Mock Version: 1.1.8 Mock Version: 1.1.8 ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/lagan.spec'], False, '/var/lib/mock/dist-f15-build-976854-147398/root/', None, 86400, True, 0, 496, 496, None, logger=) Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/lagan.spec'] warning: Could not canonicalize hostname: x86-11.phx2.fedoraproject.org Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/lagan-2.0-7.fc15.src.rpm Child returncode was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/lagan.spec'], False, '/var/lib/mock/dist-f15-build-976854-147398/root/', None, 86400, True, 0, 496, 496, None, logger=) Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/lagan.spec'] Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.pmlURN + umask 022 + cd /builddir/build/BUILD + LANG=C + export LANG + unset DISPLAY + cd /builddir/build/BUILD + rm -rf lagan20 + /usr/bin/gzip -dc /builddir/build/SOURCES/lagan20.tar.gz + /bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd lagan20 + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (lagan20-chris.patch):' Patch #0 (lagan20-chris.patch): + /bin/cat /builddir/build/SOURCES/lagan20-chris.patch + /usr/bin/patch -s -p1 -b --suffix .chris --fuzz=0 + sed -i 's/^CC .*$/CC = gcc $(RPM_OPT_FLAGS)/; s/^CPP .*$/CPP = g++ $(RPM_OPT_FLAGS)/' Makefile + sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib64/lagan"|g' src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c src/utils/bin2bl.c src/utils/bin2mf.c src/utils/cextract.c src/utils/contigorder.c src/utils/cstat.c src/utils/fa2xfa.c src/utils/getbounds.c src/utils/getcontigpos.c src/utils/getlength.c src/utils/getoverlap.c src/utils/overlay.c src/utils/rc.c src/utils/scorealign.c src/utils/scorecontigs.c src/utils/seqmerge.c + sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib64/lagan"|g' src/utils/Glue.cpp src/utils/dotplot.cpp + sed -i 's|$ENV{LAGAN_DIR}|"/usr/lib64/lagan"|g' anal_gloc.pl lagan.pl rechaos.pl slagan-mfa.pl slagan.pl supermap.pl xmfa2mfa.pl src/anal_gloc.pl src/lagan.pl src/rechaos.pl src/slagan-mfa.pl src/slagan.pl src/supermap.pl src/xmfa2mfa.pl utils/cmerge2.pl utils/draft.pl utils/flipchaos.pl utils/mextract.pl utils/mf2bin.pl utils/mpretty.pl utils/mproject.pl utils/mrun.pl utils/mrunfile.pl utils/mrunpairs.pl utils/msplit.pl utils/mviz.pl src/utils/cmerge2.pl src/utils/draft.pl src/utils/mextract.pl src/utils/mf2bin.pl src/utils/mpretty.pl src/utils/mproject.pl src/utils/mrun.pl src/utils/mrunfile.pl src/utils/mrunpairs.pl src/utils/mviz.pl + sed -i 's|$LAGAN_DIR|/usr/lib64/lagan|g' Readmes/README.shuffle src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c + sed -i s/getline/GetLine/g src/anchors.c + rm prolagan + chmod -x src/glocal/Makefile src/glocal/default.score src/glocal/glocal src/glocal/glocal.cpp src/glocal/glocal.h src/glocal/io.cpp src/glocal/io.h src/glocal/leftinfluence.cpp src/glocal/leftinfluence.h src/glocal/rightinfluence.cpp src/glocal/rightinfluence.h src/glocal/score.cpp src/glocal/score.cpp.chris src/glocal/score.h src/glocal/structs.h src/glocal/test.score + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.A7ck0b + umask 022 + cd /builddir/build/BUILD + cd lagan20 + LANG=C + export LANG + unset DISPLAY + make -j16 'CFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic' 'CXXFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic' (cd src; make) make[1]: Entering directory `/builddir/build/BUILD/lagan20/src' gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../anchors anchors.c skiplist.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../order order.c diagmatrix.c filebuffer.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/bin2mf utils/bin2mf.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/bin2bl utils/bin2bl.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/cextract utils/cextract.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/cstat utils/cstat.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/contigorder utils/contigorder.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/getbounds utils/getbounds.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/getlength utils/getlength.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/getoverlap utils/getoverlap.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/rc utils/rc.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/seqmerge utils/seqmerge.c gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/scorealign utils/scorealign.c -lm utils/bin2bl.c: In function 'main': utils/bin2bl.c:52:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] utils/bin2bl.c:22:7: warning: unused variable 'width' [-Wunused-variable] utils/contigorder.c: In function 'getFileInfo': utils/contigorder.c:15:5: warning: format '%s' expects a matching 'char *' argument [-Wformat] utils/contigorder.c:26:2: warning: unknown conversion type character '&' in format [-Wformat] utils/contigorder.c:26:2: warning: too many arguments for format [-Wformat-extra-args] utils/contigorder.c: In function 'getScores': utils/contigorder.c:52:5: warning: format '%s' expects a matching 'char *' argument [-Wformat] utils/contigorder.c: In function 'solveOrder': utils/contigorder.c:176:30: warning: unused variable 'ptr' [-Wunused-variable] utils/cstat.c: In function 'cntlets': utils/cstat.c:51:5: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] utils/cstat.c:52:7: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] utils/cextract.c: In function 'main': utils/cextract.c:108:1: warning: control reaches end of non-void function [-Wreturn-type] utils/contigorder.c: In function 'getScores': utils/contigorder.c:56:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/contigorder.c:57:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/contigorder.c:63:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/cstat.c: In function 'main': utils/cstat.c:234:7: warning: unused variable 'i' [-Wunused-variable] utils/contigorder.c: In function 'getFileInfo': utils/contigorder.c:19:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/contigorder.c:20:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/contigorder.c:26:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/cextract.c: In function 'readfile': utils/cextract.c:41:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/getoverlap.c: In function 'main': utils/getoverlap.c:33:1: warning: control reaches end of non-void function [-Wreturn-type] utils/cextract.c: In function 'getLength': utils/cextract.c:16:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/getbounds.c: In function 'main': utils/getbounds.c:32:27: warning: unused variable 'ext' [-Wunused-variable] utils/cstat.c:252:1: warning: control reaches end of non-void function [-Wreturn-type] utils/cstat.c: In function 'readseq': utils/cstat.c:67:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/cstat.c: In function 'cntlets': utils/cstat.c:44:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/getbounds.c: In function 'getLength': utils/getbounds.c:18:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/rc.c: In function 'main': utils/rc.c:39:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/scorealign.c: In function 'getSequence': utils/scorealign.c:262:8: warning: variable 'prevch' set but not used [-Wunused-but-set-variable] utils/scorealign.c: In function 'getSequences': utils/scorealign.c:322:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] utils/scorealign.c:310:7: warning: unused variable 'i' [-Wunused-variable] utils/scorealign.c: In function 'processSequences': utils/scorealign.c:353:10: warning: unused variable 'j' [-Wunused-variable] utils/scorealign.c: In function 'readScoreMatrix': utils/scorealign.c:411:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/scorealign.c:419:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/scorealign.c:421:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/scorealign.c:426:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/scorealign.c: In function 'getSequence': utils/scorealign.c:266:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] anchors.c: In function 'hptrcomp': anchors.c:49:7: warning: unused variable 'jt' [-Wunused-variable] prolagan.c: In function 'hptrcomp': prolagan.c:41:7: warning: unused variable 'jt' [-Wunused-variable] mlagan.c: In function 'hptrcomp': mlagan.c:38:7: warning: unused variable 'jt' [-Wunused-variable] prolagan.c: In function 'readfile': prolagan.c:93:9: warning: too many arguments for format [-Wformat-extra-args] mlagan.c: In function 'readfile': mlagan.c:93:9: warning: too many arguments for format [-Wformat-extra-args] fchaos.c: In function 'removeDups': fchaos.c:302:24: warning: unused variable 'temp' [-Wunused-variable] mlagan.c: In function 'getAnchsFromFile': mlagan.c:161:29: warning: unused variable 'first' [-Wunused-variable] anchors.c: In function 'doOutput': anchors.c:171:17: warning: unused variable 'bestscore' [-Wunused-variable] anchors.c:171:14: warning: unused variable 'i' [-Wunused-variable] anchors.c:168:7: warning: variable 'len' set but not used [-Wunused-but-set-variable] prolagan.c: In function 'appendAlignProfile': prolagan.c:163:9: warning: unused variable 'j' [-Wunused-variable] prolagan.c: In function 'readProfile': prolagan.c:198:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] fchaos.c: In function 'readfile': fchaos.c:357:2: warning: too many arguments for format [-Wformat-extra-args] mlagan.c: In function 'generateAnchors': mlagan.c:213:8: warning: unused variable 'flip' [-Wunused-variable] mlagan.c:211:10: warning: unused variable 'temp' [-Wunused-variable] fchaos.c: In function 'chain': fchaos.c:401:16: warning: unused variable 'd2' [-Wunused-variable] fchaos.c:401:10: warning: unused variable 'd1' [-Wunused-variable] fchaos.c:401:7: warning: unused variable 'i' [-Wunused-variable] prolagan.c: In function 'getAnchsFromFile': prolagan.c:246:29: warning: unused variable 'first' [-Wunused-variable] mlagan.c: In function 'remakeHLL': mlagan.c:310:10: warning: unused variable 'bestscore' [-Wunused-variable] mlagan.c:310:7: warning: unused variable 'i' [-Wunused-variable] mlagan.c:309:20: warning: unused variable 't3' [-Wunused-variable] mlagan.c:309:15: warning: unused variable 't2' [-Wunused-variable] mlagan.c:307:7: warning: unused variable 'len' [-Wunused-variable] prolagan.c: In function 'generateAnchors':fchaos.c: In function 'findPrev': prolagan.c:298:8: warning: unused variable 'flip' [-Wunused-variable]fchaos.c:440:7: warning: unused variable 'doneset' [-Wunused-variable] prolagan.c:296:10: warning: unused variable 'temp' [-Wunused-variable] prolagan.c: In function 'remakeHLL': prolagan.c:395:10: warning: unused variable 'bestscore' [-Wunused-variable] prolagan.c:395:7: warning: unused variable 'i' [-Wunused-variable] prolagan.c:394:20: warning: unused variable 't3' [-Wunused-variable] prolagan.c:394:15: warning: unused variable 't2' [-Wunused-variable] prolagan.c:392:7: warning: unused variable 'len' [-Wunused-variable] fchaos.c: In function 'doAlgo': fchaos.c:543:24: warning: unused variable 'bestdbaseloc' [-Wunused-variable] fchaos.c:543:7: warning: unused variable 'bestqueryloc' [-Wunused-variable] fchaos.c:542:9: warning: unused variable 'bestscore' [-Wunused-variable] mlagan.c: In function 'iterativeImprovement': mlagan.c:485:10: warning: unused variable 'readd' [-Wunused-variable] mlagan.c:483:12: warning: unused variable 'oldscore' [-Wunused-variable] anchors.c: In function 'GetLine': anchors.c:232:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] mlagan.c: In function 'treeToRPN': mlagan.c:528:16: warning: unused variable 'j' [-Wunused-variable] prolagan.c: In function 'processAnchors': prolagan.c:539:36: warning: unused variable 'uni' [-Wunused-variable] prolagan.c: In function 'iterativeImprovement': prolagan.c:587:10: warning: unused variable 'readd' [-Wunused-variable] prolagan.c:585:12: warning: unused variable 'oldscore' [-Wunused-variable] prolagan.c: In function 'treeToRPN': prolagan.c:630:16: warning: unused variable 'j' [-Wunused-variable] utils/cextract.c: In function 'readfile': utils/cextract.c:59:8: warning: 'ch' may be used uninitialized in this function [-Wuninitialized] gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/scorecontigs utils/scorecontigs.c -lm order.c: In function 'readAncFile': order.c:237:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses] order.c:238:2: warning: suggest parentheses around '&&' within '||' [-Wparentheses] order.c: In function 'mkBarrel': order.c:274:7: warning: unused variable 'incr' [-Wunused-variable] order.c: In function 'doAlign': order.c:409:5: warning: implicit declaration of function 'printMFAAlign' [-Wimplicit-function-declaration] order.c:411:5: warning: implicit declaration of function 'printXMFAAlign' [-Wimplicit-function-declaration] order.c: In function 'getChain': order.c:486:7: warning: unused variable 'temp' [-Wunused-variable] order.c: In function 'saveNeck': order.c:561:6: warning: unused variable 'second' [-Wunused-variable] order.c:560:9: warning: unused variable 'first' [-Wunused-variable] order.c: In function 'joinAligns': order.c:586:10: warning: unused variable 'n' [-Wunused-variable] order.c: In function 'printBinAlign': order.c:718:7: warning: array subscript has type 'char' [-Wchar-subscripts] order.c:720:7: warning: array subscript has type 'char' [-Wchar-subscripts] anchors.c: In function 'findBestChain': anchors.c:164:3: warning: 'bestptr' may be used uninitialized in this function [-Wuninitialized] order.c: In function 'printMFAAlign': order.c:773:27: warning: unused variable 'nlets' [-Wunused-variable] order.c:773:7: warning: unused variable 'nm' [-Wunused-variable] order.c: In function 'printXMFAAlign': order.c:805:27: warning: unused variable 'nlets' [-Wunused-variable] order.c:805:7: warning: unused variable 'nm' [-Wunused-variable] order.c:833:1: warning: control reaches end of non-void function [-Wreturn-type] order.c: In function 'printMFAAlign': order.c:801:1: warning: control reaches end of non-void function [-Wreturn-type] order.c: In function 'printTextAlign': order.c:769:1: warning: control reaches end of non-void function [-Wreturn-type] order.c: In function 'printBinAlign': order.c:725:1: warning: control reaches end of non-void function [-Wreturn-type] fchaos.c: In function 'main': fchaos.c:885:7: warning: unused variable 'i' [-Wunused-variable] fchaos.c: In function 'saveScore': fchaos.c:970:7: warning: unused variable 'temp' [-Wunused-variable] fchaos.c: In function 'savenfreeLList': fchaos.c:1137:9: warning: variable 'j' set but not used [-Wunused-but-set-variable] order.c: In function 'readSubstMatrix': order.c:145:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] order.c:149:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] order.c:150:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mlagan.c: In function 'main': mlagan.c:1067:5: warning: implicit declaration of function 'printXMFAAlign' [-Wimplicit-function-declaration] mlagan.c:942:8: warning: unused variable 'command' [-Wunused-variable] mlagan.c:941:24: warning: unused variable 'y' [-Wunused-variable] mlagan.c:941:21: warning: unused variable 'x' [-Wunused-variable] mlagan.c:939:14: warning: unused variable 'seqfile' [-Wunused-variable] order.c: In function 'readfile': order.c:61:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] mlagan.c: In function 'treeToRPN': mlagan.c:565:1: warning: control reaches end of non-void function [-Wreturn-type] prolagan.c: In function 'main': prolagan.c:1087:5: warning: implicit declaration of function 'printXMFAAlign' [-Wimplicit-function-declaration] gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/getcontigpos utils/getcontigpos.c prolagan.c:966:8: warning: unused variable 'table' [-Wunused-variable] prolagan.c:960:8: warning: unused variable 'command' [-Wunused-variable] prolagan.c:954:14: warning: unused variable 'seqfile' [-Wunused-variable] mlagan.c: In function 'readfile': mlagan.c:79:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/seqmerge.c: In function 'main': utils/seqmerge.c:33:3: warning: suggest parentheses around comparison in operand of '^' [-Wparentheses] fchaos.c: In function 'readSubstMatrix': fchaos.c:622:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fchaos.c:627:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fchaos.c:628:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] utils/getlength.c: In function 'main': utils/getlength.c:20:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fchaos.c: In function 'readfile': fchaos.c:344:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/fa2xfa utils/fa2xfa.c prolagan.c: In function 'treeToRPN': prolagan.c:667:1: warning: control reaches end of non-void function [-Wreturn-type] utils/scorecontigs.c: In function 'cntlets': utils/scorecontigs.c:63:5: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] utils/scorecontigs.c:64:7: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] utils/scorecontigs.c:65:7: warning: implicit declaration of function 'isalpha' [-Wimplicit-function-declaration] utils/scorecontigs.c: In function 'analyze': utils/scorecontigs.c:344:13: warning: unused variable 'k' [-Wunused-variable] prolagan.c: In function 'readfile': prolagan.c:79:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/scorecontigs.c: In function 'main': utils/scorecontigs.c:384:5: warning: format '%s' expects argument of type 'char *', but argument 6 has type 'char (*)[1024]' [-Wformat] utils/seqmerge.c:19:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/seqmerge.c:34:1: warning: control reaches end of non-void function [-Wreturn-type] utils/scorecontigs.c:410:1: warning: control reaches end of non-void function [-Wreturn-type] utils/scorecontigs.c: In function 'readseq': utils/scorecontigs.c:81:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/scorecontigs.c: In function 'cntlets': utils/scorecontigs.c:55:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/Glue utils/Glue.cpp utils/fa2xfa.c: In function 'print': utils/fa2xfa.c:81:36: warning: unused variable 'j' [-Wunused-variable] utils/fa2xfa.c:81:14: warning: unused variable 'pos' [-Wunused-variable] utils/fa2xfa.c: In function 'main': utils/fa2xfa.c:117:1: warning: control reaches end of non-void function [-Wreturn-type] utils/fa2xfa.c: In function 'readfile': utils/fa2xfa.c:55:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/fa2xfa.c: In function 'getLength': utils/fa2xfa.c:30:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/dotplot utils/dotplot.cpp utils/contigorder.c: In function 'solveOrder': utils/contigorder.c:253:17: warning: 'bestRange' may be used uninitialized in this function [-Wuninitialized] utils/contigorder.c:244:9: warning: 'bestState' may be used uninitialized in this function [-Wuninitialized] utils/fa2xfa.c: In function 'readfile': utils/fa2xfa.c:74:8: warning: 'ch' may be used uninitialized in this function [-Wuninitialized] utils/getcontigpos.c: In function 'print': utils/getcontigpos.c:66:46: warning: unused variable 'j' [-Wunused-variable] utils/getcontigpos.c:66:33: warning: unused variable 'written' [-Wunused-variable] utils/getcontigpos.c: In function 'main': utils/getcontigpos.c:94:1: warning: control reaches end of non-void function [-Wreturn-type] utils/getcontigpos.c: In function 'readfile': utils/getcontigpos.c:41:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/getcontigpos.c: In function 'getLength': utils/getcontigpos.c:16:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] utils/dotplot.cpp: In function 'int main(int, char**)': utils/dotplot.cpp:6:27: warning: variable 'pa' set but not used [-Wunused-but-set-variable] utils/dotplot.cpp:6:31: warning: variable 'pb' set but not used [-Wunused-but-set-variable] utils/dotplot.cpp:37:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] utils/dotplot.cpp:74:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] utils/dotplot.cpp:97:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -o ../utils/overlay utils/overlay.c skiplist.c: In function 'printSLE': skiplist.c:12:3: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat] skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] utils/getcontigpos.c: In function 'readfile': utils/getcontigpos.c:59:8: warning: 'ch' may be used uninitialized in this function [-Wuninitialized] utils/overlay.c: In function 'read_align': utils/overlay.c:119:5: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] utils/overlay.c:120:7: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] utils/overlay.c:101:30: warning: unused variable 'tt' [-Wunused-variable] utils/overlay.c: In function 'read_sequences': utils/overlay.c:176:19: warning: unused variable 'breaker' [-Wunused-variable] utils/overlay.c:176:13: warning: unused variable 'kmer' [-Wunused-variable] utils/overlay.c:176:10: warning: unused variable 'j' [-Wunused-variable] utils/overlay.c: In function 'main': utils/overlay.c:232:16: warning: unused variable 'test' [-Wunused-variable] utils/overlay.c:232:9: warning: unused variable 'ttree' [-Wunused-variable] utils/overlay.c:231:7: warning: unused variable 'moved' [-Wunused-variable] utils/overlay.c:230:8: warning: unused variable 'string_tree' [-Wunused-variable] utils/overlay.c: In function 'read_align': utils/overlay.c:109:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] mlagan.c: In function 'buildTree': mlagan.c:652:11: warning: 'mlj' may be used uninitialized in this function [-Wuninitialized] mlagan.c:646:11: warning: 'mli' may be used uninitialized in this function [-Wuninitialized] utils/Glue.cpp: In function 'void readScoreMatrix(char*)': utils/Glue.cpp:33:15: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] utils/Glue.cpp: In function 'void calculateScoreMatrix(int)': utils/Glue.cpp:60:17: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] utils/Glue.cpp:68:44: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] utils/Glue.cpp: In function 'int countLets(SafeVector&)': utils/Glue.cpp:228:74: warning: suggest parentheses around '&&' within '||' [-Wparentheses] utils/Glue.cpp: In function 'int main(int, char**)': utils/Glue.cpp:372:19: warning: variable 'end1' set but not used [-Wunused-but-set-variable] diagmatrix.c: In function 'DMsetPtr': diagmatrix.c:155:8: warning: unused variable 'res' [-Wunused-variable] diagmatrix.c:154:19: warning: unused variable 'loc' [-Wunused-variable] utils/Glue.cpp: In function 'void readScoreMatrix(char*)': utils/Glue.cpp:40:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] utils/Glue.cpp:48:37: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] utils/Glue.cpp:50:30: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] utils/Glue.cpp:55:44: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] multial.c: In function 'getAnchsFromAlign': multial.c:104:9: warning: unused variable 'peakfrac' [-Wunused-variable] multial.c:103:19: warning: unused variable 'isfrst' [-Wunused-variable] multial.c:99:30: warning: unused variable 'peakscore' [-Wunused-variable] multial.c:99:20: warning: unused variable 'oldscore' [-Wunused-variable] multial.c: In function 'unifyAlign': multial.c:188:28: warning: unused variable 'tgc' [-Wunused-variable] multial.c:188:23: warning: unused variable 'tgs' [-Wunused-variable] multial.c:187:19: warning: unused variable 'brcount' [-Wunused-variable] multial.c:187:14: warning: unused variable 'cbc' [-Wunused-variable] multial.c: In function 'getChain': multial.c:247:7: warning: unused variable 'temp' [-Wunused-variable] multial.c: In function 'saveNeck': multial.c:358:6: warning: unused variable 'second' [-Wunused-variable] multial.c:357:9: warning: unused variable 'first' [-Wunused-variable] multial.c: In function 'joinAligns': multial.c:381:10: warning: unused variable 'n' [-Wunused-variable] multial.c: In function 'openGap': multial.c:594:25: warning: unused variable 'i' [-Wunused-variable] multial.c:594:15: warning: unused variable 'pen' [-Wunused-variable] multial.c: In function 'mkBarrel': multial.c:615:7: warning: unused variable 'incr' [-Wunused-variable] multial.c: In function 'doNW': multial.c:811:20: warning: variable 'oldneck' set but not used [-Wunused-but-set-variable] multial.c:808:8: warning: unused variable 'rh' [-Wunused-variable] multial.c:807:14: warning: unused variable 'b' [-Wunused-variable] multial.c:805:11: warning: unused variable 'prevgap' [-Wunused-variable] multial.c:805:7: warning: unused variable 'tt' [-Wunused-variable] multial.c:804:7: warning: unused variable 'gapend' [-Wunused-variable] multial.c: In function 'removeSeqByName': multial.c:1062:8: warning: variable 'removed' set but not used [-Wunused-but-set-variable] multial.c: In function 'getSeqNum': multial.c:1073:8: warning: unused variable 'removed' [-Wunused-variable] multial.c: In function 'remapHLLs': multial.c:1263:6: warning: suggest parentheses around '&&' within '||' [-Wparentheses] multial.c:1104:43: warning: unused variable 'olen' [-Wunused-variable] multial.c: In function 'hllJoin': multial.c:1352:10: warning: unused variable 'j' [-Wunused-variable] multial.c:1352:7: warning: unused variable 'i' [-Wunused-variable] multial.c: In function 'minHLL': multial.c:1368:10: warning: unused variable 'j' [-Wunused-variable] multial.c: In function 'mergeHLLs': multial.c:1408:10: warning: unused variable 'j' [-Wunused-variable] multial.c:1408:7: warning: unused variable 'i' [-Wunused-variable] multial.c: In function 'printTextAlign': multial.c:1466:7: warning: unused variable 'nlets' [-Wunused-variable] multial.c:1465:13: warning: unused variable 's2' [-Wunused-variable] multial.c:1465:7: warning: unused variable 's1' [-Wunused-variable] multial.c: In function 'printFASTAAlign': multial.c:1525:7: warning: unused variable 'nlets' [-Wunused-variable] multial.c:1524:13: warning: unused variable 's2' [-Wunused-variable] multial.c:1524:7: warning: unused variable 's1' [-Wunused-variable] multial.c: In function 'printXMFAAlign': multial.c:1553:7: warning: unused variable 'nlets' [-Wunused-variable] multial.c:1552:13: warning: unused variable 's2' [-Wunused-variable] multial.c:1552:7: warning: unused variable 's1' [-Wunused-variable] multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'printFASTAAlign': multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'printTextAlign': multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'removeSeqByName': multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'readSubstMatrix': multial.c:478:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] multial.c:486:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] multial.c:487:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] multial.c: In function 'getAnchsFromAlign': multial.c:104:9: warning: unused variable 'peakfrac' [-Wunused-variable] multial.c:103:19: warning: unused variable 'isfrst' [-Wunused-variable] multial.c:99:30: warning: unused variable 'peakscore' [-Wunused-variable] multial.c:99:20: warning: unused variable 'oldscore' [-Wunused-variable] multial.c: In function 'unifyAlign': multial.c:188:28: warning: unused variable 'tgc' [-Wunused-variable] multial.c:188:23: warning: unused variable 'tgs' [-Wunused-variable] multial.c:187:19: warning: unused variable 'brcount' [-Wunused-variable] multial.c:187:14: warning: unused variable 'cbc' [-Wunused-variable] multial.c: In function 'getChain': multial.c:247:7: warning: unused variable 'temp' [-Wunused-variable] multial.c: In function 'saveNeck': multial.c:358:6: warning: unused variable 'second' [-Wunused-variable] multial.c:357:9: warning: unused variable 'first' [-Wunused-variable] multial.c: In function 'joinAligns': multial.c:381:10: warning: unused variable 'n' [-Wunused-variable] multial.c: In function 'scoreLocal': multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'openGap': multial.c:594:25: warning: unused variable 'i' [-Wunused-variable] multial.c:594:15: warning: unused variable 'pen' [-Wunused-variable] multial.c: In function 'mkBarrel': multial.c:615:7: warning: unused variable 'incr' [-Wunused-variable] multial.c: In function 'doNW': multial.c:811:20: warning: variable 'oldneck' set but not used [-Wunused-but-set-variable] multial.c:808:8: warning: unused variable 'rh' [-Wunused-variable] multial.c:807:14: warning: unused variable 'b' [-Wunused-variable] multial.c:805:11: warning: unused variable 'prevgap' [-Wunused-variable] multial.c:805:7: warning: unused variable 'tt' [-Wunused-variable] multial.c:804:7: warning: unused variable 'gapend' [-Wunused-variable] multial.c: In function 'removeSeqByName': multial.c:1062:8: warning: variable 'removed' set but not used [-Wunused-but-set-variable] multial.c: In function 'getSeqNum': multial.c:1073:8: warning: unused variable 'removed' [-Wunused-variable] multial.c: In function 'remapHLLs': multial.c:1263:6: warning: suggest parentheses around '&&' within '||' [-Wparentheses] multial.c:1104:43: warning: unused variable 'olen' [-Wunused-variable] multial.c: In function 'hllJoin': multial.c:1352:10: warning: unused variable 'j' [-Wunused-variable] multial.c:1352:7: warning: unused variable 'i' [-Wunused-variable] multial.c: In function 'minHLL': multial.c:1368:10: warning: unused variable 'j' [-Wunused-variable] multial.c: In function 'mergeHLLs': multial.c:1408:10: warning: unused variable 'j' [-Wunused-variable] multial.c:1408:7: warning: unused variable 'i' [-Wunused-variable] multial.c: In function 'printTextAlign': multial.c:1466:7: warning: unused variable 'nlets' [-Wunused-variable] multial.c:1465:13: warning: unused variable 's2' [-Wunused-variable] multial.c:1465:7: warning: unused variable 's1' [-Wunused-variable] multial.c: In function 'printFASTAAlign': multial.c:1525:7: warning: unused variable 'nlets' [-Wunused-variable] multial.c:1524:13: warning: unused variable 's2' [-Wunused-variable] multial.c:1524:7: warning: unused variable 's1' [-Wunused-variable] multial.c: In function 'printXMFAAlign': multial.c:1553:7: warning: unused variable 'nlets' [-Wunused-variable] multial.c:1552:13: warning: unused variable 's2' [-Wunused-variable] multial.c:1552:7: warning: unused variable 's1' [-Wunused-variable] multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'printFASTAAlign': multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'printTextAlign': multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'removeSeqByName': multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type] multial.c: In function 'readSubstMatrix': multial.c:478:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] multial.c:486:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] multial.c:487:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] multial.c: In function 'scoreLocal': multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type] fchaos.c: In function 'doTranslated': fchaos.c:865:16: warning: 'temp' may be used uninitialized in this function [-Wuninitialized] fchaos.c:832:27: warning: 'currdbase' may be used uninitialized in this function [-Wuninitialized] fchaos.c: In function 'main': fchaos.c:955:16: warning: 'temp' may be used uninitialized in this function [-Wuninitialized] fchaos.c:936:15: warning: 'currdbase' may be used uninitialized in this function [-Wuninitialized] filebuffer.c: In function 'FileRead': filebuffer.c:123:5: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] thrtrie.c: In function 'makeAlpha': thrtrie.c:33:7: warning: array subscript has type 'char' [-Wchar-subscripts] thrtrie.c:35:5: warning: array subscript has type 'char' [-Wchar-subscripts] thrtrie.c: In function 'lookup': thrtrie.c:42:3: warning: array subscript has type 'char' [-Wchar-subscripts] thrtrie.c: In function 'insertString': thrtrie.c:174:10: warning: unused variable 'j' [-Wunused-variable] thrtrie.c: In function 'MPallfree': mempage.c:48:1: warning: control reaches end of non-void function [-Wreturn-type] skiplist.c: In function 'printSLE': skiplist.c:12:3: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat] skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] global.c: In function 'ismatch': global.c:12:3: warning: array subscript has type 'char' [-Wchar-subscripts] global.c:12:3: warning: array subscript has type 'char' [-Wchar-subscripts] global.c: In function 'global': global.c:34:31: warning: unused variable 'score' [-Wunused-variable] global.c: In function 'printalign': global.c:172:1: warning: control reaches end of non-void function [-Wreturn-type] translate.c: In function 'toPeptide': translate.c:9:10: warning: unused variable 'j' [-Wunused-variable] filebuffer.c: In function 'FileRead': filebuffer.c:123:5: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] diagmatrix.c: In function 'DMsetPtr': diagmatrix.c:155:8: warning: unused variable 'res' [-Wunused-variable] diagmatrix.c:154:19: warning: unused variable 'loc' [-Wunused-variable] diagmatrix.c: In function 'DMsetPtr': diagmatrix.c:155:8: warning: unused variable 'res' [-Wunused-variable] diagmatrix.c:154:19: warning: unused variable 'loc' [-Wunused-variable] skiplist.c: In function 'printSLE': skiplist.c:12:3: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat] skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] skiplist.c: In function 'printSLE': skiplist.c:12:3: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat] skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] filebuffer.c: In function 'FileRead': filebuffer.c:123:5: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] filebuffer.c: In function 'FileRead': filebuffer.c:123:5: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] (cd glocal; make) make[2]: Entering directory `/builddir/build/BUILD/lagan20/src/glocal' g++ -Wno-deprecated -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I./ -c glocal.cpp g++ -Wno-deprecated -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I./ -c io.cpp g++ -Wno-deprecated -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I./ -c rightinfluence.cpp g++ -Wno-deprecated -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I./ -c leftinfluence.cpp g++ -Wno-deprecated -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I./ -c score.cpp leftinfluence.cpp: In function 'void InitLI(LI*, long long int)': leftinfluence.cpp:135:22: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] rightinfluence.cpp: In function 'void initRI(RI*, long long int)': rightinfluence.cpp:9:22: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] rightinfluence.cpp: In function 'long long int RICommitEndPoint(RI*, Fragment*)': rightinfluence.cpp:119:85: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] leftinfluence.cpp: In function 'void printState(LI*)': leftinfluence.cpp:619:16: warning: variable 'colCount' set but not used [-Wunused-but-set-variable] leftinfluence.cpp:619:26: warning: variable 'diagCount' set but not used [-Wunused-but-set-variable] leftinfluence.cpp:619:37: warning: variable 'ownerCount' set but not used [-Wunused-but-set-variable] score.cpp: In function 'void createScoreFunctionObjects(char*)': score.cpp:92:106: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] score.cpp: In function 'float scoreAll(Fragment*, Fragment*, long long int)': score.cpp:143:19: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] score.cpp: In function 'float fragmentSetScore(Fragment*, Fragment*, LI*, RI*, long long int)': score.cpp:185:120: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] glocal.cpp: In function 'int main(int, char**)': glocal.cpp:64:16: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] glocal.cpp: In function 'long long int startPointHandler()': glocal.cpp:131:86: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] glocal.cpp:142:87: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] glocal.cpp:120:8: warning: variable 'current_score' set but not used [-Wunused-but-set-variable] glocal.cpp: In function 'long long int endPointHandler()': glocal.cpp:224:88: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] io.cpp: In function 'long long int getline(FILE*, hll*)': io.cpp:60:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] g++ glocal.o io.o rightinfluence.o leftinfluence.o score.o -o ../../glocal -lm make[2]: Leaving directory `/builddir/build/BUILD/lagan20/src/glocal' make[1]: Leaving directory `/builddir/build/BUILD/lagan20/src' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1evYZI + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64 ++ dirname /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64 + cd lagan20 + LANG=C + export LANG + unset DISPLAY + rm -rf /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64 + mkdir -p /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/bin /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + install -m755 chaos /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin + install -m755 mlagan /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin + install -m755 prolagan /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin + install -m755 lagan.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin/lagan + install -m755 slagan.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin/slagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 anal_gloc.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 anchors /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 glocal /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 order /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 rechaos.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 supermap.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 xmfa2mfa.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/bin2bl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/bin2mf /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/cextract /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/cmerge2.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/contigorder /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/cstat /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/dotplot /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/draft.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/fa2xfa /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getbounds /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getcontigpos /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getlength /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getoverlap /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/Glue /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mextract.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mf2bin.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mpretty.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mproject.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mrunfile.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mrunpairs.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mrun.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mviz.pl /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/rc /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/scorealign /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/scorecontigs /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/seqmerge /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/overlay /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan/utils + install -m644 blosum62.txt blosum62s.txt nucmatrix.txt test.score /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64//usr/lib64/lagan + rm -f Readmes/README.FIRST.chris Readmes/README.chaos.chris Readmes/README.lagan.chris Readmes/README.shuffle.chris + /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/lagan20 extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/cextract extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/bin2mf extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/Glue extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/getcontigpos extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/scorecontigs extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/getlength extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/fa2xfa extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/bin2bl extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/getoverlap extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/rc extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/dotplot extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/contigorder extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/getbounds extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/scorealign extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/cstat extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/overlay extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/utils/seqmerge extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/glocal extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/order extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/lib64/lagan/anchors extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin/chaos extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin/mlagan extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/bin/prolagan 674 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: lagan-2.0-7.fc15.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2kh1ks + umask 022 + cd /builddir/build/BUILD + cd lagan20 + DOCDIR=/builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/share/doc/lagan-2.0 + export DOCDIR + rm -rf /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/share/doc/lagan-2.0 + /bin/mkdir -p /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/share/doc/lagan-2.0 + cp -pr Readmes/LICENSE Readmes/README.FIRST Readmes/README.chaos Readmes/README.lagan Readmes/README.mlagan Readmes/README.shuffle Readmes/README.tools sample.fasta sample.params /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64/usr/share/doc/lagan-2.0 + exit 0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/env /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl >= 0:5.005 perl(Cwd) perl(File::Basename) perl(File::Copy) perl(File::Path) perl(Getopt::Long) perl(IO::Handle) perl(IPC::Open2) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: lagan-debuginfo-2.0-7.fc15.x86_64 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64 warning: Could not canonicalize hostname: x86-11.phx2.fedoraproject.org Wrote: /builddir/build/RPMS/lagan-2.0-7.fc15.x86_64.rpm Wrote: /builddir/build/RPMS/lagan-debuginfo-2.0-7.fc15.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.5qqI1I + umask 022 + cd /builddir/build/BUILD + cd lagan20 + rm -rf /builddir/build/BUILDROOT/lagan-2.0-7.fc15.x86_64 + exit 0 Child returncode was: 0 LEAVE do -->