': 'vt100', 'HOME': '/builddir', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: armv7hl
Building for target armv7hl
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QAcAMQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf ProDy-1.7.1
+ /usr/bin/mkdir -p ProDy-1.7.1
+ cd ProDy-1.7.1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/ProDy-1.7.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv ProDy-1.7 python2
+ pushd python2
~/build/BUILD/ProDy-1.7.1/python2 ~/build/BUILD/ProDy-1.7.1
+ rm prody/atomic/pyparsing.py
+ rm -rf prody/KDTree
+ rm prody/proteins/pairwise2.py prody/proteins/cpairwise2.c
+ rm prody/apps/argparse.py
+ popd
~/build/BUILD/ProDy-1.7.1
+ cp -a python2 python3
+ pushd python3
~/build/BUILD/ProDy-1.7.1/python3 ~/build/BUILD/ProDy-1.7.1
Patch #0 (ProDy-fix_tab_errors.patch):
+ echo 'Patch #0 (ProDy-fix_tab_errors.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/ProDy-fix_tab_errors.patch
+ /usr/bin/patch -p0 --fuzz=0
patching file prody/database/pfam.py
patching file prody/utilities/pathtools.py
patching file prody/atomic/subset.py
patching file prody/sequence/analysis.py
+ popd
~/build/BUILD/ProDy-1.7.1
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.HVvGIZ
+ umask 022
~/build/BUILD/ProDy-1.7.1/python2 ~/build/BUILD/ProDy-1.7.1
+ cd /builddir/build/BUILD
+ cd ProDy-1.7.1
+ pushd python2
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16  -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now'
+ /usr/bin/python2 setup.py build '--executable=/usr/bin/python2 -s'
running build
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/prody
copying prody/__init__.py -> build/lib.linux-armv7l-2.7/prody
creating build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/residue.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/segment.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/pointer.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/atom.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/functions.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/atomic.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/fields.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/hierview.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/subset.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/bond.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/selection.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/atommap.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/flags.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/select.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/__init__.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/chain.py -> build/lib.linux-armv7l-2.7/prody/atomic
copying prody/atomic/atomgroup.py -> build/lib.linux-armv7l-2.7/prody/atomic
creating build/lib.linux-armv7l-2.7/prody/database
copying prody/database/pfam.py -> build/lib.linux-armv7l-2.7/prody/database
copying prody/database/__init__.py -> build/lib.linux-armv7l-2.7/prody/database
creating build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/sampling.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/compare.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/gnm.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/bbenm.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/editing.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/analysis.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/gamma.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/pca.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/functions.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/plotting.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/nmdfile.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/nma.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/anm.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/mode.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/rtb.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/heatmapper.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/modeset.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/__init__.py -> build/lib.linux-armv7l-2.7/prody/dynamics
copying prody/dynamics/exanm.py -> build/lib.linux-armv7l-2.7/prody/dynamics
creating build/lib.linux-armv7l-2.7/prody/ensemble
copying prody/ensemble/conformation.py -> build/lib.linux-armv7l-2.7/prody/ensemble
copying prody/ensemble/functions.py -> build/lib.linux-armv7l-2.7/prody/ensemble
copying prody/ensemble/pdbensemble.py -> build/lib.linux-armv7l-2.7/prody/ensemble
copying prody/ensemble/ensemble.py -> build/lib.linux-armv7l-2.7/prody/ensemble
copying prody/ensemble/__init__.py -> build/lib.linux-armv7l-2.7/prody/ensemble
creating build/lib.linux-armv7l-2.7/prody/kdtree
copying prody/kdtree/__init__.py -> build/lib.linux-armv7l-2.7/prody/kdtree
copying prody/kdtree/kdtree.py -> build/lib.linux-armv7l-2.7/prody/kdtree
creating build/lib.linux-armv7l-2.7/prody/measure
copying prody/measure/transform.py -> build/lib.linux-armv7l-2.7/prody/measure
copying prody/measure/measure.py -> build/lib.linux-armv7l-2.7/prody/measure
copying prody/measure/__init__.py -> build/lib.linux-armv7l-2.7/prody/measure
copying prody/measure/contacts.py -> build/lib.linux-armv7l-2.7/prody/measure
creating build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/pdbligands.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/compare.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/localpdb.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/functions.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/blastpdb.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/wwpdb.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/pdbfile.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/stride.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/pdbclusters.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/header.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/dssp.py -> build/lib.linux-armv7l-2.7/prody/proteins
copying prody/proteins/__init__.py -> build/lib.linux-armv7l-2.7/prody/proteins
creating build/lib.linux-armv7l-2.7/prody/sequence
copying prody/sequence/msafile.py -> build/lib.linux-armv7l-2.7/prody/sequence
copying prody/sequence/sequence.py -> build/lib.linux-armv7l-2.7/prody/sequence
copying prody/sequence/analysis.py -> build/lib.linux-armv7l-2.7/prody/sequence
copying prody/sequence/plotting.py -> build/lib.linux-armv7l-2.7/prody/sequence
copying prody/sequence/msa.py -> build/lib.linux-armv7l-2.7/prody/sequence
copying prody/sequence/__init__.py -> build/lib.linux-armv7l-2.7/prody/sequence
creating build/lib.linux-armv7l-2.7/prody/trajectory
copying prody/trajectory/trajfile.py -> build/lib.linux-armv7l-2.7/prody/trajectory
copying prody/trajectory/trajectory.py -> build/lib.linux-armv7l-2.7/prody/trajectory
copying prody/trajectory/dcdfile.py -> build/lib.linux-armv7l-2.7/prody/trajectory
copying prody/trajectory/psffile.py -> build/lib.linux-armv7l-2.7/prody/trajectory
copying prody/trajectory/frame.py -> build/lib.linux-armv7l-2.7/prody/trajectory
copying prody/trajectory/trajbase.py -> build/lib.linux-armv7l-2.7/prody/trajectory
copying prody/trajectory/__init__.py -> build/lib.linux-armv7l-2.7/prody/trajectory
creating build/lib.linux-armv7l-2.7/prody/utilities
copying prody/utilities/logger.py -> build/lib.linux-armv7l-2.7/prody/utilities
copying prody/utilities/pathtools.py -> build/lib.linux-armv7l-2.7/prody/utilities
copying prody/utilities/settings.py -> build/lib.linux-armv7l-2.7/prody/utilities
copying prody/utilities/doctools.py -> build/lib.linux-armv7l-2.7/prody/utilities
copying prody/utilities/misctools.py -> build/lib.linux-armv7l-2.7/prody/utilities
copying prody/utilities/__init__.py -> build/lib.linux-armv7l-2.7/prody/utilities
copying prody/utilities/checkers.py -> build/lib.linux-armv7l-2.7/prody/utilities
creating build/lib.linux-armv7l-2.7/prody/apps
copying prody/apps/apptools.py -> build/lib.linux-armv7l-2.7/prody/apps
copying prody/apps/__init__.py -> build/lib.linux-armv7l-2.7/prody/apps
creating build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/__init__.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-armv7l-2.7/prody/apps/prody_apps
creating build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/__init__.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-armv7l-2.7/prody/apps/evol_apps
creating build/lib.linux-armv7l-2.7/prody/tests
copying prody/tests/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests
creating build/lib.linux-armv7l-2.7/prody/tests/apps
copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-armv7l-2.7/prody/tests/apps
copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-armv7l-2.7/prody/tests/apps
copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-armv7l-2.7/prody/tests/apps
copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-armv7l-2.7/prody/tests/apps
copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-armv7l-2.7/prody/tests/apps
copying prody/tests/apps/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/apps
creating build/lib.linux-armv7l-2.7/prody/tests/atomic
copying prody/tests/atomic/test_atommap.py -> build/lib.linux-armv7l-2.7/prody/tests/atomic
copying prody/tests/atomic/test_hierview.py -> build/lib.linux-armv7l-2.7/prody/tests/atomic
copying prody/tests/atomic/test_atomic.py -> build/lib.linux-armv7l-2.7/prody/tests/atomic
copying prody/tests/atomic/test_fragment.py -> build/lib.linux-armv7l-2.7/prody/tests/atomic
copying prody/tests/atomic/test_subset.py -> build/lib.linux-armv7l-2.7/prody/tests/atomic
copying prody/tests/atomic/test_select.py -> build/lib.linux-armv7l-2.7/prody/tests/atomic
copying prody/tests/atomic/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/atomic
creating build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
creating build/lib.linux-armv7l-2.7/prody/tests/dynamics
copying prody/tests/dynamics/test_editing.py -> build/lib.linux-armv7l-2.7/prody/tests/dynamics
copying prody/tests/dynamics/test_enms.py -> build/lib.linux-armv7l-2.7/prody/tests/dynamics
copying prody/tests/dynamics/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/dynamics
creating build/lib.linux-armv7l-2.7/prody/tests/ensemble
copying prody/tests/ensemble/test_functions.py -> build/lib.linux-armv7l-2.7/prody/tests/ensemble
copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-armv7l-2.7/prody/tests/ensemble
copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-armv7l-2.7/prody/tests/ensemble
copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-armv7l-2.7/prody/tests/ensemble
copying prody/tests/ensemble/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/ensemble
creating build/lib.linux-armv7l-2.7/prody/tests/kdtree
copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-armv7l-2.7/prody/tests/kdtree
copying prody/tests/kdtree/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/kdtree
creating build/lib.linux-armv7l-2.7/prody/tests/measure
copying prody/tests/measure/test_transform.py -> build/lib.linux-armv7l-2.7/prody/tests/measure
copying prody/tests/measure/test_measure.py -> build/lib.linux-armv7l-2.7/prody/tests/measure
copying prody/tests/measure/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/measure
copying prody/tests/measure/test_contacts.py -> build/lib.linux-armv7l-2.7/prody/tests/measure
creating build/lib.linux-armv7l-2.7/prody/tests/proteins
copying prody/tests/proteins/test_dssp.py -> build/lib.linux-armv7l-2.7/prody/tests/proteins
copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-armv7l-2.7/prody/tests/proteins
copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-armv7l-2.7/prody/tests/proteins
copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-armv7l-2.7/prody/tests/proteins
copying prody/tests/proteins/test_header.py -> build/lib.linux-armv7l-2.7/prody/tests/proteins
copying prody/tests/proteins/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/proteins
creating build/lib.linux-armv7l-2.7/prody/tests/sequence
copying prody/tests/sequence/test_msa.py -> build/lib.linux-armv7l-2.7/prody/tests/sequence
copying prody/tests/sequence/test_msafile.py -> build/lib.linux-armv7l-2.7/prody/tests/sequence
copying prody/tests/sequence/test_sequence.py -> build/lib.linux-armv7l-2.7/prody/tests/sequence
copying prody/tests/sequence/test_analysis.py -> build/lib.linux-armv7l-2.7/prody/tests/sequence
copying prody/tests/sequence/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/sequence
creating build/lib.linux-armv7l-2.7/prody/tests/trajectory
copying prody/tests/trajectory/test_frame.py -> build/lib.linux-armv7l-2.7/prody/tests/trajectory
copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-armv7l-2.7/prody/tests/trajectory
copying prody/tests/trajectory/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/trajectory
creating build/lib.linux-armv7l-2.7/prody/tests/utilities
copying prody/tests/utilities/test_misctools.py -> build/lib.linux-armv7l-2.7/prody/tests/utilities
copying prody/tests/utilities/test_checkers.py -> build/lib.linux-armv7l-2.7/prody/tests/utilities
copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-armv7l-2.7/prody/tests/utilities
copying prody/tests/utilities/__init__.py -> build/lib.linux-armv7l-2.7/prody/tests/utilities
copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-armv7l-2.7/prody/tests/datafiles
running build_ext
building 'prody.dynamics.rtbtools' extension
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/prody
creating build/temp.linux-armv7l-2.7/prody/dynamics
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c prody/dynamics/rtbtools.c -o build/temp.linux-armv7l-2.7/prody/dynamics/rtbtools.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-2.7/prody/dynamics/rtbtools.o -L/usr/lib -lpython2.7 -o build/lib.linux-armv7l-2.7/prody/dynamics/rtbtools.so
building 'prody.sequence.msatools' extension
creating build/temp.linux-armv7l-2.7/prody/sequence
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c prody/sequence/msatools.c -o build/temp.linux-armv7l-2.7/prody/sequence/msatools.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-2.7/prody/sequence/msatools.o -L/usr/lib -lpython2.7 -o build/lib.linux-armv7l-2.7/prody/sequence/msatools.so
building 'prody.sequence.msaio' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c prody/sequence/msaio.c -o build/temp.linux-armv7l-2.7/prody/sequence/msaio.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-2.7/prody/sequence/msaio.o -L/usr/lib -lpython2.7 -o build/lib.linux-armv7l-2.7/prody/sequence/msaio.so
building 'prody.sequence.seqtools' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c prody/sequence/seqtools.c -o build/temp.linux-armv7l-2.7/prody/sequence/seqtools.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-2.7/prody/sequence/seqtools.o -L/usr/lib -lpython2.7 -o build/lib.linux-armv7l-2.7/prody/sequence/seqtools.so
building 'prody.kdtree._CKDTree' extension
creating build/temp.linux-armv7l-2.7/prody/kdtree
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c prody/kdtree/KDTree.c -o build/temp.linux-armv7l-2.7/prody/kdtree/KDTree.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-armv7l-2.7/prody/kdtree/KDTreemodule.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-2.7/prody/kdtree/KDTree.o build/temp.linux-armv7l-2.7/prody/kdtree/KDTreemodule.o -L/usr/lib -lpython2.7 -o build/lib.linux-armv7l-2.7/prody/kdtree/_CKDTree.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/prody -> build/scripts-2.7
copying and adjusting scripts/evol -> build/scripts-2.7
changing mode of build/scripts-2.7/prody from 644 to 755
changing mode of build/scripts-2.7/evol from 644 to 755
+ popd
~/build/BUILD/ProDy-1.7.1
~/build/BUILD/ProDy-1.7.1/python3 ~/build/BUILD/ProDy-1.7.1
+ pushd python3
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16  -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s'
running build
running build_py
creating build
creating build/lib.linux-armv7l-3.4
creating build/lib.linux-armv7l-3.4/prody
copying prody/__init__.py -> build/lib.linux-armv7l-3.4/prody
creating build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/residue.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/segment.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/pointer.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/atom.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/functions.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/atomic.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/fields.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/hierview.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/subset.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/bond.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/selection.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/atommap.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/flags.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/select.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/__init__.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/chain.py -> build/lib.linux-armv7l-3.4/prody/atomic
copying prody/atomic/atomgroup.py -> build/lib.linux-armv7l-3.4/prody/atomic
creating build/lib.linux-armv7l-3.4/prody/database
copying prody/database/pfam.py -> build/lib.linux-armv7l-3.4/prody/database
copying prody/database/__init__.py -> build/lib.linux-armv7l-3.4/prody/database
creating build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/sampling.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/compare.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/gnm.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/bbenm.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/editing.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/analysis.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/gamma.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/pca.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/functions.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/plotting.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/nmdfile.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/nma.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/anm.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/mode.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/rtb.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/heatmapper.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/modeset.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/__init__.py -> build/lib.linux-armv7l-3.4/prody/dynamics
copying prody/dynamics/exanm.py -> build/lib.linux-armv7l-3.4/prody/dynamics
creating build/lib.linux-armv7l-3.4/prody/ensemble
copying prody/ensemble/conformation.py -> build/lib.linux-armv7l-3.4/prody/ensemble
copying prody/ensemble/functions.py -> build/lib.linux-armv7l-3.4/prody/ensemble
copying prody/ensemble/pdbensemble.py -> build/lib.linux-armv7l-3.4/prody/ensemble
copying prody/ensemble/ensemble.py -> build/lib.linux-armv7l-3.4/prody/ensemble
copying prody/ensemble/__init__.py -> build/lib.linux-armv7l-3.4/prody/ensemble
creating build/lib.linux-armv7l-3.4/prody/kdtree
copying prody/kdtree/__init__.py -> build/lib.linux-armv7l-3.4/prody/kdtree
copying prody/kdtree/kdtree.py -> build/lib.linux-armv7l-3.4/prody/kdtree
creating build/lib.linux-armv7l-3.4/prody/measure
copying prody/measure/transform.py -> build/lib.linux-armv7l-3.4/prody/measure
copying prody/measure/measure.py -> build/lib.linux-armv7l-3.4/prody/measure
copying prody/measure/__init__.py -> build/lib.linux-armv7l-3.4/prody/measure
copying prody/measure/contacts.py -> build/lib.linux-armv7l-3.4/prody/measure
creating build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/pdbligands.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/compare.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/localpdb.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/functions.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/blastpdb.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/wwpdb.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/pdbfile.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/stride.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/pdbclusters.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/header.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/dssp.py -> build/lib.linux-armv7l-3.4/prody/proteins
copying prody/proteins/__init__.py -> build/lib.linux-armv7l-3.4/prody/proteins
creating build/lib.linux-armv7l-3.4/prody/sequence
copying prody/sequence/msafile.py -> build/lib.linux-armv7l-3.4/prody/sequence
copying prody/sequence/sequence.py -> build/lib.linux-armv7l-3.4/prody/sequence
copying prody/sequence/analysis.py -> build/lib.linux-armv7l-3.4/prody/sequence
copying prody/sequence/plotting.py -> build/lib.linux-armv7l-3.4/prody/sequence
copying prody/sequence/msa.py -> build/lib.linux-armv7l-3.4/prody/sequence
copying prody/sequence/__init__.py -> build/lib.linux-armv7l-3.4/prody/sequence
creating build/lib.linux-armv7l-3.4/prody/trajectory
copying prody/trajectory/trajfile.py -> build/lib.linux-armv7l-3.4/prody/trajectory
copying prody/trajectory/trajectory.py -> build/lib.linux-armv7l-3.4/prody/trajectory
copying prody/trajectory/dcdfile.py -> build/lib.linux-armv7l-3.4/prody/trajectory
copying prody/trajectory/psffile.py -> build/lib.linux-armv7l-3.4/prody/trajectory
copying prody/trajectory/frame.py -> build/lib.linux-armv7l-3.4/prody/trajectory
copying prody/trajectory/trajbase.py -> build/lib.linux-armv7l-3.4/prody/trajectory
copying prody/trajectory/__init__.py -> build/lib.linux-armv7l-3.4/prody/trajectory
creating build/lib.linux-armv7l-3.4/prody/utilities
copying prody/utilities/logger.py -> build/lib.linux-armv7l-3.4/prody/utilities
copying prody/utilities/pathtools.py -> build/lib.linux-armv7l-3.4/prody/utilities
copying prody/utilities/settings.py -> build/lib.linux-armv7l-3.4/prody/utilities
copying prody/utilities/doctools.py -> build/lib.linux-armv7l-3.4/prody/utilities
copying prody/utilities/misctools.py -> build/lib.linux-armv7l-3.4/prody/utilities
copying prody/utilities/__init__.py -> build/lib.linux-armv7l-3.4/prody/utilities
copying prody/utilities/checkers.py -> build/lib.linux-armv7l-3.4/prody/utilities
creating build/lib.linux-armv7l-3.4/prody/apps
copying prody/apps/apptools.py -> build/lib.linux-armv7l-3.4/prody/apps
copying prody/apps/__init__.py -> build/lib.linux-armv7l-3.4/prody/apps
creating build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/__init__.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-armv7l-3.4/prody/apps/prody_apps
creating build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/__init__.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-armv7l-3.4/prody/apps/evol_apps
creating build/lib.linux-armv7l-3.4/prody/tests
copying prody/tests/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests
creating build/lib.linux-armv7l-3.4/prody/tests/apps
copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-armv7l-3.4/prody/tests/apps
copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-armv7l-3.4/prody/tests/apps
copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-armv7l-3.4/prody/tests/apps
copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-armv7l-3.4/prody/tests/apps
copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-armv7l-3.4/prody/tests/apps
copying prody/tests/apps/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/apps
creating build/lib.linux-armv7l-3.4/prody/tests/atomic
copying prody/tests/atomic/test_atommap.py -> build/lib.linux-armv7l-3.4/prody/tests/atomic
copying prody/tests/atomic/test_hierview.py -> build/lib.linux-armv7l-3.4/prody/tests/atomic
copying prody/tests/atomic/test_atomic.py -> build/lib.linux-armv7l-3.4/prody/tests/atomic
copying prody/tests/atomic/test_fragment.py -> build/lib.linux-armv7l-3.4/prody/tests/atomic
copying prody/tests/atomic/test_subset.py -> build/lib.linux-armv7l-3.4/prody/tests/atomic
copying prody/tests/atomic/test_select.py -> build/lib.linux-armv7l-3.4/prody/tests/atomic
copying prody/tests/atomic/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/atomic
creating build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
creating build/lib.linux-armv7l-3.4/prody/tests/dynamics
copying prody/tests/dynamics/test_editing.py -> build/lib.linux-armv7l-3.4/prody/tests/dynamics
copying prody/tests/dynamics/test_enms.py -> build/lib.linux-armv7l-3.4/prody/tests/dynamics
copying prody/tests/dynamics/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/dynamics
creating build/lib.linux-armv7l-3.4/prody/tests/ensemble
copying prody/tests/ensemble/test_functions.py -> build/lib.linux-armv7l-3.4/prody/tests/ensemble
copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-armv7l-3.4/prody/tests/ensemble
copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-armv7l-3.4/prody/tests/ensemble
copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-armv7l-3.4/prody/tests/ensemble
copying prody/tests/ensemble/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/ensemble
creating build/lib.linux-armv7l-3.4/prody/tests/kdtree
copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-armv7l-3.4/prody/tests/kdtree
copying prody/tests/kdtree/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/kdtree
creating build/lib.linux-armv7l-3.4/prody/tests/measure
copying prody/tests/measure/test_transform.py -> build/lib.linux-armv7l-3.4/prody/tests/measure
copying prody/tests/measure/test_measure.py -> build/lib.linux-armv7l-3.4/prody/tests/measure
copying prody/tests/measure/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/measure
copying prody/tests/measure/test_contacts.py -> build/lib.linux-armv7l-3.4/prody/tests/measure
creating build/lib.linux-armv7l-3.4/prody/tests/proteins
copying prody/tests/proteins/test_dssp.py -> build/lib.linux-armv7l-3.4/prody/tests/proteins
copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-armv7l-3.4/prody/tests/proteins
copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-armv7l-3.4/prody/tests/proteins
copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-armv7l-3.4/prody/tests/proteins
copying prody/tests/proteins/test_header.py -> build/lib.linux-armv7l-3.4/prody/tests/proteins
copying prody/tests/proteins/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/proteins
creating build/lib.linux-armv7l-3.4/prody/tests/sequence
copying prody/tests/sequence/test_msa.py -> build/lib.linux-armv7l-3.4/prody/tests/sequence
copying prody/tests/sequence/test_msafile.py -> build/lib.linux-armv7l-3.4/prody/tests/sequence
copying prody/tests/sequence/test_sequence.py -> build/lib.linux-armv7l-3.4/prody/tests/sequence
copying prody/tests/sequence/test_analysis.py -> build/lib.linux-armv7l-3.4/prody/tests/sequence
copying prody/tests/sequence/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/sequence
creating build/lib.linux-armv7l-3.4/prody/tests/trajectory
copying prody/tests/trajectory/test_frame.py -> build/lib.linux-armv7l-3.4/prody/tests/trajectory
copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-armv7l-3.4/prody/tests/trajectory
copying prody/tests/trajectory/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/trajectory
creating build/lib.linux-armv7l-3.4/prody/tests/utilities
copying prody/tests/utilities/test_misctools.py -> build/lib.linux-armv7l-3.4/prody/tests/utilities
copying prody/tests/utilities/test_checkers.py -> build/lib.linux-armv7l-3.4/prody/tests/utilities
copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-armv7l-3.4/prody/tests/utilities
copying prody/tests/utilities/__init__.py -> build/lib.linux-armv7l-3.4/prody/tests/utilities
copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-armv7l-3.4/prody/tests/datafiles
running build_ext
building 'prody.dynamics.rtbtools' extension
creating build/temp.linux-armv7l-3.4
creating build/temp.linux-armv7l-3.4/prody
creating build/temp.linux-armv7l-3.4/prody/dynamics
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python3.4/site-packages/numpy/core/include -I/usr/include/python3.4m -c prody/dynamics/rtbtools.c -o build/temp.linux-armv7l-3.4/prody/dynamics/rtbtools.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-3.4/prody/dynamics/rtbtools.o -L/usr/lib -lpython3.4m -o build/lib.linux-armv7l-3.4/prody/dynamics/rtbtools.cpython-34m.so
building 'prody.sequence.msatools' extension
creating build/temp.linux-armv7l-3.4/prody/sequence
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python3.4/site-packages/numpy/core/include -I/usr/include/python3.4m -c prody/sequence/msatools.c -o build/temp.linux-armv7l-3.4/prody/sequence/msatools.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-3.4/prody/sequence/msatools.o -L/usr/lib -lpython3.4m -o build/lib.linux-armv7l-3.4/prody/sequence/msatools.cpython-34m.so
building 'prody.sequence.msaio' extension
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python3.4/site-packages/numpy/core/include -I/usr/include/python3.4m -c prody/sequence/msaio.c -o build/temp.linux-armv7l-3.4/prody/sequence/msaio.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-3.4/prody/sequence/msaio.o -L/usr/lib -lpython3.4m -o build/lib.linux-armv7l-3.4/prody/sequence/msaio.cpython-34m.so
building 'prody.sequence.seqtools' extension
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python3.4/site-packages/numpy/core/include -I/usr/include/python3.4m -c prody/sequence/seqtools.c -o build/temp.linux-armv7l-3.4/prody/sequence/seqtools.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-3.4/prody/sequence/seqtools.o -L/usr/lib -lpython3.4m -o build/lib.linux-armv7l-3.4/prody/sequence/seqtools.cpython-34m.so
building 'prody.kdtree._CKDTree' extension
creating build/temp.linux-armv7l-3.4/prody/kdtree
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python3.4/site-packages/numpy/core/include -I/usr/include/python3.4m -c prody/kdtree/KDTree.c -o build/temp.linux-armv7l-3.4/prody/kdtree/KDTree.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib/python3.4/site-packages/numpy/core/include -I/usr/include/python3.4m -c prody/kdtree/KDTreemodule.c -o build/temp.linux-armv7l-3.4/prody/kdtree/KDTreemodule.o
gcc -pthread -shared -Wl,-z,relro -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z,relro -Wl,-z,now build/temp.linux-armv7l-3.4/prody/kdtree/KDTree.o build/temp.linux-armv7l-3.4/prody/kdtree/KDTreemodule.o -L/usr/lib -lpython3.4m -o build/lib.linux-armv7l-3.4/prody/kdtree/_CKDTree.cpython-34m.so
running build_scripts
creating build/scripts-3.4
copying and adjusting scripts/prody -> build/scripts-3.4
copying and adjusting scripts/evol -> build/scripts-3.4
changing mode of build/scripts-3.4/prody from 644 to 755
changing mode of build/scripts-3.4/evol from 644 to 755
+ popd
~/build/BUILD/ProDy-1.7.1
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.D68onm
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm
++ dirname /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm
+ cd ProDy-1.7.1
~/build/BUILD/ProDy-1.7.1/python3 ~/build/BUILD/ProDy-1.7.1
+ pushd python3
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16  -mfloat-abi=hard'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm
running install
running install_lib
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
copying build/lib.linux-armv7l-3.4/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
copying build/lib.linux-armv7l-3.4/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps
copying build/lib.linux-armv7l-3.4/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-3.4/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-3.4/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble
copying build/lib.linux-armv7l-3.4/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble
copying build/lib.linux-armv7l-3.4/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble
copying build/lib.linux-armv7l-3.4/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble
copying build/lib.linux-armv7l-3.4/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble
copying build/lib.linux-armv7l-3.4/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
copying build/lib.linux-armv7l-3.4/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
copying build/lib.linux-armv7l-3.4/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
copying build/lib.linux-armv7l-3.4/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
copying build/lib.linux-armv7l-3.4/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
copying build/lib.linux-armv7l-3.4/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
copying build/lib.linux-armv7l-3.4/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
copying build/lib.linux-armv7l-3.4/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-3.4/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-3.4/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-3.4/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-3.4/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-3.4/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-3.4/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-3.4/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-3.4/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-3.4/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-3.4/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-3.4/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-3.4/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-3.4/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-3.4/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-3.4/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-3.4/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-3.4/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-3.4/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-3.4/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-3.4/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-3.4/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-3.4/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-3.4/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-3.4/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-3.4/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-3.4/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-3.4/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-3.4/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-3.4/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-3.4/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-3.4/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-3.4/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-3.4/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-3.4/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/kdtree
copying build/lib.linux-armv7l-3.4/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/kdtree
copying build/lib.linux-armv7l-3.4/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/kdtree
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/trajectory
copying build/lib.linux-armv7l-3.4/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/trajectory
copying build/lib.linux-armv7l-3.4/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/trajectory
copying build/lib.linux-armv7l-3.4/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/trajectory
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-3.4/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-3.4/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-3.4/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-3.4/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-3.4/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-3.4/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-3.4/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-3.4/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/database
copying build/lib.linux-armv7l-3.4/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/database
copying build/lib.linux-armv7l-3.4/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/database
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/seqtools.cpython-34m.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/msaio.cpython-34m.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/msatools.cpython-34m.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
copying build/lib.linux-armv7l-3.4/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/kdtree
copying build/lib.linux-armv7l-3.4/prody/kdtree/_CKDTree.cpython-34m.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/kdtree
copying build/lib.linux-armv7l-3.4/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/kdtree
copying build/lib.linux-armv7l-3.4/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/kdtree
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
copying build/lib.linux-armv7l-3.4/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
copying build/lib.linux-armv7l-3.4/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
copying build/lib.linux-armv7l-3.4/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
copying build/lib.linux-armv7l-3.4/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
copying build/lib.linux-armv7l-3.4/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
copying build/lib.linux-armv7l-3.4/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
copying build/lib.linux-armv7l-3.4/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/rtbtools.cpython-34m.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics
copying build/lib.linux-armv7l-3.4/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure
copying build/lib.linux-armv7l-3.4/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure
copying build/lib.linux-armv7l-3.4/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure
copying build/lib.linux-armv7l-3.4/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure
copying build/lib.linux-armv7l-3.4/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/pdbligands.py to pdbligands.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/compare.py to compare.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/localpdb.py to localpdb.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/functions.py to functions.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/stride.py to stride.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/header.py to header.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/dssp.py to dssp.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/proteins/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/residue.py to residue.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/segment.py to segment.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/pointer.py to pointer.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/atom.py to atom.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/functions.py to functions.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/atomic.py to atomic.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/fields.py to fields.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/hierview.py to hierview.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/subset.py to subset.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/bond.py to bond.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/selection.py to selection.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/atommap.py to atommap.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/flags.py to flags.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/select.py to select.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/chain.py to chain.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/apptools.py to apptools.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/apps/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble/conformation.py to conformation.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble/functions.py to functions.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/ensemble/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities/logger.py to logger.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities/pathtools.py to pathtools.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities/settings.py to settings.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities/doctools.py to doctools.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities/misctools.py to misctools.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/utilities/checkers.py to checkers.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/apps/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/database/pfam.py to pfam.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/database/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/msafile.py to msafile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/sequence.py to sequence.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/analysis.py to analysis.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/plotting.py to plotting.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/msa.py to msa.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/kdtree/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory/psffile.py to psffile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory/frame.py to frame.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/trajectory/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/sampling.py to sampling.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/compare.py to compare.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/gnm.py to gnm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/editing.py to editing.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/analysis.py to analysis.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/gamma.py to gamma.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/pca.py to pca.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/functions.py to functions.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/plotting.py to plotting.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/nma.py to nma.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/anm.py to anm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/mode.py to mode.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/rtb.py to rtb.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/modeset.py to modeset.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/exanm.py to exanm.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure/transform.py to transform.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure/measure.py to measure.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure/__init__.py to __init__.cpython-34.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/measure/contacts.py to contacts.cpython-34.pyc
writing byte-compilation script '/tmp/tmppbc16u__.py'
/usr/bin/python3 -O /tmp/tmppbc16u__.py
removing /tmp/tmppbc16u__.py
running install_scripts
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
copying build/scripts-3.4/prody -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
copying build/scripts-3.4/evol -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
changing mode of /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody to 755
changing mode of /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol to 755
running install_egg_info
Writing /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/ProDy-1.7-py3.4.egg-info
+ mv /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python3.4-prody
+ mv /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python3.4-evol
+ mkdir exe
+ cd exe
+ for i in prody-3 prody-3.4
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python3.4-prody prody-3
+ install -p prody-3 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python3.4-prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody-3
+ for i in prody-3 prody-3.4
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python3.4-prody prody-3.4
+ install -p prody-3.4 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python3.4-prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody-3.4
+ for i in evol-3 evol-3.4
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python3.4-evol evol-3
+ install -p evol-3 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python3.4-evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol-3
+ for i in evol-3 evol-3.4
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python3.4-evol evol-3.4
+ install -p evol-3.4 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python3.4-evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol-3.4
+ cd ..
~/build/BUILD/ProDy-1.7.1
~/build/BUILD/ProDy-1.7.1/python2 ~/build/BUILD/ProDy-1.7.1
+ popd
+ pushd python2
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16  -mfloat-abi=hard'
+ /usr/bin/python2 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm
running install
running install_lib
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
copying build/lib.linux-armv7l-2.7/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
copying build/lib.linux-armv7l-2.7/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps
copying build/lib.linux-armv7l-2.7/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
copying build/lib.linux-armv7l-2.7/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps
copying build/lib.linux-armv7l-2.7/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble
copying build/lib.linux-armv7l-2.7/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble
copying build/lib.linux-armv7l-2.7/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble
copying build/lib.linux-armv7l-2.7/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble
copying build/lib.linux-armv7l-2.7/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble
copying build/lib.linux-armv7l-2.7/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
copying build/lib.linux-armv7l-2.7/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
copying build/lib.linux-armv7l-2.7/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
copying build/lib.linux-armv7l-2.7/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
copying build/lib.linux-armv7l-2.7/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
copying build/lib.linux-armv7l-2.7/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
copying build/lib.linux-armv7l-2.7/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
copying build/lib.linux-armv7l-2.7/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-2.7/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-2.7/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-2.7/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-2.7/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-2.7/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins
copying build/lib.linux-armv7l-2.7/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-2.7/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-2.7/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-2.7/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-2.7/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-2.7/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-2.7/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
copying build/lib.linux-armv7l-2.7/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-2.7/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-2.7/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-2.7/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-2.7/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-2.7/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps
copying build/lib.linux-armv7l-2.7/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-2.7/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-2.7/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-2.7/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-2.7/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble
copying build/lib.linux-armv7l-2.7/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
copying build/lib.linux-armv7l-2.7/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-2.7/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-2.7/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-2.7/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities
copying build/lib.linux-armv7l-2.7/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-2.7/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-2.7/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-2.7/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-2.7/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence
copying build/lib.linux-armv7l-2.7/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/kdtree
copying build/lib.linux-armv7l-2.7/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/kdtree
copying build/lib.linux-armv7l-2.7/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/kdtree
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/trajectory
copying build/lib.linux-armv7l-2.7/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/trajectory
copying build/lib.linux-armv7l-2.7/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/trajectory
copying build/lib.linux-armv7l-2.7/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/trajectory
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-2.7/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-2.7/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-2.7/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/dynamics
copying build/lib.linux-armv7l-2.7/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-2.7/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-2.7/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-2.7/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure
copying build/lib.linux-armv7l-2.7/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/database
copying build/lib.linux-armv7l-2.7/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/database
copying build/lib.linux-armv7l-2.7/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/database
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/msatools.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/seqtools.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/msaio.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
copying build/lib.linux-armv7l-2.7/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/kdtree
copying build/lib.linux-armv7l-2.7/prody/kdtree/_CKDTree.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/kdtree
copying build/lib.linux-armv7l-2.7/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/kdtree
copying build/lib.linux-armv7l-2.7/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/kdtree
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
copying build/lib.linux-armv7l-2.7/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
copying build/lib.linux-armv7l-2.7/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
copying build/lib.linux-armv7l-2.7/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
copying build/lib.linux-armv7l-2.7/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
copying build/lib.linux-armv7l-2.7/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
copying build/lib.linux-armv7l-2.7/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
copying build/lib.linux-armv7l-2.7/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/rtbtools.so -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics
copying build/lib.linux-armv7l-2.7/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody
creating /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure
copying build/lib.linux-armv7l-2.7/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure
copying build/lib.linux-armv7l-2.7/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure
copying build/lib.linux-armv7l-2.7/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure
copying build/lib.linux-armv7l-2.7/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/pdbligands.py to pdbligands.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/compare.py to compare.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/localpdb.py to localpdb.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/functions.py to functions.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/blastpdb.py to blastpdb.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/wwpdb.py to wwpdb.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/pdbfile.py to pdbfile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/stride.py to stride.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/pdbclusters.py to pdbclusters.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/header.py to header.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/dssp.py to dssp.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/proteins/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/residue.py to residue.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/segment.py to segment.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/pointer.py to pointer.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/atom.py to atom.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/functions.py to functions.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/atomic.py to atomic.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/fields.py to fields.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/hierview.py to hierview.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/subset.py to subset.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/bond.py to bond.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/selection.py to selection.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/atommap.py to atommap.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/flags.py to flags.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/select.py to select.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/chain.py to chain.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/atomic/atomgroup.py to atomgroup.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/apptools.py to apptools.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/apps/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble/conformation.py to conformation.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble/functions.py to functions.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble/ensemble.py to ensemble.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/ensemble/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities/logger.py to logger.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities/pathtools.py to pathtools.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities/settings.py to settings.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities/doctools.py to doctools.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities/misctools.py to misctools.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/utilities/checkers.py to checkers.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins/test_header.py to test_header.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/proteins/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic/test_subset.py to test_subset.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic/test_select.py to test_select.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/atomic/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/apps/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble/test_functions.py to test_functions.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/ensemble/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/datafiles/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/utilities/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence/test_msa.py to test_msa.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/sequence/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/kdtree/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/trajectory/test_frame.py to test_frame.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/trajectory/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/dynamics/test_editing.py to test_editing.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/dynamics/test_enms.py to test_enms.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/dynamics/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure/test_transform.py to test_transform.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure/test_measure.py to test_measure.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests/measure/test_contacts.py to test_contacts.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/database/pfam.py to pfam.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/database/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/msafile.py to msafile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/sequence.py to sequence.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/analysis.py to analysis.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/plotting.py to plotting.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/msa.py to msa.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/kdtree/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/kdtree/kdtree.py to kdtree.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory/trajfile.py to trajfile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory/trajectory.py to trajectory.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory/dcdfile.py to dcdfile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory/psffile.py to psffile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory/frame.py to frame.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory/trajbase.py to trajbase.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/trajectory/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/sampling.py to sampling.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/compare.py to compare.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/gnm.py to gnm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/bbenm.py to bbenm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/editing.py to editing.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/analysis.py to analysis.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/gamma.py to gamma.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/pca.py to pca.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/functions.py to functions.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/plotting.py to plotting.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/nmdfile.py to nmdfile.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/nma.py to nma.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/anm.py to anm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/mode.py to mode.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/rtb.py to rtb.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/heatmapper.py to heatmapper.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/modeset.py to modeset.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/exanm.py to exanm.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure/transform.py to transform.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure/measure.py to measure.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/measure/contacts.py to contacts.pyc
writing byte-compilation script '/tmp/tmp7SOpwF.py'
/usr/bin/python2 -O /tmp/tmp7SOpwF.py
removing /tmp/tmp7SOpwF.py
running install_scripts
copying build/scripts-2.7/prody -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
copying build/scripts-2.7/evol -> /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
changing mode of /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody to 755
changing mode of /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol to 755
running install_egg_info
Writing /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/ProDy-1.7-py2.7.egg-info
+ cp -p /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-prody
+ cp -p /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-evol
+ mkdir exe
+ pushd exe
~/build/BUILD/ProDy-1.7.1/python2/exe ~/build/BUILD/ProDy-1.7.1/python2 ~/build/BUILD/ProDy-1.7.1
+ for i in prody prody-2 prody-2.7
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-prody prody
+ install -p prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python2.7-prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody
+ for i in prody prody-2 prody-2.7
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-prody prody-2
+ install -p prody-2 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python2.7-prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody-2
+ for i in prody prody-2 prody-2.7
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-prody prody-2.7
+ install -p prody-2.7 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python2.7-prody /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/prody-2.7
+ for i in evol evol-2 evol-2.7
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-evol evol
+ install -p evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python2.7-evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol
+ for i in evol evol-2 evol-2.7
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-evol evol-2
+ install -p evol-2 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python2.7-evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol-2
+ for i in evol evol-2 evol-2.7
+ touch -r /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/python2.7-evol evol-2.7
+ install -p evol-2.7 /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin
+ ln -sf /usr/bin/python2.7-evol /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/bin/evol-2.7
+ popd
~/build/BUILD/ProDy-1.7.1/python2 ~/build/BUILD/ProDy-1.7.1
~/build/BUILD/ProDy-1.7.1
+ popd
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/ProDy-1.7.1
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/msatools.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/seqtools.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/sequence/msaio.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/kdtree/_CKDTree.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/dynamics/rtbtools.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/seqtools.cpython-34m.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/msaio.cpython-34m.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/sequence/msatools.cpython-34m.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/kdtree/_CKDTree.cpython-34m.so
extracting debug info from /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/dynamics/rtbtools.cpython-34m.so
/usr/lib/rpm/sepdebugcrcfix: Updated 10 CRC32s, 0 CRC32s did match.
628 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/debug/usr/lib/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/debug/usr/lib/python3.4 using /usr/bin/python3.4
Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4 using /usr/bin/python3.4
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.r9d3tr
+ umask 022
~/build/BUILD/ProDy-1.7.1/python2/build/scripts-2.7 ~/build/BUILD/ProDy-1.7.1
+ cd /builddir/build/BUILD
+ cd ProDy-1.7.1
+ pushd python2/build/scripts-2.7
+ PYTHONPATH=/builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages
+ nosetests -v -e test_wwpdb.py -e test_enms.py -e test_localpdb.py -w /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python2.7/site-packages/prody/tests --tests prody -a '!slow'
testAtomGroup (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testAtomMap (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testChain (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testResidue (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testSelection (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
TestCopyAtom (prody.tests.atomic.test_atomic.TestCopying) ... ok
TestCopyAtomGroup (prody.tests.atomic.test_atomic.TestCopying) ... ok
TestCopyChain (prody.tests.atomic.test_atomic.TestCopying) ... ok
TestCopySelstr (prody.tests.atomic.test_atomic.TestCopying) ... ok
testAtom (prody.tests.atomic.test_atomic.TestPickling) ... ok
testAtomGroup (prody.tests.atomic.test_atomic.TestPickling) ... ok
testSelection (prody.tests.atomic.test_atomic.TestPickling) ... ok
testSaveLoad (prody.tests.atomic.test_atomic.TestSaveLoad) ... ok
testInstantiation (prody.tests.atomic.test_atommap.TestInstantiation) ... ok
testAllSelection (prody.tests.atomic.test_atommap.TestSelection) ... ok
testChainSelection (prody.tests.atomic.test_atommap.TestSelection) ... ok
testGetBoolArray (prody.tests.atomic.test_atommap.TestSelection) ... ok
testNameSelection (prody.tests.atomic.test_atommap.TestSelection) ... ok
testSplit (prody.tests.atomic.test_fragment.TestFragment) ... ok
testSplitCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testSplitNoh (prody.tests.atomic.test_fragment.TestFragment) ... ok
testSplitNohCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWhole (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWhole2 (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeAll (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeNoh (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeNohCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testCA (prody.tests.atomic.test_hierview.TestShuffled) ... ok
testProtein (prody.tests.atomic.test_hierview.TestShuffled) ... ok
testNumResidues (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
testResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
testSelectionResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
testSelectionResidueIndexing2 (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
Test macro *cacb*: 'name CA CB' ... ok
Test macro *donors*: '(protein) and (name N NE NH2 ND2 NE2 ND1 OG OH NH1 SG OG1 NE2 NZ NE1 ND1 NE2)' ... ok
testMacroFunctions (prody.tests.atomic.test_select.TestMacros) ... ok
Test bondedto selections 'bonded to index 0' for imatinib ... ok
Test bondedto selections 'bonded 0 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 3 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok
Test bondedto selections 'exbonded 1 to index 0' for imatinib ... ok
Test bondedto selections 'exbonded 2 to index 0' for imatinib ... ok
Test bondedto selections 'exbonded 3 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 20 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 20 to index 10' for imatinib ... ok
Test bondedto selections 'exbonded to index 0' for imatinib ... ok
Test bondedto selections 'bonded to index 1000' for imatinib ... ok
Test bondedto selections 'fragment 0' for imatinib ... ok
Test bondedto selections 'fragment 1' for imatinib ... ok
Test bondedto selections 'fragment 0 1 2' for imatinib ... ok
Test bondedto selections 'fragindex 0 1 2' for imatinib ... ok
Test bondedto selections 'fragindex 0:2' for imatinib ... ok
Test bondedto selections 'bonded to index 67' for imatinib ... ok
Test bondedto selections 'exbonded to index 67' for imatinib ... ok
Test bondedto selections 'bonded 2 to index 0' for imatinib ... ok
Test comparisons selections 'x = -51.659' for pdb3mht ... ok
Test comparisons selections 'beta < 10' for pdb3mht ... ok
Test comparisons selections 'occupancy > 0.999999' for pdb3mht ... ok
Test comparisons selections '-10 <= x < 0' for pdb3mht ... ok
Test comparisons selections '11 > 10' for pdb3mht ... ok
Test comparisons selections 'radius > 10' for pdb3mht ... ok
Test comparisons selections 'chain = A' for pdb3mht ... ok
Test comparisons selections 'x x < 1' for pdb3mht ... ok
Test comparisons selections 'name < 1' for pdb3mht ... ok
Test comparisons selections 'x != -51.659' for pdb3mht ... ok
Test comparisons selections 'z >= 82.813' for pdb3mht ... ok
Test comparisons selections 'z < 82.813' for pdb3mht ... ok
Test comparisons selections 'beta > 10' for pdb3mht ... ok
Test composite selections 'chain x y z C and x 10' for pdb3mht ... ok
Test composite selections 'backbone and sqrt((x - 25)**2 + (y - 74)**2 + (z - 13)**2) <= 500' for pdb3mht ... ok
Test composite selections '(not resname SAH) and (protein and name CA) or (nucleic and name P)' for pdb3mht ... ok
Test composite selections 'protein and (backbone or name H)' for pdb3mht ... ok
Test composite selections 'same residue as within 4 of and resname SAH' for pdb3mht ... ok
Test composite selections 'protein and name CA CB and same residue as ((x+21.2)**2 + (y-35.9)**2 + (z-80.0)**2)**0.5 < 10' for pdb3mht ... ok
Test composite selections 'resnum `1` `2`' for pdb3mht ... ok
Test composite selections 'same residue as within 4 of resname SAH' for pdb3mht ... ok
Test composite selections 'name CA and same residue as within 4 of resname SAH' for pdb3mht ... ok
Test composite selections 'water and within 5 of not protein' for pdb3mht ... ok
Test docexamples selections 'serial 1 2 3' for pdb3mht ... ok
Test docexamples selections 'beta 1 to 500' for pdb3mht ... ok
Test docexamples selections 'beta 1:500' for pdb3mht ... ok
Test docexamples selections 'beta < 500' for pdb3mht ... ok
Test docexamples selections 'resnum 120A 120B' for pdb3mht ... ok
Test docexamples selections 'icode A' for pdb3mht ... ok
Test docexamples selections 'icode _' for pdb3mht ... ok
Test docexamples selections 'charge 1' for pdb3mht ... ok
Test docexamples selections 'abs(charge) == 1' for pdb3mht ... ok
Test docexamples selections 'charge < 0' for pdb3mht ... ok
Test docexamples selections '0 < mass < 500' for pdb3mht ... ok
Test docexamples selections 'serial 1 to 10' for pdb3mht ... ok
Test docexamples selections 'abs(mass) <= mass <= 10' for pdb3mht ... ok
Test docexamples selections 'serial 1:10:2' for pdb3mht ... ok
Test docexamples selections 'serial < 10' for pdb3mht ... ok
Test docexamples selections 'beta 555.55' for pdb3mht ... ok
Test equivalent selections 'chain C' for pdb3mht ... ok
Test equivalent selections 'chain C' for pdb3mht ... ok
Test equivalent selections 'nucleic' for pdb3mht ... ok
Test flags selections 'none' for pdb3mht ... ok
Test flags selections 'bend' for pdb3mht ... ok
Test flags selections 'coil' for pdb3mht ... ok
Test flags selections 'aromatic' for pdb3mht ... ok
Test flags selections 'at' for pdb3mht ... ok
Test flags selections 'basic' for pdb3mht ... ok
Test flags selections 'buried' for pdb3mht ... ok
Test flags selections 'cg' for pdb3mht ... ok
Test flags selections 'charged' for pdb3mht ... ok
Test flags selections 'cyclic' for pdb3mht ... ok
Test flags selections 'heme' for pdb3mht ... ok
Test flags selections 'hydrophobic' for pdb3mht ... ok
Test flags selections 'ion' for pdb3mht ... ok
Test flags selections 'all' for pdb3mht ... ok
Test flags selections 'large' for pdb3mht ... ok
Test flags selections 'lipid' for pdb3mht ... ok
Test flags selections 'medium' for pdb3mht ... ok
Test flags selections 'neutral' for pdb3mht ... ok
Test flags selections 'nucleic' for pdb3mht ... ok
Test flags selections 'nucleotide' for pdb3mht ... ok
Test flags selections 'nucleobase' for pdb3mht ... ok
Test flags selections 'nucleoside' for pdb3mht ... ok
Test flags selections 'polar' for pdb3mht ... ok
Test flags selections 'protein' for pdb3mht ... ok
Test flags selections 'acidic' for pdb3mht ... ok
Test flags selections 'stdaa' for pdb3mht ... ok
Test flags selections 'nonstdaa' for pdb3mht ... ok
Test flags selections 'purine' for pdb3mht ... ok
Test flags selections 'pyrimidine' for pdb3mht ... ok
Test flags selections 'small' for pdb3mht ... ok
Test flags selections 'sugar' for pdb3mht ... ok
Test flags selections 'surface' for pdb3mht ... ok
Test flags selections 'water' for pdb3mht ... ok
Test flags selections 'hetero' for pdb3mht ... ok
Test flags selections 'hetatm' for pdb3mht ... ok
Test flags selections 'acyclic' for pdb3mht ... ok
Test flags selections 'calpha' for pdb3mht ... ok
Test flags selections 'backbone' for pdb3mht ... ok
Test flags selections 'backbonefull' for pdb3mht ... ok
Test flags selections 'sidechain' for pdb3mht ... ok
Test flags selections 'carbon' for pdb3mht ... ok
Test flags selections 'hydrogen' for pdb3mht ... ok
Test flags selections 'noh' for pdb3mht ... ok
Test flags selections 'nitrogen' for pdb3mht ... ok
Test flags selections 'oxygen' for pdb3mht ... ok
Test flags selections 'sulfur' for pdb3mht ... ok
Test flags selections 'aliphatic' for pdb3mht ... ok
Test flags selections 'extended' for pdb3mht ... ok
Test flags selections 'helix' for pdb3mht ... ok
Test flags selections 'helix310' for pdb3mht ... ok
Test flags selections 'turn' for pdb3mht ... ok
Test flags selections 'bridge' for pdb3mht ... ok
Test float selections 'beta 5.0 41.15 11.85' for pdb3mht ... ok
Test float selections 'charge 0' for pdb3mht ... ok
Test float selections 'mass 1' for pdb3mht ... ok
Test float selections 'radius 0' for pdb3mht ... ok
Test float selections 'beta "1."' for pdb3mht ... ok
Test float selections 'beta = "1."' for pdb3mht ... ok
Test float selections 'occupancy 1.0' for pdb3mht ... ok
Test float selections 'x 6.665' for pdb3mht ... ok
Test float selections 'y 69.99 13.314' for pdb3mht ... ok
Test float selections 'z 115.246 45.784' for pdb3mht ... ok
Test function selections 'sqrt(x**2 + y**2 + z**2) < 100' for pdb3mht ... ok
Test function selections 'floor(beta) == 10' for pdb3mht ... ok
Test function selections 'abs(x) == sqrt(sq(x))' for pdb3mht ... ok
Test function selections 'sq(x-5)+sq(y+4)+sq(z) > sq(100)' for pdb3mht ... ok
Test function selections '1 > sq(occ)' for pdb3mht ... ok
Test function selections 'sq(x x) > 1' for pdb3mht ... ok
Test function selections 'sqrt(x**2 + y**2 + z**2) == (x**2 + y**2 + z**2) ** 0.5' for pdb3mht ... ok
Test function selections 'beta % 3 < 1' for pdb3mht ... ok
Test function selections 'beta % 4 % 3 < 1' for pdb3mht ... ok
Test function selections 'ceil(beta) == 10' for pdb3mht ... ok
Test integer selections 'index 10 20 10000' for pdb3mht ... ok
Test integer selections 'resid 0' for pdb3mht ... ok
Test integer selections 'resid 100 105' for pdb3mht ... ok
Test integer selections 'resid 100 A 105' for pdb3mht ... ok
Test integer selections 'fragindex 0' for pdb3mht ... ok
Test integer selections 'fragment 0' for pdb3mht ... ok
Test integer selections 'serial 0' for pdb3mht ... ok
Test integer selections 'serial 1 2' for pdb3mht ... ok
Test integer selections 'resnum 0' for pdb3mht ... ok
Test integer selections 'resnum 100 105' for pdb3mht ... ok
Test invalid selections 'chain C and and chain C' for pdb3mht ... ok
Test invalid selections 'x > sq(calpha)' for pdb3mht ... ok
Test invalid selections 'x > sq(name CA and resname ALA)' for pdb3mht ... ok
Test invalid selections 'resname ALA and +1' for pdb3mht ... ok
Test invalid selections 'chain C or or chain D' for pdb3mht ... ok
Test invalid selections 'chain C or not or chain D' for pdb3mht ... ok
Test invalid selections 'chain C + 3' for pdb3mht ... ok
Test invalid selections 'sqr(x-5)+sqr(y+4)+sqr(z) > sqr(100)' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of none' for pdb3mht ... ok
Test logical selections 'name or name' for pdb3mht ... ok
Test logical selections 'not not not not index 1' for pdb3mht ... ok
Test logical selections 'index 0 or index 1 or index 2' for pdb3mht ... ok
Test logical selections 'index 0 or index 1 or index 2 or index 4' for pdb3mht ... ok
Test logical selections 'index 0 and index 1 ' for pdb3mht ... ok
Test logical selections 'index < 50 and index < 5' for pdb3mht ... ok
Test logical selections 'index < 50 and index < 25 and index < 5' for pdb3mht ... ok
Test logical selections 'index < 5 and index < 25 and index < 50' for pdb3mht ... ok
Test logical selections 'index 0 to 5 and index 0 to 25 and index 0 to 50' for pdb3mht ... ok
Test logical selections 'index < 5 and index < 25 and index < 50 or index < 50 or index < 5' for pdb3mht ... ok
Test logical selections 'name and name' for pdb3mht ... ok
Test logical selections 'name CA and name CA' for pdb3mht ... ok
Test logical selections 'name CA or name CA' for pdb3mht ... ok
Test logical selections 'index 0 or index 1 ' for pdb3mht ... ok
Test operation selections 'x ** 2 < 10' for pdb3mht ... ok
Test operation selections 'x ** 2 ** 2 ** 2 < 10' for pdb3mht ... ok
Test operation selections 'x ** (+2 ** (+2 ** +2)) < 10' for pdb3mht ... ok
Test operation selections 'occupancy % 2 == 1' for pdb3mht ... ok
Test operation selections 'x**2 + y**2 + z**2 < 10000' for pdb3mht ... ok
Test range selections 'index 0:10' for pdb3mht ... ok
Test range selections 'resnum 10:16:1' for pdb3mht ... ok
Test range selections 'resnum `-3:16:1`' for pdb3mht ... ok
Test range selections 'resid 10to15' for pdb3mht ... ok
Test range selections 'resid 10:16:1' for pdb3mht ... ok
Test range selections 'x `-10:20`' for pdb3mht ... ok
Test range selections 'x 0:20:1' for pdb3mht ... ok
Test range selections 'beta 13.02:13.01' for pdb3mht ... ok
Test range selections 'index 0to10' for pdb3mht ... ok
Test range selections 'serial 0:10:2' for pdb3mht ... ok
Test range selections 'serial 0:10:10' for pdb3mht ... ok
Test range selections 'resnum 10to15' for pdb3mht ... ok
Test regexp selections 'resname "S.."' for pdb3mht ... ok
Test regexp selections 'name "C.*"' for pdb3mht ... ok
Test regexp selections 'name ".*\'"' for pdb3mht ... ok
Test regexp selections 'name "C(A|B)"' for pdb3mht ... ok
Test regexp selections 'name "C((A|B)"' for pdb3mht ... ok
Test sameas selections 'same residue as index 0' for pdb3mht ... ok
Test sameas selections 'same residue as chain X' for pdb3mht ... ok
Test sameas selections 'same none as chain C' for pdb3mht ... ok
Test sameas selections 'same residue as same residue as same residue as index 0' for pdb3mht ... ok
Test sameas selections 'same chain as index 0' for pdb3mht ... ok
Test sameas selections 'same segment as index 0' for pdb3mht ... ok
Test sameas selections 'same residue as resname DG ALA' for pdb3mht ... ok
Test sameas selections 'same chain as chain C' for pdb3mht ... ok
Test sequence selections 'sequence al' for pdb3mht ... ok
Test sequence selections 'sequence "SS."' for pdb3mht ... ok
Test sequence selections 'sequence "S[A-Z]{2}G"' for pdb3mht ... ok
Test sequence selections 'sequence "S.S.S"' for pdb3mht ... ok
Test sequence selections 'sequence "."' for pdb3mht ... ok
Test sequence selections 'sequence A' for pdb3mht ... ok
Test sequence selections 'sequence MIEIK' for pdb3mht ... ok
Test sequence selections 'sequence VLNAL' for pdb3mht ... ok
Test sequence selections 'sequence FKPY' for pdb3mht ... ok
Test specialchar selections 'altloc ` `' for pdb3mht ... ok
Test specialchar selections 'name A` `CA`' for pdb3mht ... ok
Test specialchar selections 'name `A``' for pdb3mht ... ok
Test specialchar selections 'z `+100.291`' for pdb3mht ... ok
Test string selections 'name P' for pdb3mht ... ok
Test string selections 'chain x y' for pdb3mht ... ok
Test string selections 'chain x y z' for pdb3mht ... ok
Test string selections 'chain x y z C' for pdb3mht ... ok
Test string selections 'chain C D' for pdb3mht ... ok
Test string selections 'chain CD' for pdb3mht ... ok
Test string selections 'resname DG' for pdb3mht ... ok
Test string selections 'resname DG ALA' for pdb3mht ... ok
Test string selections 'altloc A' for pdb3mht ... ok
Test string selections 'altloc _' for pdb3mht ... ok
Test string selections 'secondary H' for pdb3mht ... ok
Test string selections 'name P CA' for pdb3mht ... ok
Test string selections 'secondary H E' for pdb3mht ... ok
Test string selections 'secondary _' for pdb3mht ... ok
Test string selections 'segment _' for pdb3mht ... ok
Test string selections 'name `A 1`' for pdb3mht ... ok
Test string selections 'chain C' for pdb3mht ... ok
Test string selections 'chain x' for pdb3mht ... ok
Test synonyms selections 'chain C' for pdb3mht ... ok
Test synonyms selections 'chain C D' for pdb3mht ... ok
Test unintended selections 'abs beta = beta' for pdb3mht ... ok
Test userdata selections 'temp < 10' for pdb3mht ... ok
Test userdata selections 'occ and occupancy == 1' for pdb3mht ... ok
Test userdata selections 'occ and occupancy == 1 and oc10 - 9 == 1' for pdb3mht ... ok
Test userdata selections 'occ and occupancy == 1 and temp < 10' for pdb3mht ... ok
Test userdata selections 'occ > 0' for pdb3mht ... ok
Test userdata selections 'temp < 10 and chain D' for pdb3mht ... ok
Test userdata selections 'oc10 - 9 == 1' for pdb3mht ... ok
Test userdata selections 'temp < 10' for pdb3mht ... ok
Test userdata selections 'occ' for pdb3mht ... ok
Test within selections 'within 10 of index 0' for pdb3mht ... ok
Test within selections 'exwithin 5 of exwithin 5 of exwithin 5 of index 0' for pdb3mht ... ok
Test within selections 'within 1 of pdb' for pdb3mht ... ok
Test within selections 'exwithin 1 of pdb' for pdb3mht ... ok
Test within selections 'exwithin 1 of ag' for pdb3mht ... ok
Test within selections 'within 100 of index 10000' for pdb3mht ... ok
Test within selections 'exwithin 100 of index 0' for pdb3mht ... ok
Test within selections 'exwithin 4 of resname SAH' for pdb3mht ... ok
Test within selections '(within 4 of water) and not water' for pdb3mht ... ok
Test within selections 'within 5 of within 5 of within 5 of index 0' for pdb3mht ... ok
Test without_and selections 'coil protein' for pdb3mht ... ok
Test without_and selections 'noh hetero water' for pdb3mht ... ok
Test without_and selections 'ca occupancy > 0' for pdb3mht ... ok
Test without_and selections 'ca occupancy - 0 > 0' for pdb3mht ... ok
Test without_and selections 'ca occupancy - 0 > 0 + 0' for pdb3mht ... ok
Test without_and selections 'occupancy > ca 0' for pdb3mht ... ok
Test without_and selections 'noh hetero (water)' for pdb3mht ... ok
Test without_and selections 'noh hetero not (water)' for pdb3mht ... ok
Test without_and selections '(water) hetero' for pdb3mht ... ok
Test without_and selections 'ca abs(beta) = beta + abs(0)' for pdb3mht ... ok
Test without_and selections 'sidechain sc protein' for pdb3mht ... ok
Test without_and selections 'bbfull bb' for pdb3mht ... ok
Test without_and selections '(charged basic)' for pdb3mht ... ok
Test without_and selections '(protein nucleic)' for pdb3mht ... ok
prody.tests.atomic.test_select.testGetBoolArray ... ok
testSetData (prody.tests.atomic.test_subset.TestUserData) ... ok
testMode1d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testMode3d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testModel1d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testModel3d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testVector1d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testVector3d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testCoordinates (prody.tests.ensemble.test_conformation.TestConformation) ... ok
testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestConformation) ... ok
Test get index function. ... ok
Test get index function. ... ok
testWeights (prody.tests.ensemble.test_conformation.TestConformation) ... ok
testCoordinates (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testGetIndex (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testGetNumAtoms (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testWeights (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testWeightsForAll (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
Test concatenation of ensembles without weights. ... ok
Test concatenation of ensembles without and with weights. ... ok
Test concatenation of ensembles with weights. ... ok
Test concatenation of ensembles with and without weights. ... ok
testDelCoordsetAll (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testDelCoordsetMiddle (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
Test correctness of reference coordinates. ... ok
Test correctness of all coordinates. ... ok
testGetNumAtoms (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testGetNumCsets (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testGetRMSDs (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testGetRMSDsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
Test correctness of all weights. ... ok
Test coordinate iteration. ... ok
Test slicing operation. ... ok
Test making a copy by slicing operation. ... ok
Test slicing with a list. ... ok
Test slicing operation with weights. ... ok
testSuperpose (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testSuperposeWeights (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testInvalidType (prody.tests.ensemble.test_functions.TestCalcOccupancies) ... ok
testResults (prody.tests.ensemble.test_functions.TestCalcOccupancies) ... ok
testWeightsNone (prody.tests.ensemble.test_functions.TestCalcOccupancies) ... ok
Test concatenation of PDB ensembles. ... ok
Test consequences of deleting all coordinate sets. ... ok
testDelCoordsetMiddle (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetCoordinates (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetNumAtoms (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetNumCsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testIterCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicing (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicingCopy (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicingList (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicingWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testAllSearch (prody.tests.kdtree.test_kdtree.TestKDTree) ... ok
testSearch (prody.tests.kdtree.test_kdtree.TestKDTree) ... ok
testPairNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testPairPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testPointNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testPointPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testMINvsMAX (prody.tests.measure.test_contacts.TestContacts) ... ok
testPBCvsNONE (prody.tests.measure.test_contacts.TestContacts) ... ok
testAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testNoPBC (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testPBC (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testPBCAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testPBCCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testCenter (prody.tests.measure.test_measure.TestCenter) ... ok
testCenterWithWeights (prody.tests.measure.test_measure.TestCenter) ... ok
testMultiCoordsets (prody.tests.measure.test_measure.TestCenter) ... ok
testMultiCoordsetsWithWeights (prody.tests.measure.test_measure.TestCenter) ... ok
testCTerPhi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testCTerPsi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testCalcPhi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testCalcPsi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testNTerPhi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testNTerPsi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testPBC (prody.tests.measure.test_measure.TestDistances) ... ok
testPBCSymmetry (prody.tests.measure.test_measure.TestDistances) ... ok
testMSF (prody.tests.measure.test_measure.TestMSF) ... ok
testMSFfloat (prody.tests.measure.test_measure.TestMSF) ... ok
testByArgument (prody.tests.measure.test_transform.TestMoveAtoms) ... ok
testToArgument (prody.tests.measure.test_transform.TestMoveAtoms) ... ok
testTransformation (prody.tests.measure.test_transform.TestMoveAtoms) ... ok
testWrap (prody.tests.measure.test_transform.TestWrapAtoms) ... ok
testHeaderContent (prody.tests.proteins.test_header.TestParsePDBHeaderOnly) ... ok
testHeaderType (prody.tests.proteins.test_header.TestParsePDBHeaderOnly) ... ok
Test number of coordinate sets when using *ag* arguments. ... ok
Test number of coordinate sets when using *ag* arguments. ... ok
Test outcome of valid and invalid *ag* arguments. ... ok
testBiomolArgument (prody.tests.proteins.test_pdbfile.TestParsePDB) ... ok
Test outcome of valid and invalid *chain* arguments. ... ok
Test outcome of valid and invalid *model* arguments. ... ok
Test outcome of invalid *pdb* arguments. ... ok
testSecondaryArgument (prody.tests.proteins.test_pdbfile.TestParsePDB) ... ok
Test outcome of valid and invalid *subset* arguments. ... ok
Test outcome of *title* argument. ... ok
Test the outcome of a simple parsing scenario. ... ok
testAltlocA (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAltlocB (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAltlocC (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAltlocNone (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAtomGroupContent (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels) ... ok
testAtomGroupType (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels) ... ok
testResidueCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testResidueOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testSequenceCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testSequenceOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testMATLAB (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testZero1 (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testZero2 (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testInf (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testNorm (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testNorm2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testSixSequences (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testFourSequences (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testInf (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testZero (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testMATLAB (prody.tests.sequence.test_analysis.TestCalcSCA) ... ok
testZero (prody.tests.sequence.test_analysis.TestCalcSCA) ... ok
testAmbiguous (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testGapDividend (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testSixSequences (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testSmallProbability (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testMATLAB10 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testMATLAB8 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero1 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero2 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero3 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero4 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testIdentityMatrix (prody.tests.sequence.test_analysis.TestIdentity) ... ok
testIdentityMatrixNonTurbo (prody.tests.sequence.test_analysis.TestIdentity) ... ok
testUnique (prody.tests.sequence.test_analysis.TestUnique) ... ok
testUnique2 (prody.tests.sequence.test_analysis.TestUnique) ... ok
testMerge (prody.tests.sequence.test_msa.TestMerging) ... ok
testAll (prody.tests.sequence.test_msa.TestRefinement) ... ok
testColocc (prody.tests.sequence.test_msa.TestRefinement) ... ok
testLabel (prody.tests.sequence.test_msa.TestRefinement) ... ok
testRowCol (prody.tests.sequence.test_msa.TestRefinement) ... ok
testRowocc (prody.tests.sequence.test_msa.TestRefinement) ... ok
testSeqid (prody.tests.sequence.test_msa.TestRefinement) ... ok
testSeqidLabel (prody.tests.sequence.test_msa.TestRefinement) ... ok
testMSAFile (prody.tests.sequence.test_msafile.TestMSAFile) ... ok
testWriteFasta (prody.tests.sequence.test_msafile.TestMSAFile) ... ok
testWriteSelex (prody.tests.sequence.test_msafile.TestMSAFile) ... ok
testWriteStockholm (prody.tests.sequence.test_msafile.TestMSAFile) ... ok
testArray (prody.tests.sequence.test_msafile.TestParseMSA) ... ok
testIterator (prody.tests.sequence.test_msafile.TestParseMSA) ... ok
testMapping (prody.tests.sequence.test_msafile.TestParseMSA) ... ok
testFasta (prody.tests.sequence.test_msafile.TestWriteMSA) ... ok
testSelex (prody.tests.sequence.test_msafile.TestWriteMSA) ... ok
testStringConversion (prody.tests.sequence.test_sequence.TestSequence) ... ok
testParseDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testWrite (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testWriteDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testWriteModeAppend (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testAll (prody.tests.trajectory.test_frame.TestSuperpose) ... ok
testCarbon (prody.tests.trajectory.test_frame.TestSuperpose) ... ok
testCoords (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testCoordset (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testCoordsetNatoms (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testInvalidCoords (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testCorrectMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testCorrectMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testCorrectMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testWrongMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testWrongMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testWrongMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testContinuous (prody.tests.utilities.test_misctools.TestRangeString) ... ok
testGapped (prody.tests.utilities.test_misctools.TestRangeString) ... ok
testNegative (prody.tests.utilities.test_misctools.TestRangeString) ... ok
testRepeated (prody.tests.utilities.test_misctools.TestRangeString) ... ok
testBuffer (prody.tests.utilities.test_pathtools.TestGunzip) ... ok
testFile (prody.tests.utilities.test_pathtools.TestGunzip) ... ok
----------------------------------------------------------------------
Ran 508 tests in 12.626s
OK
+ popd
~/build/BUILD/ProDy-1.7.1
~/build/BUILD/ProDy-1.7.1/python3/build/scripts-3.4 ~/build/BUILD/ProDy-1.7.1
+ pushd python3/build/scripts-3.4
+ PYTHONPATH=/builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages
+ nosetests-3.4 -v -e test_wwpdb.py -e test_enms.py -e test_localpdb.py -e test_msafile.py -e test_pathtools.py -w /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/lib/python3.4/site-packages/prody/tests --tests prody -a '!slow'
testAtomGroup (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testAtomMap (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testChain (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testResidue (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
testSelection (prody.tests.atomic.test_atomic.TestAtomIterations) ... ok
TestCopyAtom (prody.tests.atomic.test_atomic.TestCopying) ... ok
TestCopyAtomGroup (prody.tests.atomic.test_atomic.TestCopying) ... ok
TestCopyChain (prody.tests.atomic.test_atomic.TestCopying) ... ok
TestCopySelstr (prody.tests.atomic.test_atomic.TestCopying) ... ok
testAtom (prody.tests.atomic.test_atomic.TestPickling) ... ok
testAtomGroup (prody.tests.atomic.test_atomic.TestPickling) ... ok
testSelection (prody.tests.atomic.test_atomic.TestPickling) ... ok
testSaveLoad (prody.tests.atomic.test_atomic.TestSaveLoad) ... ok
testInstantiation (prody.tests.atomic.test_atommap.TestInstantiation) ... ok
testAllSelection (prody.tests.atomic.test_atommap.TestSelection) ... ok
testChainSelection (prody.tests.atomic.test_atommap.TestSelection) ... ok
testGetBoolArray (prody.tests.atomic.test_atommap.TestSelection) ... ok
testNameSelection (prody.tests.atomic.test_atommap.TestSelection) ... ok
testSplit (prody.tests.atomic.test_fragment.TestFragment) ... ok
testSplitCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testSplitNoh (prody.tests.atomic.test_fragment.TestFragment) ... ok
testSplitNohCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWhole (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWhole2 (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeAll (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeNoh (prody.tests.atomic.test_fragment.TestFragment) ... ok
testWholeNohCopy (prody.tests.atomic.test_fragment.TestFragment) ... ok
testCA (prody.tests.atomic.test_hierview.TestShuffled) ... ok
testProtein (prody.tests.atomic.test_hierview.TestShuffled) ... ok
testNumResidues (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
testResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
testSelectionResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
testSelectionResidueIndexing2 (prody.tests.atomic.test_hierview.TestTerRecord) ... ok
Test macro *cacb*: 'name CA CB' ... ok
Test macro *donors*: '(protein) and (name N NE NH2 ND2 NE2 ND1 OG OH NH1 SG OG1 NE2 NZ NE1 ND1 NE2)' ... ok
testMacroFunctions (prody.tests.atomic.test_select.TestMacros) ... ok
Test bondedto selections 'bonded to index 0' for imatinib ... ok
Test bondedto selections 'bonded 0 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 3 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 4 to index 0' for imatinib ... ok
Test bondedto selections 'exbonded 1 to index 0' for imatinib ... ok
Test bondedto selections 'exbonded 2 to index 0' for imatinib ... ok
Test bondedto selections 'exbonded 3 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 20 to index 0' for imatinib ... ok
Test bondedto selections 'bonded 20 to index 10' for imatinib ... ok
Test bondedto selections 'exbonded to index 0' for imatinib ... ok
Test bondedto selections 'bonded to index 1000' for imatinib ... ok
Test bondedto selections 'fragment 0' for imatinib ... ok
Test bondedto selections 'fragment 1' for imatinib ... ok
Test bondedto selections 'fragment 0 1 2' for imatinib ... ok
Test bondedto selections 'fragindex 0 1 2' for imatinib ... ok
Test bondedto selections 'fragindex 0:2' for imatinib ... ok
Test bondedto selections 'bonded to index 67' for imatinib ... ok
Test bondedto selections 'exbonded to index 67' for imatinib ... ok
Test bondedto selections 'bonded 2 to index 0' for imatinib ... ok
Test comparisons selections 'x = -51.659' for pdb3mht ... ok
Test comparisons selections 'beta < 10' for pdb3mht ... ok
Test comparisons selections 'occupancy > 0.999999' for pdb3mht ... ok
Test comparisons selections '-10 <= x < 0' for pdb3mht ... ok
Test comparisons selections '11 > 10' for pdb3mht ... ok
Test comparisons selections 'radius > 10' for pdb3mht ... ok
Test comparisons selections 'chain = A' for pdb3mht ... ok
Test comparisons selections 'x x < 1' for pdb3mht ... ok
Test comparisons selections 'name < 1' for pdb3mht ... ok
Test comparisons selections 'x != -51.659' for pdb3mht ... ok
Test comparisons selections 'z >= 82.813' for pdb3mht ... ok
Test comparisons selections 'z < 82.813' for pdb3mht ... ok
Test comparisons selections 'beta > 10' for pdb3mht ... ok
Test composite selections 'chain x y z C and x 10' for pdb3mht ... ok
Test composite selections 'backbone and sqrt((x - 25)**2 + (y - 74)**2 + (z - 13)**2) <= 500' for pdb3mht ... ok
Test composite selections '(not resname SAH) and (protein and name CA) or (nucleic and name P)' for pdb3mht ... ok
Test composite selections 'protein and (backbone or name H)' for pdb3mht ... ok
Test composite selections 'same residue as within 4 of and resname SAH' for pdb3mht ... ok
Test composite selections 'protein and name CA CB and same residue as ((x+21.2)**2 + (y-35.9)**2 + (z-80.0)**2)**0.5 < 10' for pdb3mht ... ok
Test composite selections 'resnum `1` `2`' for pdb3mht ... ok
Test composite selections 'same residue as within 4 of resname SAH' for pdb3mht ... ok
Test composite selections 'name CA and same residue as within 4 of resname SAH' for pdb3mht ... ok
Test composite selections 'water and within 5 of not protein' for pdb3mht ... ok
Test docexamples selections 'serial 1 2 3' for pdb3mht ... ok
Test docexamples selections 'beta 1 to 500' for pdb3mht ... ok
Test docexamples selections 'beta 1:500' for pdb3mht ... ok
Test docexamples selections 'beta < 500' for pdb3mht ... ok
Test docexamples selections 'resnum 120A 120B' for pdb3mht ... ok
Test docexamples selections 'icode A' for pdb3mht ... ok
Test docexamples selections 'icode _' for pdb3mht ... ok
Test docexamples selections 'charge 1' for pdb3mht ... ok
Test docexamples selections 'abs(charge) == 1' for pdb3mht ... ok
Test docexamples selections 'charge < 0' for pdb3mht ... ok
Test docexamples selections '0 < mass < 500' for pdb3mht ... ok
Test docexamples selections 'serial 1 to 10' for pdb3mht ... ok
Test docexamples selections 'abs(mass) <= mass <= 10' for pdb3mht ... ok
Test docexamples selections 'serial 1:10:2' for pdb3mht ... ok
Test docexamples selections 'serial < 10' for pdb3mht ... ok
Test docexamples selections 'beta 555.55' for pdb3mht ... ok
Test equivalent selections 'chain C' for pdb3mht ... ok
Test equivalent selections 'chain C' for pdb3mht ... ok
Test equivalent selections 'nucleic' for pdb3mht ... ok
Test flags selections 'none' for pdb3mht ... ok
Test flags selections 'bend' for pdb3mht ... ok
Test flags selections 'coil' for pdb3mht ... ok
Test flags selections 'aromatic' for pdb3mht ... ok
Test flags selections 'at' for pdb3mht ... ok
Test flags selections 'basic' for pdb3mht ... ok
Test flags selections 'buried' for pdb3mht ... ok
Test flags selections 'cg' for pdb3mht ... ok
Test flags selections 'charged' for pdb3mht ... ok
Test flags selections 'cyclic' for pdb3mht ... ok
Test flags selections 'heme' for pdb3mht ... ok
Test flags selections 'hydrophobic' for pdb3mht ... ok
Test flags selections 'ion' for pdb3mht ... ok
Test flags selections 'all' for pdb3mht ... ok
Test flags selections 'large' for pdb3mht ... ok
Test flags selections 'lipid' for pdb3mht ... ok
Test flags selections 'medium' for pdb3mht ... ok
Test flags selections 'neutral' for pdb3mht ... ok
Test flags selections 'nucleic' for pdb3mht ... ok
Test flags selections 'nucleotide' for pdb3mht ... ok
Test flags selections 'nucleobase' for pdb3mht ... ok
Test flags selections 'nucleoside' for pdb3mht ... ok
Test flags selections 'polar' for pdb3mht ... ok
Test flags selections 'protein' for pdb3mht ... ok
Test flags selections 'acidic' for pdb3mht ... ok
Test flags selections 'stdaa' for pdb3mht ... ok
Test flags selections 'nonstdaa' for pdb3mht ... ok
Test flags selections 'purine' for pdb3mht ... ok
Test flags selections 'pyrimidine' for pdb3mht ... ok
Test flags selections 'small' for pdb3mht ... ok
Test flags selections 'sugar' for pdb3mht ... ok
Test flags selections 'surface' for pdb3mht ... ok
Test flags selections 'water' for pdb3mht ... ok
Test flags selections 'hetero' for pdb3mht ... ok
Test flags selections 'hetatm' for pdb3mht ... ok
Test flags selections 'acyclic' for pdb3mht ... ok
Test flags selections 'calpha' for pdb3mht ... ok
Test flags selections 'backbone' for pdb3mht ... ok
Test flags selections 'backbonefull' for pdb3mht ... ok
Test flags selections 'sidechain' for pdb3mht ... ok
Test flags selections 'carbon' for pdb3mht ... ok
Test flags selections 'hydrogen' for pdb3mht ... ok
Test flags selections 'noh' for pdb3mht ... ok
Test flags selections 'nitrogen' for pdb3mht ... ok
Test flags selections 'oxygen' for pdb3mht ... ok
Test flags selections 'sulfur' for pdb3mht ... ok
Test flags selections 'aliphatic' for pdb3mht ... ok
Test flags selections 'extended' for pdb3mht ... ok
Test flags selections 'helix' for pdb3mht ... ok
Test flags selections 'helix310' for pdb3mht ... ok
Test flags selections 'turn' for pdb3mht ... ok
Test flags selections 'bridge' for pdb3mht ... ok
Test float selections 'beta 5.0 41.15 11.85' for pdb3mht ... ok
Test float selections 'charge 0' for pdb3mht ... ok
Test float selections 'mass 1' for pdb3mht ... ok
Test float selections 'radius 0' for pdb3mht ... ok
Test float selections 'beta "1."' for pdb3mht ... ok
Test float selections 'beta = "1."' for pdb3mht ... ok
Test float selections 'occupancy 1.0' for pdb3mht ... ok
Test float selections 'x 6.665' for pdb3mht ... ok
Test float selections 'y 69.99 13.314' for pdb3mht ... ok
Test float selections 'z 115.246 45.784' for pdb3mht ... ok
Test function selections 'sqrt(x**2 + y**2 + z**2) < 100' for pdb3mht ... ok
Test function selections 'floor(beta) == 10' for pdb3mht ... ok
Test function selections 'abs(x) == sqrt(sq(x))' for pdb3mht ... ok
Test function selections 'sq(x-5)+sq(y+4)+sq(z) > sq(100)' for pdb3mht ... ok
Test function selections '1 > sq(occ)' for pdb3mht ... ok
Test function selections 'sq(x x) > 1' for pdb3mht ... ok
Test function selections 'sqrt(x**2 + y**2 + z**2) == (x**2 + y**2 + z**2) ** 0.5' for pdb3mht ... ok
Test function selections 'beta % 3 < 1' for pdb3mht ... ok
Test function selections 'beta % 4 % 3 < 1' for pdb3mht ... ok
Test function selections 'ceil(beta) == 10' for pdb3mht ... ok
Test integer selections 'index 10 20 10000' for pdb3mht ... ok
Test integer selections 'resid 0' for pdb3mht ... ok
Test integer selections 'resid 100 105' for pdb3mht ... ok
Test integer selections 'resid 100 A 105' for pdb3mht ... ok
Test integer selections 'fragindex 0' for pdb3mht ... ok
Test integer selections 'fragment 0' for pdb3mht ... ok
Test integer selections 'serial 0' for pdb3mht ... ok
Test integer selections 'serial 1 2' for pdb3mht ... ok
Test integer selections 'resnum 0' for pdb3mht ... ok
Test integer selections 'resnum 100 105' for pdb3mht ... ok
Test invalid selections 'chain C and and chain C' for pdb3mht ... ok
Test invalid selections 'x > sq(calpha)' for pdb3mht ... ok
Test invalid selections 'x > sq(name CA and resname ALA)' for pdb3mht ... ok
Test invalid selections 'resname ALA and +1' for pdb3mht ... ok
Test invalid selections 'chain C or or chain D' for pdb3mht ... ok
Test invalid selections 'chain C or not or chain D' for pdb3mht ... ok
Test invalid selections 'chain C + 3' for pdb3mht ... ok
Test invalid selections 'sqr(x-5)+sqr(y+4)+sqr(z) > sqr(100)' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of origin' for pdb3mht ... ok
Test kwargs selections 'within 100 of none' for pdb3mht ... ok
Test logical selections 'name or name' for pdb3mht ... ok
Test logical selections 'not not not not index 1' for pdb3mht ... ok
Test logical selections 'index 0 or index 1 or index 2' for pdb3mht ... ok
Test logical selections 'index 0 or index 1 or index 2 or index 4' for pdb3mht ... ok
Test logical selections 'index 0 and index 1 ' for pdb3mht ... ok
Test logical selections 'index < 50 and index < 5' for pdb3mht ... ok
Test logical selections 'index < 50 and index < 25 and index < 5' for pdb3mht ... ok
Test logical selections 'index < 5 and index < 25 and index < 50' for pdb3mht ... ok
Test logical selections 'index 0 to 5 and index 0 to 25 and index 0 to 50' for pdb3mht ... ok
Test logical selections 'index < 5 and index < 25 and index < 50 or index < 50 or index < 5' for pdb3mht ... ok
Test logical selections 'name and name' for pdb3mht ... ok
Test logical selections 'name CA and name CA' for pdb3mht ... ok
Test logical selections 'name CA or name CA' for pdb3mht ... ok
Test logical selections 'index 0 or index 1 ' for pdb3mht ... ok
Test operation selections 'x ** 2 < 10' for pdb3mht ... ok
Test operation selections 'x ** 2 ** 2 ** 2 < 10' for pdb3mht ... ok
Test operation selections 'x ** (+2 ** (+2 ** +2)) < 10' for pdb3mht ... ok
Test operation selections 'occupancy % 2 == 1' for pdb3mht ... ok
Test operation selections 'x**2 + y**2 + z**2 < 10000' for pdb3mht ... ok
Test range selections 'index 0:10' for pdb3mht ... ok
Test range selections 'resnum 10:16:1' for pdb3mht ... ok
Test range selections 'resnum `-3:16:1`' for pdb3mht ... ok
Test range selections 'resid 10to15' for pdb3mht ... ok
Test range selections 'resid 10:16:1' for pdb3mht ... ok
Test range selections 'x `-10:20`' for pdb3mht ... ok
Test range selections 'x 0:20:1' for pdb3mht ... ok
Test range selections 'beta 13.02:13.01' for pdb3mht ... ok
Test range selections 'index 0to10' for pdb3mht ... ok
Test range selections 'serial 0:10:2' for pdb3mht ... ok
Test range selections 'serial 0:10:10' for pdb3mht ... ok
Test range selections 'resnum 10to15' for pdb3mht ... ok
Test regexp selections 'resname "S.."' for pdb3mht ... ok
Test regexp selections 'name "C.*"' for pdb3mht ... ok
Test regexp selections 'name ".*\'"' for pdb3mht ... ok
Test regexp selections 'name "C(A|B)"' for pdb3mht ... ok
Test regexp selections 'name "C((A|B)"' for pdb3mht ... ok
Test sameas selections 'same residue as index 0' for pdb3mht ... ok
Test sameas selections 'same residue as chain X' for pdb3mht ... ok
Test sameas selections 'same none as chain C' for pdb3mht ... ok
Test sameas selections 'same residue as same residue as same residue as index 0' for pdb3mht ... ok
Test sameas selections 'same chain as index 0' for pdb3mht ... ok
Test sameas selections 'same segment as index 0' for pdb3mht ... ok
Test sameas selections 'same residue as resname DG ALA' for pdb3mht ... ok
Test sameas selections 'same chain as chain C' for pdb3mht ... ok
Test sequence selections 'sequence al' for pdb3mht ... ok
Test sequence selections 'sequence "SS."' for pdb3mht ... ok
Test sequence selections 'sequence "S[A-Z]{2}G"' for pdb3mht ... ok
Test sequence selections 'sequence "S.S.S"' for pdb3mht ... ok
Test sequence selections 'sequence "."' for pdb3mht ... ok
Test sequence selections 'sequence A' for pdb3mht ... ok
Test sequence selections 'sequence MIEIK' for pdb3mht ... ok
Test sequence selections 'sequence VLNAL' for pdb3mht ... ok
Test sequence selections 'sequence FKPY' for pdb3mht ... ok
Test specialchar selections 'altloc ` `' for pdb3mht ... ok
Test specialchar selections 'name A` `CA`' for pdb3mht ... ok
Test specialchar selections 'name `A``' for pdb3mht ... ok
Test specialchar selections 'z `+100.291`' for pdb3mht ... ok
Test string selections 'name P' for pdb3mht ... ok
Test string selections 'chain x y' for pdb3mht ... ok
Test string selections 'chain x y z' for pdb3mht ... ok
Test string selections 'chain x y z C' for pdb3mht ... ok
Test string selections 'chain C D' for pdb3mht ... ok
Test string selections 'chain CD' for pdb3mht ... ok
Test string selections 'resname DG' for pdb3mht ... ok
Test string selections 'resname DG ALA' for pdb3mht ... ok
Test string selections 'altloc A' for pdb3mht ... ok
Test string selections 'altloc _' for pdb3mht ... ok
Test string selections 'secondary H' for pdb3mht ... ok
Test string selections 'name P CA' for pdb3mht ... ok
Test string selections 'secondary H E' for pdb3mht ... ok
Test string selections 'secondary _' for pdb3mht ... ok
Test string selections 'segment _' for pdb3mht ... ok
Test string selections 'name `A 1`' for pdb3mht ... ok
Test string selections 'chain C' for pdb3mht ... ok
Test string selections 'chain x' for pdb3mht ... ok
Test synonyms selections 'chain C' for pdb3mht ... ok
Test synonyms selections 'chain C D' for pdb3mht ... ok
Test unintended selections 'abs beta = beta' for pdb3mht ... ok
Test userdata selections 'temp < 10' for pdb3mht ... ok
Test userdata selections 'occ and occupancy == 1' for pdb3mht ... ok
Test userdata selections 'occ and occupancy == 1 and oc10 - 9 == 1' for pdb3mht ... ok
Test userdata selections 'occ and occupancy == 1 and temp < 10' for pdb3mht ... ok
Test userdata selections 'occ > 0' for pdb3mht ... ok
Test userdata selections 'temp < 10 and chain D' for pdb3mht ... ok
Test userdata selections 'oc10 - 9 == 1' for pdb3mht ... ok
Test userdata selections 'temp < 10' for pdb3mht ... ok
Test userdata selections 'occ' for pdb3mht ... ok
Test within selections 'within 10 of index 0' for pdb3mht ... ok
Test within selections 'exwithin 5 of exwithin 5 of exwithin 5 of index 0' for pdb3mht ... ok
Test within selections 'within 1 of pdb' for pdb3mht ... ok
Test within selections 'exwithin 1 of pdb' for pdb3mht ... ok
Test within selections 'exwithin 1 of ag' for pdb3mht ... ok
Test within selections 'within 100 of index 10000' for pdb3mht ... ok
Test within selections 'exwithin 100 of index 0' for pdb3mht ... ok
Test within selections 'exwithin 4 of resname SAH' for pdb3mht ... ok
Test within selections '(within 4 of water) and not water' for pdb3mht ... ok
Test within selections 'within 5 of within 5 of within 5 of index 0' for pdb3mht ... ok
Test without_and selections 'coil protein' for pdb3mht ... ok
Test without_and selections 'noh hetero water' for pdb3mht ... ok
Test without_and selections 'ca occupancy > 0' for pdb3mht ... ok
Test without_and selections 'ca occupancy - 0 > 0' for pdb3mht ... ok
Test without_and selections 'ca occupancy - 0 > 0 + 0' for pdb3mht ... ok
Test without_and selections 'occupancy > ca 0' for pdb3mht ... ok
Test without_and selections 'noh hetero (water)' for pdb3mht ... ok
Test without_and selections 'noh hetero not (water)' for pdb3mht ... ok
Test without_and selections '(water) hetero' for pdb3mht ... ok
Test without_and selections 'ca abs(beta) = beta + abs(0)' for pdb3mht ... ok
Test without_and selections 'sidechain sc protein' for pdb3mht ... ok
Test without_and selections 'bbfull bb' for pdb3mht ... ok
Test without_and selections '(charged basic)' for pdb3mht ... ok
Test without_and selections '(protein nucleic)' for pdb3mht ... ok
prody.tests.atomic.test_select.testGetBoolArray ... ok
testSetData (prody.tests.atomic.test_subset.TestUserData) ... ok
testMode1d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testMode3d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testModel1d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testModel3d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testVector1d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testVector3d (prody.tests.dynamics.test_editing.TestExtending) ... ok
testCoordinates (prody.tests.ensemble.test_conformation.TestConformation) ... ok
testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestConformation) ... ok
Test get index function. ... ok
Test get index function. ... ok
testWeights (prody.tests.ensemble.test_conformation.TestConformation) ... ok
testCoordinates (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testGetIndex (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testGetNumAtoms (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testWeights (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
testWeightsForAll (prody.tests.ensemble.test_conformation.TestPDBConformation) ... ok
Test concatenation of ensembles without weights. ... ok
Test concatenation of ensembles without and with weights. ... ok
Test concatenation of ensembles with weights. ... ok
Test concatenation of ensembles with and without weights. ... ok
testDelCoordsetAll (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testDelCoordsetMiddle (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
Test correctness of reference coordinates. ... ok
Test correctness of all coordinates. ... ok
testGetNumAtoms (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testGetNumCsets (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testGetRMSDs (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testGetRMSDsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
Test correctness of all weights. ... ok
Test coordinate iteration. ... ok
Test slicing operation. ... ok
Test making a copy by slicing operation. ... ok
Test slicing with a list. ... ok
Test slicing operation with weights. ... ok
testSuperpose (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testSuperposeWeights (prody.tests.ensemble.test_ensemble.TestEnsemble) ... ok
testInvalidType (prody.tests.ensemble.test_functions.TestCalcOccupancies) ... ok
testResults (prody.tests.ensemble.test_functions.TestCalcOccupancies) ... ok
testWeightsNone (prody.tests.ensemble.test_functions.TestCalcOccupancies) ... ok
Test concatenation of PDB ensembles. ... ok
Test consequences of deleting all coordinate sets. ... ok
testDelCoordsetMiddle (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetCoordinates (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetNumAtoms (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetNumCsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testGetWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testIterCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicing (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicingCopy (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicingList (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testSlicingWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble) ... ok
testAllSearch (prody.tests.kdtree.test_kdtree.TestKDTree) ... ok
testSearch (prody.tests.kdtree.test_kdtree.TestKDTree) ... ok
testPairNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testPairPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testPointNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testPointPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC) ... ok
testMINvsMAX (prody.tests.measure.test_contacts.TestContacts) ... ok
testPBCvsNONE (prody.tests.measure.test_contacts.TestContacts) ... ok
testAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testNoPBC (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testPBC (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testPBCAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testPBCCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors) ... ok
testCenter (prody.tests.measure.test_measure.TestCenter) ... ok
testCenterWithWeights (prody.tests.measure.test_measure.TestCenter) ... ok
testMultiCoordsets (prody.tests.measure.test_measure.TestCenter) ... ok
testMultiCoordsetsWithWeights (prody.tests.measure.test_measure.TestCenter) ... ok
testCTerPhi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testCTerPsi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testCalcPhi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testCalcPsi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testNTerPhi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testNTerPsi (prody.tests.measure.test_measure.TestDihedrals) ... ok
testPBC (prody.tests.measure.test_measure.TestDistances) ... ok
testPBCSymmetry (prody.tests.measure.test_measure.TestDistances) ... ok
testMSF (prody.tests.measure.test_measure.TestMSF) ... ok
testMSFfloat (prody.tests.measure.test_measure.TestMSF) ... ok
testByArgument (prody.tests.measure.test_transform.TestMoveAtoms) ... ok
testToArgument (prody.tests.measure.test_transform.TestMoveAtoms) ... ok
testTransformation (prody.tests.measure.test_transform.TestMoveAtoms) ... ok
testWrap (prody.tests.measure.test_transform.TestWrapAtoms) ... ok
testHeaderContent (prody.tests.proteins.test_header.TestParsePDBHeaderOnly) ... ok
testHeaderType (prody.tests.proteins.test_header.TestParsePDBHeaderOnly) ... ok
Test number of coordinate sets when using *ag* arguments. ... ok
Test number of coordinate sets when using *ag* arguments. ... ok
Test outcome of valid and invalid *ag* arguments. ... ok
testBiomolArgument (prody.tests.proteins.test_pdbfile.TestParsePDB) ... ok
Test outcome of valid and invalid *chain* arguments. ... ok
Test outcome of valid and invalid *model* arguments. ... ok
Test outcome of invalid *pdb* arguments. ... ok
testSecondaryArgument (prody.tests.proteins.test_pdbfile.TestParsePDB) ... ok
Test outcome of valid and invalid *subset* arguments. ... ok
Test outcome of *title* argument. ... ok
Test the outcome of a simple parsing scenario. ... ok
testAltlocA (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAltlocB (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAltlocC (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAltlocNone (prody.tests.proteins.test_pdbfile.TestParsePDBAltloc) ... ok
testAtomGroupContent (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels) ... ok
testAtomGroupType (prody.tests.proteins.test_pdbfile.TestParsePDBHeaderAndAllModels) ... ok
testResidueCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testResidueOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testSequenceCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testSequenceOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy) ... ok
testMATLAB (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testZero1 (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testZero2 (prody.tests.sequence.test_analysis.TestCalcMeff) ... ok
testAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testInf (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testNorm (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testNorm2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testSixSequences (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMutualInfo) ... ok
testAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testFourSequences (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testInf (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testZero (prody.tests.sequence.test_analysis.TestCalcOMES) ... ok
testMATLAB (prody.tests.sequence.test_analysis.TestCalcSCA) ... ok
testZero (prody.tests.sequence.test_analysis.TestCalcSCA) ... ok
testAmbiguous (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testGapDividend (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testSixSequences (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testSmallProbability (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestCalcShannonEntropy) ... ok
testMATLAB10 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testMATLAB8 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testTwenty (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testTwentyReversed (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero1 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero2 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero3 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testZero4 (prody.tests.sequence.test_analysis.TestDirectInfo) ... ok
testIdentityMatrix (prody.tests.sequence.test_analysis.TestIdentity) ... ok
testIdentityMatrixNonTurbo (prody.tests.sequence.test_analysis.TestIdentity) ... ok
testUnique (prody.tests.sequence.test_analysis.TestUnique) ... ok
testUnique2 (prody.tests.sequence.test_analysis.TestUnique) ... ok
testMerge (prody.tests.sequence.test_msa.TestMerging) ... ok
testAll (prody.tests.sequence.test_msa.TestRefinement) ... ok
testColocc (prody.tests.sequence.test_msa.TestRefinement) ... ok
testLabel (prody.tests.sequence.test_msa.TestRefinement) ... ok
testRowCol (prody.tests.sequence.test_msa.TestRefinement) ... ok
testRowocc (prody.tests.sequence.test_msa.TestRefinement) ... ok
testSeqid (prody.tests.sequence.test_msa.TestRefinement) ... ok
testSeqidLabel (prody.tests.sequence.test_msa.TestRefinement) ... ok
testStringConversion (prody.tests.sequence.test_sequence.TestSequence) ... ok
testParseDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testWrite (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testWriteDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testWriteModeAppend (prody.tests.trajectory.test_dcdfile.TestDCDFile) ... ok
testAll (prody.tests.trajectory.test_frame.TestSuperpose) ... ok
testCarbon (prody.tests.trajectory.test_frame.TestSuperpose) ... ok
testCoords (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testCoordset (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testCoordsetNatoms (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testInvalidCoords (prody.tests.utilities.test_checkers.TestCheckCoords) ... ok
testCorrectMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testCorrectMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testCorrectMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testWrongMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testWrongMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testWrongMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes) ... ok
testContinuous (prody.tests.utilities.test_misctools.TestRangeString) ... ok
testGapped (prody.tests.utilities.test_misctools.TestRangeString) ... ok
testNegative (prody.tests.utilities.test_misctools.TestRangeString) ... ok
testRepeated (prody.tests.utilities.test_misctools.TestRangeString) ... ok
----------------------------------------------------------------------
Ran 497 tests in 13.940s
OK
+ popd
~/build/BUILD/ProDy-1.7.1
+ exit 0
Processing files: ProDy-1.7.1-3.fc22.armv7hl
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.sCNR1w
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-1.7.1
+ DOCDIR=/builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/doc/ProDy
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/doc/ProDy
+ cp -pr python2/README.rst /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/doc/ProDy
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.VPhnrE
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-1.7.1
+ LICENSEDIR=/builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/licenses/ProDy
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/licenses/ProDy
+ cp -pr python2/LICENSE.rst /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/licenses/ProDy
+ exit 0
Provides: ProDy = 1.7.1-3.fc22 ProDy(armv7hl-32) = 1.7.1-3.fc22 python-ProDy = 1.7.1-3.fc22
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python2 python(abi) = 2.7
Obsoletes: python-ProDy < 1.7.1-3.fc22
Processing files: python3-ProDy-1.7.1-3.fc22.armv7hl
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ziGLc5
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-1.7.1
+ DOCDIR=/builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/doc/python3-ProDy
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/doc/python3-ProDy
+ cp -pr python3/README.rst /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/doc/python3-ProDy
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.33WrCz
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-1.7.1
+ LICENSEDIR=/builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/licenses/python3-ProDy
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/licenses/python3-ProDy
+ cp -pr python3/LICENSE.rst /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm/usr/share/licenses/python3-ProDy
+ exit 0
Provides: python3-ProDy = 1.7.1-3.fc22 python3-ProDy(armv7hl-32) = 1.7.1-3.fc22
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libc.so.6 libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libpthread.so.0 libpthread.so.0(GLIBC_2.4) libpython3.4m.so.1.0 python(abi) = 3.4 rtld(GNU_HASH)
Processing files: ProDy-debuginfo-1.7.1-3.fc22.armv7hl
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm
Wrote: /builddir/build/RPMS/ProDy-1.7.1-3.fc22.armv7hl.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-1.7.1-3.fc22.armv7hl.rpm
Wrote: /builddir/build/RPMS/ProDy-debuginfo-1.7.1-3.fc22.armv7hl.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.bmrgOM
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-1.7.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/ProDy-1.7.1-3.fc22.arm
+ exit 0
Child return code was: 0
LEAVE do -->