Mock Version: 2.15
Mock Version: 2.15
Mock Version: 2.15
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f36-build-32597780-4402583/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fa367eb8370>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1642809600
Wrote: /builddir/build/SRPMS/staden-io_lib-1.12.4-22.fc36.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/f36-build-32597780-4402583/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fa367eb8370>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1642809600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.4mG5Rv
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf io_lib-1.12.4
+ /usr/bin/gzip -dc /builddir/build/SOURCES/io_lib-1.12.4.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd io_lib-1.12.4
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv io_lib-config.in staden-io_lib-config.in
+ sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in
+ sed -i s/lread/lstaden-read/ staden-io_lib-config.in
+ sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.AACUdE
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh staden-io_lib 1.12.4-22.fc36 x86_64
+ cd io_lib-1.12.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2022-01-22 02:05:41.719428220 +0000
+++ ./configure	2022-01-22 02:05:41.754431304 +0000
@@ -1943,7 +1943,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2022-01-22 02:05:41.754431304 +0000
+++ ./configure	2022-01-22 02:05:41.775433155 +0000
@@ -6307,7 +6307,7 @@
 sympat='\([_A-Za-z][_A-Za-z0-9]*\)'
 
 # Transform an extracted symbol line into a proper C declaration
-lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'"
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 
 # Transform an extracted symbol line into symbol name and symbol address
 lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/  {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/  {\"\2\", (lt_ptr) \&\2},/p'"
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for x86_64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... no
checking whether g++ accepts -g... no
checking dependency style of g++... none
checking for x86_64-redhat-linux-gnu-g77... no
checking for x86_64-redhat-linux-gnu-xlf... no
checking for x86_64-redhat-linux-gnu-f77... no
checking for x86_64-redhat-linux-gnu-frt... no
checking for x86_64-redhat-linux-gnu-pgf77... no
checking for x86_64-redhat-linux-gnu-cf77... no
checking for x86_64-redhat-linux-gnu-fort77... no
checking for x86_64-redhat-linux-gnu-fl32... no
checking for x86_64-redhat-linux-gnu-af77... no
checking for x86_64-redhat-linux-gnu-xlf90... no
checking for x86_64-redhat-linux-gnu-f90... no
checking for x86_64-redhat-linux-gnu-pgf90... no
checking for x86_64-redhat-linux-gnu-pghpf... no
checking for x86_64-redhat-linux-gnu-epcf90... no
checking for x86_64-redhat-linux-gnu-gfortran... no
checking for x86_64-redhat-linux-gnu-g95... no
checking for x86_64-redhat-linux-gnu-xlf95... no
checking for x86_64-redhat-linux-gnu-f95... no
checking for x86_64-redhat-linux-gnu-fort... no
checking for x86_64-redhat-linux-gnu-ifort... no
checking for x86_64-redhat-linux-gnu-ifc... no
checking for x86_64-redhat-linux-gnu-efc... no
checking for x86_64-redhat-linux-gnu-pgf95... no
checking for x86_64-redhat-linux-gnu-lf95... no
checking for x86_64-redhat-linux-gnu-ftn... no
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... no
checking for g95... no
checking for xlf95... no
checking for f95... no
checking for fort... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether  accepts -g... no
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for x86_64-redhat-linux-gnu-ar... no
checking for ar... ar
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for x86_64-redhat-linux-gnu-strip... no
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: 'ld.so.conf.d/*.conf': No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
appending configuration tag "F77" to libtool
host=x86_64-redhat-linux-gnu
Fixing libtool for -rpath problems.
checking for gawk... (cached) gawk
checking for curl-config... /usr/bin/curl-config
checking for the version of libcurl... 7.81.0
checking whether libcurl just needs -lcurl... yes
checking whether libcurl is usable... yes
checking for curl_free... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for library containing gethostbyname... none required
checking for library containing socket... none required
checking whether byte ordering is bigendian... no
checking for ANSI C header files... (cached) yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for unistd.h... (cached) yes
checking for zlib.h... (cached) yes
checking whether byte ordering is bigendian... (cached) no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking for inline... inline
checking for mode_t... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for library containing cos... -lm
checking for strdup... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating io_lib/Makefile
config.status: creating progs/Makefile
config.status: creating tests/Makefile
config.status: creating staden-io_lib-config
config.status: creating io_lib/os.h
config.status: creating io_lib_config.h
config.status: executing depfiles commands
+ sed -i 's+\(search_path_spec="\)+\1/lib64 /usr/lib64 +' libtool
+ make -j6
make  all-recursive
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4'
Making all in io_lib
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c
mkdir .libs
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Read.c  -fPIC -DPIC -o .libs/libstaden_read_la-Read.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_extras.c  -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c compression.c  -fPIC -DPIC -o .libs/libstaden_read_la-compression.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ztr_translate.c  -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ztr.c  -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c translate.c  -fPIC -DPIC -o .libs/libstaden_read_la-translate.o
translate.c: In function 'read2exp':
translate.c:292:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  292 |         if (p = strrchr(EN, '/'))
      |             ^
translate.c:302:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  302 |             if (cp = strrchr(read->trace_name, '/'))
      |                 ^~
translate.c: In function 'exp2read':
translate.c:650:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  650 |         if (fp = open_trace_file(exp_get_entry(e, EFLT_LN), fn)) {
      |             ^~
ztr_translate.c:335:14: warning: 'ztr_encode_confidence_1' defined but not used [-Wunused-function]
  335 | static char *ztr_encode_confidence_1(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~~~~
ztr_translate.c:182:14: warning: 'ztr_encode_samples_T' defined but not used [-Wunused-function]
  182 | static char *ztr_encode_samples_T(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr_translate.c:175:14: warning: 'ztr_encode_samples_G' defined but not used [-Wunused-function]
  175 | static char *ztr_encode_samples_G(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr_translate.c:168:14: warning: 'ztr_encode_samples_C' defined but not used [-Wunused-function]
  168 | static char *ztr_encode_samples_C(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr_translate.c:161:14: warning: 'ztr_encode_samples_A' defined but not used [-Wunused-function]
  161 | static char *ztr_encode_samples_A(ztr_t *z,
      |              ^~~~~~~~~~~~~~~~~~~~
ztr.c: In function 'mfread_ztr':
ztr.c:335:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  335 |     while (chunk = ztr_read_chunk_hdr(fp)) {
      |            ^~~~~
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c
ztr_translate.c: In function 'ztr_encode_samples_4':
ztr_translate.c:29:20: warning: '%s' directive writing up to 255 bytes into a region of size 12 [-Wformat-overflow=]
   29 |         *mdbytes = sprintf(*mdata, "OFFS%c%s", 0, buf) + 1;
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:894,
                 from ztr_translate.c:5:
In function 'sprintf',
    inlined from 'ztr_encode_samples_4' at ztr_translate.c:29:13:
/usr/include/bits/stdio2.h:38:10: note: '__sprintf_chk' output between 6 and 261 bytes into a destination of size 17
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   40 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c deflate_interlaced.c  -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fpoint.c  -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o
deflate_interlaced.c: In function 'calc_bit_lengths':
deflate_interlaced.c:516:9: warning: variable 'map' set but not used [-Wunused-but-set-variable]
  516 |     int map[258];
      |         ^~~
deflate_interlaced.c: In function 'huffman_multi_decode':
deflate_interlaced.c:1760:9: warning: variable 'nc' set but not used [-Wunused-but-set-variable]
 1760 |     int nc;
      |         ^~
deflate_interlaced.c:1759:23: warning: variable 'c' set but not used [-Wunused-but-set-variable]
 1759 |     huffman_codes_t **c;
      |                       ^
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOABI.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOALF.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ctfCompress.c  -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o
seqIOABI.c: In function 'getABIString':
seqIOABI.c:259:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  259 |     if (off = getABIIndexEntryLW(fp, indexO, label, count, 4, &len)) {
      |         ^~~
seqIOABI.c: In function 'mfread_abi':
seqIOABI.c:657:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  657 |                 if (p = strchr(commstrp, '\n'))
      |                     ^
ctfCompress.c: In function 'ctfCompress2':
ctfCompress.c:270:80: warning: format '%d' expects argument of type 'int', but argument 7 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  270 |   printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n",
      |                                                                               ~^
      |                                                                                |
      |                                                                                int
      |                                                                               %ld
ctfCompress.c:270:92: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  270 |   printf ("compress2 : %d zeros in %d bytes, %d < 7 , %d byte, %d short total %d char for %d shrt\n",
      |                                                                                           ~^
      |                                                                                            |
      |                                                                                            int
      |                                                                                           %ld
seqIOABI.c:662:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  662 |             } while(commstrp = p);
      |                     ^~~~~~~~
ctfCompress.c: In function 'ctfCompress3':
ctfCompress.c:607:116: warning: format '%d' expects argument of type 'int', but argument 8 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  607 |     printf (" // compress3:\n//  %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n",
      |                                                                                                                   ~^
      |                                                                                                                    |
      |                                                                                                                    int
      |                                                                                                                   %ld
ctfCompress.c:607:128: warning: format '%d' expects argument of type 'int', but argument 9 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
  607 |     printf (" // compress3:\n//  %d zeros in %d bytes, %d values coded in %d byte, %d bytes, %d short. \n// Total %d char for %d shrt\n",
      |                                                                                                                               ~^
      |                                                                                                                                |
      |                                                                                                                                int
      |                                                                                                                               %ld
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOCTF.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c expFileIO.c  -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOPlain.c  -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o
expFileIO.c: In function 'exp_print_mline':
expFileIO.c:198:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  198 |     if (c = strchr(p, '\n'))
      |         ^
expFileIO.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  207 |         if (c = strchr(p, '\n')) {
      |             ^
expFileIO.c: In function 'opos2str':
expFileIO.c:393:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
  393 |         if (dir == 0)
      |            ^
seqIOPlain.c: In function 'mfread_pln':
seqIOPlain.c:150:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  150 |                     if (p = strchr(type, ' '))
      |                         ^
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c read_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c misc_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o
In file included from ../io_lib/Read.h:44,
                 from read_scf.c:46:
read_scf.c: In function 'read_scf_header':
../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                  ^~
read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC'
   67 |     if (h->magic_number != SCF_MAGIC)                     return -1;
      |                            ^~~~~~~~~
../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                                  ^~
read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC'
   67 |     if (h->magic_number != SCF_MAGIC)                     return -1;
      |                            ^~~~~~~~~
In file included from misc_scf.c:33:
misc_scf.c: In function 'is_scf':
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c write_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o
../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                  ^~
misc_scf.c:151:26: note: in expansion of macro 'SCF_MAGIC'
  151 |             ok = (magic==SCF_MAGIC);
      |                          ^~~~~~~~~
../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                                  ^~
misc_scf.c:151:26: note: in expansion of macro 'SCF_MAGIC'
  151 |             ok = (magic==SCF_MAGIC);
      |                          ^~~~~~~~~
In file included from write_scf.c:60:
write_scf.c: In function 'mfwrite_scf':
../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                  ^~
write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC'
  389 |     scf->header.magic_number = SCF_MAGIC;
      |                                ^~~~~~~~~
../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses]
   45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f')
      |                                                                  ^~
write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC'
  389 |     scf->header.magic_number = SCF_MAGIC;
      |                                ^~~~~~~~~
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sff.c  -fPIC -DPIC -o .libs/libstaden_read_la-sff.o
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf.c  -fPIC -DPIC -o .libs/libstaden_read_la-srf.o
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c
srf.c: In function 'srf_write_cont_hdr':
srf.c:300:24: warning: the comparison will always evaluate as 'true' for the address of 'version' will never be NULL [-Waddress]
  300 |         + (ch->version ? strlen(ch->version) : 0) + 1
      |                        ^
In file included from srf.c:13:
../io_lib/srf.h:25:10: note: 'version' declared here
   25 |     char version[256];
      |          ^~~~~~~
srf.c:301:28: warning: the comparison will always evaluate as 'true' for the address of 'base_caller' will never be NULL [-Waddress]
  301 |         + (ch->base_caller ? strlen(ch->base_caller) : 0) + 1
      |                            ^
../io_lib/srf.h:27:10: note: 'base_caller' declared here
   27 |     char base_caller[256];
      |          ^~~~~~~~~~~
srf.c:302:36: warning: the comparison will always evaluate as 'true' for the address of 'base_caller_version' will never be NULL [-Waddress]
  302 |         + (ch->base_caller_version ? strlen(ch->base_caller_version) : 0) + 1;
      |                                    ^
../io_lib/srf.h:28:10: note: 'base_caller_version' declared here
   28 |     char base_caller_version[256];
      |          ^~~~~~~~~~~~~~~~~~~
srf.c: In function 'srf_write_trace_hdr':
srf.c:466:26: warning: the comparison will always evaluate as 'true' for the address of 'id_prefix' will never be NULL [-Waddress]
  466 |         + (th->id_prefix ? strlen(th->id_prefix) : 0) + 1
      |                          ^
../io_lib/srf.h:35:10: note: 'id_prefix' declared here
   35 |     char id_prefix[256];
      |          ^~~~~~~~~
srf.c: In function 'srf_index_write':
srf.c:976:27: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress]
  976 |         1 + (idx->ch_file ? strlen(idx->ch_file) : 0) +
      |                           ^
../io_lib/srf.h:85:10: note: 'ch_file' declared here
   85 |     char ch_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c:977:27: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress]
  977 |         1 + (idx->th_file ? strlen(idx->th_file) : 0);
      |                           ^
../io_lib/srf.h:86:10: note: 'th_file' declared here
   86 |     char th_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c:1002:9: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress]
 1002 |     if (idx->th_file)
      |         ^~~
../io_lib/srf.h:86:10: note: 'th_file' declared here
   86 |     char th_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c:1006:9: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress]
 1006 |     if (idx->ch_file)
      |         ^~~
../io_lib/srf.h:85:10: note: 'ch_file' declared here
   85 |     char ch_file[PATH_MAX+1];
      |          ^~~~~~~
srf.c: In function 'get_hi_bits':
srf.c:1106:59: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses]
 1106 |     val = (block->data[block->byte]) & (1<<(8-block->bit))-1;
      |                                        ~~~~~~~~~~~~~~~~~~~^~
srf.c:1126:28: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses]
 1126 |         & (1<<(nbits-bnum))-1;
      |           ~~~~~~~~~~~~~~~~~^~
srf.c: In function 'pack_trace_suffix':
srf.c:1383:17: warning: variable 'width' set but not used [-Wunused-but-set-variable]
 1383 |             int width = 0;
      |                 ^~~~~
srf.c: In function 'partial_decode_ztr':
srf.c:1604:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1604 |     while (chunk = ztr_read_chunk_hdr(mf)) {
      |            ^~~~~
srf.c: In function 'srf_find_trace':
srf.c:2025:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2025 |             fread(dpos, 1, item_sz, srf->fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c array.c  -fPIC -DPIC -o .libs/libstaden_read_la-array.o
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c error.c  -fPIC -DPIC -o .libs/libstaden_read_la-error.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c compress.c  -fPIC -DPIC -o .libs/libstaden_read_la-compress.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c files.c  -fPIC -DPIC -o .libs/libstaden_read_la-files.o
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c find.c  -fPIC -DPIC -o .libs/libstaden_read_la-find.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mach-io.c  -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c open_trace_file.c  -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c
open_trace_file.c: In function 'find_file_tar':
open_trace_file.c:143:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  143 |                 if (cp = strchr(path, '\n'))
      |                     ^~
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c
open_trace_file.c: In function 'sff_hash_query':
open_trace_file.c:537:21: warning: assignment to 'FILE **' from incompatible pointer type 'FILE *' [-Wincompatible-pointer-types]
  537 |             hf->afp = hf->hfp = NULL; /* will be closed by our parent */
      |                     ^
open_trace_file.c:530:18: warning: variable 'fp_copy' set but not used [-Wunused-but-set-variable]
  530 |     static FILE *fp_copy = NULL;
      |                  ^~~~~~~
open_trace_file.c: In function 'find_file_sff':
open_trace_file.c:748:14: warning: variable 'nkey' set but not used [-Wunused-but-set-variable]
  748 |     uint32_t nkey, nflows, chdrlen, rhdrlen, dlen, magic;
      |              ^~~~
open_trace_file.c: In function 'find_file_dir':
open_trace_file.c:914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  914 |     if (cp = strrchr(file, '/')) {
      |         ^~
open_trace_file.c: In function 'open_path_mfile':
open_trace_file.c:1087:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1087 |         if (cp = strrchr(relative_path, '/'))
      |             ^~
open_trace_file.c:1089:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1089 |         if (fp = find_file_dir(file, relative_path))
      |             ^~
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c read_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o
open_trace_file.c: In function 'find_file_sff':
open_trace_file.c:798:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  798 |         fread(index_format, 1, 8, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c: In function 'find_file_dir':
open_trace_file.c:929:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  929 |             fread(magic, 1, 4, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c:940:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  940 |                 fread(magic, 1, 8, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c:950:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  950 |                 fread(magic, 1, 5, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c traceType.c  -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c strings.c  -fPIC -DPIC -o .libs/libstaden_read_la-strings.o
open_trace_file.c: In function 'sff_sorted_query':
open_trace_file.c:704:5: warning: 'offset' may be used uninitialized [-Wmaybe-uninitialized]
  704 |     fseek(fp, offset, SEEK_SET);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
open_trace_file.c:595:14: note: 'offset' was declared here
  595 |     uint32_t offset;
      |              ^~~~~~
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c xalloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o
strings.c: In function 'c2fstr':
strings.c:49:5: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation]
   49 |     strncpy(f,c,i);
      |     ^
In file included from strings.c:19:
strings.c:48:18: note: length computed here
   48 |     i = min((int)strlen(c),max_f);
      |                  ^~~~~~~~~
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c
In file included from /usr/include/curl/curl.h:3090,
                 from open_trace_file.c:33:
In function 'find_file_url',
    inlined from 'open_path_mfile' at open_trace_file.c:1054:22:
open_trace_file.c:458:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  458 |     if (0 != curl_easy_setopt(handle, CURLOPT_WRITEFUNCTION, mfwrite))
      |              ^~~~~~~~~~~~~~~~
open_trace_file.c:462:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  462 |     if (0 != curl_easy_setopt(handle, CURLOPT_HEADERFUNCTION, mfwrite))
      |              ^~~~~~~~~~~~~~~~
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c vlen.c  -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o
vlen.c: In function 'vflen':
vlen.c:86:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   86 |             for(; c=*++cp;) {
      |                   ^
vlen.c:57:9: warning: variable 'i' set but not used [-Wunused-but-set-variable]
   57 |     int i;
      |         ^
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_table.c  -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pooled_alloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mFILE.c  -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o
pooled_alloc.c: In function 'new_pool':
pooled_alloc.c:37:11: warning: unused variable 'cp' [-Wunused-variable]
   37 |     char *cp;
      |           ^~
pooled_alloc.c:35:12: warning: unused variable 'i' [-Wunused-variable]
   35 |     size_t i, n = PSIZE / p->dsize;
      |            ^
pooled_alloc.c: In function 'pool_alloc':
pooled_alloc.c:65:12: warning: unused variable 'i' [-Wunused-variable]
   65 |     size_t i;
      |            ^
pooled_alloc.c: In function 'pool_free':
pooled_alloc.c:95:19: warning: unused variable 'i' [-Wunused-variable]
   95 |     size_t psize, i;
      |                   ^
pooled_alloc.c:95:12: warning: unused variable 'psize' [-Wunused-variable]
   95 |     size_t psize, i;
      |            ^~~~~
hash_table.c: In function 'HashFileFopen':
hash_table.c:1140:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1140 |             fread(hf->archives[i], 1, fnamelen, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1156:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1156 |         fread(&hf->headers[i].pos,  8, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1157:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1157 |         fread(&hf->headers[i].size, 4, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1169:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1169 |         fread(&hf->footers[i].pos,  8, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1170:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1170 |         fread(&hf->footers[i].size, 4, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c: In function 'HashFileQuery':
hash_table.c:1368:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1368 |         fread(k, klen, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1369:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1369 |         fread(&headfoot, 1, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1372:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1372 |         fread(&pos, 8, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1376:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1376 |         fread(&size, 4, 1, hf->hfp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c: In function 'HashFileExtract':
hash_table.c:1506:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1506 |         fread(&data[pos], head->size, 1, hf->afp[head->archive_no]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_table.c:1516:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1516 |     fread(&data[pos], hfi.size, 1, hf->afp[hfi.archive]);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c jenkins_lookup3.c  -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o
hash_table.c:1526:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1526 |         fread(&data[pos], foot->size, 1, hf->afp[foot->archive_no]);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mFILE.c: In function 'mfreopen':
mFILE.c:194:16: warning: variable 'w' set but not used [-Wunused-but-set-variable]
  194 |     int r = 0, w = 0, a = 0, b = 0, x = 0, mode = 0;
      |                ^
mFILE.c: In function 'mfflush':
mFILE.c:487:17: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  487 |             if (!mf->mode & MF_MODEX)
      |                 ^~~~~~~~~
mFILE.c:493:9: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result]
  493 |         ftruncate(fileno(mf->fp), ftell(mf->fp));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
jenkins_lookup3.c:654:17: warning: 'hashbig' defined but not used [-Wunused-function]
  654 | static uint32_t hashbig( const void *key, size_t length, uint32_t initval)
      |                 ^~~~~~~
jenkins_lookup3.c:288:17: warning: 'hashlittle' defined but not used [-Wunused-function]
  288 | static uint32_t hashlittle( const void *key, size_t length, uint32_t initval)
      |                 ^~~~~~~~~~
jenkins_lookup3.c:223:13: warning: 'hashword2' defined but not used [-Wunused-function]
  223 | static void hashword2 (
      |             ^~~~~~~~~
jenkins_lookup3.c:179:17: warning: 'hashword' defined but not used [-Wunused-function]
  179 | static uint32_t hashword(
      |                 ^~~~~~~~
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o libstaden-read.la -rpath /usr/lib64 -version-info 2:2:1  libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz  -lcurl -lm 
gcc -shared  .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o  -lz -lcurl -lm -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -m64 -mtune=generic -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2
In function 'find_file_url',
    inlined from 'open_path_mfile' at open_trace_file.c:1054:22:
open_trace_file.c:458:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  458 |     if (0 != curl_easy_setopt(handle, CURLOPT_WRITEFUNCTION, mfwrite))
      |              ^
open_trace_file.c:462:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning]
  462 |     if (0 != curl_easy_setopt(handle, CURLOPT_HEADERFUNCTION, mfwrite))
      |              ^
(cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1)
(cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so)
creating libstaden-read.la
(cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la)
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
Making all in progs
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c convert_trace.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c makeSCF.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c extract_seq.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c extract_qual.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c extract_fastq.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c index_tar.c
extract_fastq.c: In function 'main':
extract_fastq.c:141:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  141 |                     if (cp = strchr(line, '\n'))
      |                         ^~
index_tar.c: In function 'main':
index_tar.c:72:21: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   72 |                     fread(member, 1, size > 256 ? 256 : size, fp);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
index_tar.c:82:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   82 |                 fread(member, 1, size > 256 ? 256 : size, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
extract_qual.c: In function 'main':
extract_qual.c:317:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  317 |                     if (cp = strchr(line, '\n'))
      |                         ^~
extract_seq.c: In function 'main':
extract_seq.c:199:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  199 |                     if (cp = strchr(line, '\n'))
      |                         ^~
convert_trace.c:16:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=]
   16 | static char const rcsid[] = "$Id: convert_trace.c,v 1.12 2008-02-20 16:07:44 jkbonfield Exp $";
      |                   ^~~~~
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_dump.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_info.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_update.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c get_comment.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_tar.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_extract.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_list.c
hash_tar.c: In function 'load_map':
hash_tar.c:78:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration]
   78 |     close(fp);
      |     ^~~~~
      |     pclose
hash_tar.c: In function 'main':
hash_tar.c:273:11: warning: unused variable 'fp' [-Wunused-variable]
  273 |     FILE *fp;
      |           ^~
hash_tar.c: In function 'accumulate':
hash_tar.c:136:21: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  136 |                     fread(member, 1, size > 256 ? 256 : size, fp);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_tar.c:146:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  146 |                 fread(member, 1, size > 256 ? 256 : size, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hash_tar.c:204:1: warning: control reaches end of non-void function [-Wreturn-type]
  204 | }
      | ^
hash_extract.c: In function 'extract':
hash_extract.c:20:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   20 |     if (data = HashFileExtract(hf, file, &len)) {
      |         ^~~~
hash_extract.c: In function 'main':
hash_extract.c:74:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   74 |             if (c = strchr(file, '\n'))
      |                 ^
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c trace_dump.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_sff.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c append_sff.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ztr_dump.c
hash_sff.c: In function 'main':
hash_sff.c:207:20: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  207 |             while (len = fread(block, 1, 8192, fp)) {
      |                    ^~~
hash_sff.c:230:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  230 |             fread(hdr, 1, 31, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~
hash_sff.c:258:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  258 |             fread(hdr, 1, 31, fpout);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
append_sff.c: In function 'main':
append_sff.c:116:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  116 |     fread(chdr, 1, 31, fpout);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
convert_trace.c: In function 'main':
convert_trace.c:743:37: warning: '%s' directive writing up to 8191 bytes into a region of size 2042 [-Wformat-overflow=]
  724 |             infname = line2;
      |                       ~~~~~          
......
  743 |                 sprintf(buf, "ERROR %s", infname);
      |                                     ^~
In file included from /usr/include/stdio.h:894,
                 from convert_trace.c:5:
In function 'sprintf',
    inlined from 'main' at convert_trace.c:743:3:
/usr/include/bits/stdio2.h:38:10: note: '__sprintf_chk' output between 7 and 8198 bytes into a destination of size 2048
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   40 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_dump_all.c
hash_tar.c: In function 'main':
hash_tar.c:327:41: warning: 'hf' may be used uninitialized [-Wmaybe-uninitialized]
  327 |                 realloc(hf->headers, (hf->nheaders+1) *
      |                                       ~~^~~~~~~~~~
hash_tar.c:274:15: note: 'hf' was declared here
  274 |     HashFile *hf;
      |               ^~
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_index_hash.c
srf_dump_all.c: In function 'dump_solexa':
srf_dump_all.c:309:57: warning: pointer targets in passing argument 3 of 'dump_conf4_solexa' differ in signedness [-Wpointer-sign]
  309 |         dump_conf4_solexa(files[1], seq, chunks[0]->data+1, chunks[0]->dlength-1);
      |                                          ~~~~~~~~~~~~~~~^~
      |                                                         |
      |                                                         char *
srf_dump_all.c:227:58: note: expected 'signed char *' but argument is of type 'char *'
  227 | void dump_conf4_solexa(FILE *fp, char *seq, signed char *bytes, int nbytes) {
      |                                             ~~~~~~~~~~~~~^~~~~
srf_dump_all.c:320:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign]
  320 |                                      chunks[i]->data+2, chunks[i]->dlength-2);
      |                                      ~~~~~~~~~~~~~~~^~
      |                                                     |
      |                                                     char *
srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *'
  195 |                           int baseline, unsigned char *bytes, int nbytes) {
      |                                         ~~~~~~~~~~~~~~~^~~~~
srf_dump_all.c:333:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign]
  333 |                                      chunks[i]->data+2, chunks[i]->dlength-2);
      |                                      ~~~~~~~~~~~~~~~^~
      |                                                     |
      |                                                     char *
srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *'
  195 |                           int baseline, unsigned char *bytes, int nbytes) {
      |                                         ~~~~~~~~~~~~~~~^~~~~
srf_dump_all.c:346:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign]
  346 |                                      chunks[i]->data+2, chunks[i]->dlength-2);
      |                                      ~~~~~~~~~~~~~~~^~
      |                                                     |
      |                                                     char *
srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *'
  195 |                           int baseline, unsigned char *bytes, int nbytes) {
      |                                         ~~~~~~~~~~~~~~~^~~~~
srf_dump_all.c: In function 'read_filter_from_file':
srf_dump_all.c:484:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable]
  484 |     long  lStartPos;              /* Offset of start of current line */
      |           ^~~~~~~~~
srf_dump_all.c:483:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable]
  483 |     long  lLineLen;               /* Current line length */
      |           ^~~~~~~~
srf_dump_all.c:506:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  506 |     fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_extract_linear.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_extract_hash.c
srf_index_hash.c: In function 'main':
srf_index_hash.c:138:5: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result]
  138 |     ftruncate(fileno(srf->fp), ftello(srf->fp));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf2fastq.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf2fasta.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_filter.c
srf2fastq.c: In function 'ztr2fastq':
srf2fastq.c:369:17: warning: variable 'start' set but not used [-Wunused-but-set-variable]
  369 |             int start, length;
      |                 ^~~~~
srf2fastq.c:480:21: warning: variable 'start' set but not used [-Wunused-but-set-variable]
  480 |                 int start, length;
      |                     ^~~~~
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_info.c
gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_list.c
srf_info.c: In function 'partial_decode_ztr2':
srf_info.c:411:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  411 |     while (chunk = ztr_read_chunk_hdr(mf)) {
      |            ^~~~~
srf_filter.c: In function 'read_filter_from_file':
srf_filter.c:164:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable]
  164 |     long  lStartPos;              /* Offset of start of current line */
      |           ^~~~~~~~~
srf_filter.c:163:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable]
  163 |     long  lLineLen;               /* Current line length */
      |           ^~~~~~~~
srf_filter.c: In function 'dump_read_filter':
srf_filter.c:457:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=]
  457 |                 printf("\tread[%d] = %s\n", hi->data.i, hi->key);
      |                                ~^           ~~~~~~~~~~
      |                                 |                   |
      |                                 int                 uint64_t {aka long unsigned int}
      |                                %ld
srf_filter.c: In function 'add_readpair_region':
srf_filter.c:587:16: warning: pointer targets in assignment from 'unsigned char *' to 'char *' differ in signedness [-Wpointer-sign]
  587 |     c.data     = data;
      |                ^
srf_filter.c: In function 'srf_filter':
srf_filter.c:699:24: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  699 |                 while (chunk = ztr_read_chunk_hdr(in_srf->mf)) {
      |                        ^~~~~
srf_filter.c:788:23: warning: left-hand operand of comma expression has no effect [-Wunused-value]
  788 |                 stderr, "Error making trace header.\nExiting.\n";
      |                       ^
srf_filter.c:788:23: warning: statement with no effect [-Wunused-value]
srf_filter.c:794:73: warning: pointer targets in passing argument 3 of 'srf_construct_trace_hdr' differ in signedness [-Wpointer-sign]
  794 |             srf_construct_trace_hdr(&out_srf->th, in_srf->th.id_prefix, trace_hdr, trace_hdr_size);
      |                                                                         ^~~~~~~~~
      |                                                                         |
      |                                                                         char *
In file included from srf_filter.c:47:
../io_lib/srf.h:146:57: note: expected 'unsigned char *' but argument is of type 'char *'
  146 |                                          unsigned char *header,
      |                                          ~~~~~~~~~~~~~~~^~~~~~
srf_filter.c:894:24: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  894 |                 while (chunk = ztr_read_chunk_hdr(in_srf->mf)) {
      |                        ^~~~~
srf_filter.c:980:92: warning: pointer targets in passing argument 4 of 'srf_construct_trace_body' differ in signedness [-Wpointer-sign]
  980 |                 srf_construct_trace_body(&new_tb, name+strlen(in_srf->th.id_prefix), -1, mf->data, mf->size, old_tb.flags);
      |                                                                                          ~~^~~~~~
      |                                                                                            |
      |                                                                                            char *
../io_lib/srf.h:155:59: note: expected 'unsigned char *' but argument is of type 'char *'
  155 |                                            unsigned char *body,
      |                                            ~~~~~~~~~~~~~~~^~~~
srf_filter.c: In function 'read_filter_from_file':
srf_filter.c:186:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  186 |     fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o convert_trace  convert_trace.o ../io_lib/libstaden-read.la -lm 
srf_list.c: In function 'count_file':
srf_list.c:75:19: warning: unused variable 'data' [-Wunused-variable]
   75 |     unsigned char data[16];
      |                   ^~~~
srf_list.c:74:22: warning: unused variable 'i' [-Wunused-variable]
   74 |     int item_sz = 9, i;
      |                      ^
srf_list.c:73:11: warning: variable 'ipos' set but not used [-Wunused-but-set-variable]
   73 |     off_t ipos, skip;
      |           ^~~~
srf_list.c:72:13: warning: unused variable 'count' [-Wunused-variable]
   72 |     int64_t count = 0;
      |             ^~~~~
srf_list.c: In function 'main':
srf_list.c:158:26: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=]
  158 |             printf("%s: %d sequences\n", argv[i], c);
      |                         ~^                        ~
      |                          |                        |
      |                          int                      int64_t {aka long int}
      |                         %ld
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o makeSCF  makeSCF.o ../io_lib/libstaden-read.la -lm 
srf_dump_all.c:566:49: warning: '%s' directive argument is null [-Wformat-overflow=]
  566 |                     fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine);
      |                                                 ^~
srf_dump_all.c:555:51: warning: '%s' directive argument is null [-Wformat-overflow=]
  555 |                     fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine);
      |                                                   ^~
srf2fastq.c:366:26: warning: 'regn' may be used uninitialized [-Wmaybe-uninitialized]
  366 |              iregion<regn->nregions && iregion<MAX_REGIONS;
      |                      ~~~~^~~~~~~~~~
srf2fastq.c:248:13: note: 'regn' was declared here
  248 |     regn_t *regn;
      |             ^~~~
mkdir .libs
srf_filter.c:246:49: warning: '%s' directive argument is null [-Wformat-overflow=]
  246 |                     fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine);
      |                                                 ^~
srf_filter.c:235:51: warning: '%s' directive argument is null [-Wformat-overflow=]
  235 |                     fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine);
      |                                                   ^~
srf_dump_all.c: In function 'get_read_filter':
srf_dump_all.c:651:41: warning: '%s' directive argument is null [-Wformat-overflow=]
  651 |             fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value);
      |                                         ^~
srf_dump_all.c:640:43: warning: '%s' directive argument is null [-Wformat-overflow=]
  640 |             fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value);
      |                                           ^~
srf_dump_all.c:622:46: warning: '%s' directive argument is null [-Wformat-overflow=]
  622 |             fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value);
      |                                              ^~
srf_filter.c: In function 'get_read_filter':
srf_filter.c:348:41: warning: '%s' directive argument is null [-Wformat-overflow=]
  348 |             fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value);
      |                                         ^~
srf_filter.c:337:43: warning: '%s' directive argument is null [-Wformat-overflow=]
  337 |             fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value);
      |                                           ^~
srf_filter.c:319:46: warning: '%s' directive argument is null [-Wformat-overflow=]
  319 |             fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value);
      |                                              ^~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/convert_trace convert_trace.o  ../io_lib/.libs/libstaden-read.so -lm
srf_dump_all.c: In function 'process_srf_to_text_files':
srf_dump_all.c:940:20: warning: '/s_' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
  940 |     sprintf(fn, "%s/s_%d_%04d_dump.txt", dir, lane, tile);
      |                    ^~~
In file included from /usr/include/stdio.h:894,
                 from srf_dump_all.c:37:
In function 'sprintf',
    inlined from 'fopen_text' at srf_dump_all.c:940:5,
    inlined from 'process_srf_to_text_files' at srf_dump_all.c:988:14:
/usr/include/bits/stdio2.h:38:10: note: '__sprintf_chk' output between 19 and 1059 bytes into a destination of size 1024
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   40 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o extract_seq  extract_seq.o ../io_lib/libstaden-read.la -lm 
srf_filter.c: In function 'srf_filter':
srf_filter.c:833:19: warning: 'output_trace_header' may be used uninitialized [-Wmaybe-uninitialized]
  833 |                 if( output_trace_header ) {
      |                   ^
srf_filter.c:613:9: note: 'output_trace_header' was declared here
  613 |     int output_trace_header;
      |         ^~~~~~~~~~~~~~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/makeSCF makeSCF.o  ../io_lib/.libs/libstaden-read.so -lm
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o extract_qual  extract_qual.o ../io_lib/libstaden-read.la -lm 
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o extract_fastq  extract_fastq.o ../io_lib/libstaden-read.la -lm 
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o index_tar  index_tar.o  -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/extract_seq extract_seq.o  ../io_lib/.libs/libstaden-read.so -lm
creating convert_trace
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o scf_dump  scf_dump.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/extract_fastq extract_fastq.o  ../io_lib/.libs/libstaden-read.so -lm
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/extract_qual extract_qual.o  ../io_lib/.libs/libstaden-read.so -lm
creating makeSCF
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o scf_info  scf_info.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o index_tar index_tar.o  -lm
creating extract_seq
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o scf_update  scf_update.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/scf_dump scf_dump.o  ../io_lib/.libs/libstaden-read.so -lm
creating extract_fastq
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o get_comment  get_comment.o ../io_lib/libstaden-read.la -lm 
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o hash_tar  hash_tar.o ../io_lib/libstaden-read.la -lm 
creating extract_qual
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o hash_extract  hash_extract.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/scf_info scf_info.o  ../io_lib/.libs/libstaden-read.so -lm
creating scf_dump
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/scf_update scf_update.o  ../io_lib/.libs/libstaden-read.so -lm
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o hash_list  hash_list.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/get_comment get_comment.o  ../io_lib/.libs/libstaden-read.so -lm
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/hash_tar hash_tar.o  ../io_lib/.libs/libstaden-read.so -lm
creating scf_info
creating scf_update
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o trace_dump  trace_dump.o ../io_lib/libstaden-read.la -lm 
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o hash_sff  hash_sff.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/hash_extract hash_extract.o  ../io_lib/.libs/libstaden-read.so -lm
creating get_comment
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/hash_list hash_list.o  ../io_lib/.libs/libstaden-read.so -lm
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o append_sff  append_sff.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/trace_dump trace_dump.o  ../io_lib/.libs/libstaden-read.so -lm
creating hash_extract
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o ztr_dump  ztr_dump.o ../io_lib/libstaden-read.la -lm 
creating hash_tar
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf_dump_all  srf_dump_all.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/hash_sff hash_sff.o  ../io_lib/.libs/libstaden-read.so -lm
creating hash_list
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf_index_hash  srf_index_hash.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/append_sff append_sff.o  ../io_lib/.libs/libstaden-read.so -lm
creating trace_dump
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf_extract_linear  srf_extract_linear.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/ztr_dump ztr_dump.o  ../io_lib/.libs/libstaden-read.so -lm
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf_dump_all srf_dump_all.o  ../io_lib/.libs/libstaden-read.so -lm
creating hash_sff
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf_extract_hash  srf_extract_hash.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf_index_hash srf_index_hash.o  ../io_lib/.libs/libstaden-read.so -lm
creating append_sff
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf2fastq  srf2fastq.o ../io_lib/libstaden-read.la -lm 
creating ztr_dump
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf2fasta  srf2fasta.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf_extract_linear srf_extract_linear.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_index_hash
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf_filter  srf_filter.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf_extract_hash srf_extract_hash.o  ../io_lib/.libs/libstaden-read.so -lm
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf2fastq srf2fastq.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_extract_linear
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf_info  srf_info.o ../io_lib/libstaden-read.la -lm 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf2fasta srf2fasta.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf_extract_hash
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf_filter srf_filter.o  ../io_lib/.libs/libstaden-read.so -lm
/bin/sh ../libtool --tag=CC --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o srf_list  srf_list.o ../io_lib/libstaden-read.la -lm 
creating srf_dump_all
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf_info srf_info.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf2fasta
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld -o .libs/srf_list srf_list.o  ../io_lib/.libs/libstaden-read.so -lm
creating srf2fastq
creating srf_list
creating srf_info
creating srf_filter
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
Making all in tests
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4'
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tnjXeM
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64
++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/io_lib-1.12.4/.package_note-staden-io_lib-1.12.4-22.fc36.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd io_lib-1.12.4
+ rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64
+ make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64
Making install in io_lib
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
test -z "/usr/lib64" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/lib64"
 /bin/sh ../libtool --mode=install /usr/bin/install -c  'libstaden-read.la' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/lib64/libstaden-read.la'
/usr/bin/install -c .libs/libstaden-read.so.1.1.2 /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/lib64/libstaden-read.so.1.1.2
(cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; })
(cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/lib64 && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; })
/usr/bin/install -c .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/lib64/libstaden-read.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib'
Making install in progs
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin"
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'convert_trace' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/convert_trace'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/convert_trace
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'makeSCF' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/makeSCF'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/makeSCF
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_seq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_seq'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_seq
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_qual' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_qual'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_qual
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'extract_fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_fastq'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_fastq
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'index_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/index_tar'
/usr/bin/install -c index_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/index_tar
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_dump'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_dump
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_info'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_info
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'scf_update' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_update'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_update
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'get_comment' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/get_comment'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/get_comment
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_tar'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_tar
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_extract' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_extract'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_extract
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_list'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_list
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'trace_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/trace_dump'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/trace_dump
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'hash_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_sff'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_sff
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'append_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/append_sff'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/append_sff
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'ztr_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/ztr_dump'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/ztr_dump
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_dump_all' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_dump_all'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_dump_all
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_index_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_index_hash'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_index_hash
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_linear' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_extract_linear'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_extract_linear
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_extract_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_extract_hash'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_extract_hash
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf2fastq'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf2fastq
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf2fasta' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf2fasta'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf2fasta
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_filter' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_filter'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_filter
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_info'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_info
  /bin/sh ../libtool --mode=install /usr/bin/install -c 'srf_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_list'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
/usr/bin/install -c .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_list
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs'
Making install in tests
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests'
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4'
test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin"
 /usr/bin/install -c 'staden-io_lib-config' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/staden-io_lib-config'
test -z "/usr/share/man/man1" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man1"
 /usr/bin/install -c -m 644 './man/man1/srf_index_hash.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man1/srf_index_hash.1'
 /usr/bin/install -c -m 644 './man/man1/srf_info.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man1/srf_info.1'
 /usr/bin/install -c -m 644 './man/man1/srf_list.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man1/srf_list.1'
 /usr/bin/install -c -m 644 './man/man1/srf2fasta.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man1/srf2fasta.1'
 /usr/bin/install -c -m 644 './man/man1/srf2fastq.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man1/srf2fastq.1'
test -z "/usr/share/man/man3" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3"
 /usr/bin/install -c -m 644 './man/man3/read_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/read_scf_header.3'
 /usr/bin/install -c -m 644 './man/man3/read_allocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/read_allocate.3'
 /usr/bin/install -c -m 644 './man/man3/ExperimentFile.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/ExperimentFile.3'
 /usr/bin/install -c -m 644 './man/man3/write_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/write_reading.3'
 /usr/bin/install -c -m 644 './man/man3/write_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/write_scf.3'
 /usr/bin/install -c -m 644 './man/man3/read_deallocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/read_deallocate.3'
 /usr/bin/install -c -m 644 './man/man3/fwrite_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/fwrite_reading.3'
 /usr/bin/install -c -m 644 './man/man3/read2scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/read2scf.3'
 /usr/bin/install -c -m 644 './man/man3/scf2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/scf2read.3'
 /usr/bin/install -c -m 644 './man/man3/fwrite_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/fwrite_scf.3'
 /usr/bin/install -c -m 644 './man/man3/write_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/write_scf_header.3'
 /usr/bin/install -c -m 644 './man/man3/read_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/read_reading.3'
 /usr/bin/install -c -m 644 './man/man3/read_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/read_scf.3'
 /usr/bin/install -c -m 644 './man/man3/exp2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/exp2read.3'
 /usr/bin/install -c -m 644 './man/man3/fread_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/fread_reading.3'
 /usr/bin/install -c -m 644 './man/man3/read2exp.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/read2exp.3'
 /usr/bin/install -c -m 644 './man/man3/fread_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man3/fread_scf.3'
test -z "/usr/share/man/man4" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man4"
 /usr/bin/install -c -m 644 './man/man4/Read.4' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/man/man4/Read.4'
test -z "/usr/include/io_lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib"
 /usr/bin/install -c -m 644 'io_lib/Read.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/Read.h'
 /usr/bin/install -c -m 644 'io_lib/scf_extras.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/scf_extras.h'
 /usr/bin/install -c -m 644 'io_lib/translate.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/translate.h'
 /usr/bin/install -c -m 644 'io_lib/abi.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/abi.h'
 /usr/bin/install -c -m 644 'io_lib/fpoint.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/fpoint.h'
 /usr/bin/install -c -m 644 'io_lib/seqIOABI.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/seqIOABI.h'
 /usr/bin/install -c -m 644 'io_lib/alf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/alf.h'
 /usr/bin/install -c -m 644 'io_lib/seqIOCTF.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/seqIOCTF.h'
 /usr/bin/install -c -m 644 'io_lib/expFileIO.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/expFileIO.h'
 /usr/bin/install -c -m 644 'io_lib/plain.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/plain.h'
 /usr/bin/install -c -m 644 'io_lib/scf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/scf.h'
 /usr/bin/install -c -m 644 'io_lib/sff.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/sff.h'
 /usr/bin/install -c -m 644 'io_lib/array.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/array.h'
 /usr/bin/install -c -m 644 'io_lib/compress.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/compress.h'
 /usr/bin/install -c -m 644 'io_lib/error.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/error.h'
 /usr/bin/install -c -m 644 'io_lib/mach-io.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/mach-io.h'
 /usr/bin/install -c -m 644 'io_lib/misc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/misc.h'
 /usr/bin/install -c -m 644 'io_lib/open_trace_file.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/open_trace_file.h'
 /usr/bin/install -c -m 644 'io_lib/tar_format.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/tar_format.h'
 /usr/bin/install -c -m 644 'io_lib/traceType.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/traceType.h'
 /usr/bin/install -c -m 644 'io_lib/xalloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/xalloc.h'
 /usr/bin/install -c -m 644 'io_lib/mFILE.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/mFILE.h'
 /usr/bin/install -c -m 644 'io_lib/stdio_hack.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/stdio_hack.h'
 /usr/bin/install -c -m 644 'io_lib/vlen.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/vlen.h'
 /usr/bin/install -c -m 644 'io_lib/hash_table.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/hash_table.h'
 /usr/bin/install -c -m 644 'io_lib/jenkins_lookup3.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/jenkins_lookup3.h'
 /usr/bin/install -c -m 644 'io_lib/os.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/os.h'
 /usr/bin/install -c -m 644 'io_lib/compression.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/compression.h'
 /usr/bin/install -c -m 644 'io_lib/ztr.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/ztr.h'
 /usr/bin/install -c -m 644 'io_lib/deflate_interlaced.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/deflate_interlaced.h'
 /usr/bin/install -c -m 644 'io_lib/srf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/srf.h'
 /usr/bin/install -c -m 644 'io_lib/pooled_alloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/pooled_alloc.h'
 /usr/bin/install -c -m 644 'io_lib_config.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/include/io_lib/io_lib_config.h'
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4'
+ find /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64 -name '*.la' -exec rm -f '{}' ';'
+ /usr/bin/find-debuginfo -j6 --strict-build-id -m -i --build-id-seed 1.12.4-22.fc36 --unique-debug-suffix -1.12.4-22.fc36.x86_64 --unique-debug-src-base staden-io_lib-1.12.4-22.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/io_lib-1.12.4
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/append_sff
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_fastq
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_qual
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/get_comment
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/convert_trace
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/extract_seq
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_extract
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_tar
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_list
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/makeSCF
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/index_tar
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/hash_sff
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_dump
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_info
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/scf_update
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf2fasta
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf2fastq
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_dump_all
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_extract_hash
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_extract_linear
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_filter
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_index_hash
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_info
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/srf_list
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/trace_dump
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/bin/ztr_dump
extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/lib64/libstaden-read.so.1.1.2
original debug info size: 1696kB, size after compression: 1556kB
/usr/bin/sepdebugcrcfix: Updated 27 CRC32s, 0 CRC32s did match.
1828 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/staden-io_lib-config from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: staden-io_lib-1.12.4-22.fc36.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.cLe4wL
+ umask 022
+ cd /builddir/build/BUILD
+ cd io_lib-1.12.4
+ DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/doc/staden-io_lib
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/doc/staden-io_lib
+ cp -pr README /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/doc/staden-io_lib
+ cp -pr COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/doc/staden-io_lib
+ cp -pr CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/doc/staden-io_lib
+ cp -pr docs/ /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64/usr/share/doc/staden-io_lib
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libstaden-read.so.1()(64bit) staden-io_lib = 1.12.4-22.fc36 staden-io_lib(x86-64) = 1.12.4-22.fc36
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcurl.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.29)(64bit) libstaden-read.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: staden-io_lib-devel-1.12.4-22.fc36.x86_64
Provides: staden-io_lib-devel = 1.12.4-22.fc36 staden-io_lib-devel(x86-64) = 1.12.4-22.fc36
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libstaden-read.so.1()(64bit)
Processing files: staden-io_lib-debugsource-1.12.4-22.fc36.x86_64
Provides: staden-io_lib-debugsource = 1.12.4-22.fc36 staden-io_lib-debugsource(x86-64) = 1.12.4-22.fc36
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: staden-io_lib-debuginfo-1.12.4-22.fc36.x86_64
Provides: debuginfo(build-id) = 102fbdd84629278321933faf2dc321003eaba61b debuginfo(build-id) = 16a9c9dfd4e67ada66fb4c8bdaacf48071543c2c debuginfo(build-id) = 1acff5f1f7b710584836449547e7db96471eb5bd debuginfo(build-id) = 26ef6a59e28df4c62ab5fc0e75dedcf667e75ada debuginfo(build-id) = 278a2611f6afe4eb0c2c767f16439561edf597a8 debuginfo(build-id) = 2cf8c35c530f7db428b9ec5f734708928753f6ef debuginfo(build-id) = 300787e207229e17e4014b94a1bb88421e7aff5b debuginfo(build-id) = 50bf935b5374630ed0986cf25d23af54e031f037 debuginfo(build-id) = 5279ef1d68df643a05978707a8a448d99b9de86a debuginfo(build-id) = 5cf00c67280c43e2bc638df00c191bf1757ff830 debuginfo(build-id) = 62dc87c7c71998a64e42f6d7d46b46d1949db6ae debuginfo(build-id) = 70ad32f67b95cc821d20f0f964040423b55b98d2 debuginfo(build-id) = 79b42c9341e71afe1933af12e36fa3fcbaedcd76 debuginfo(build-id) = 7d91d39806eb8741ec0a49ebcbdf5f06d96ad224 debuginfo(build-id) = 9721f1ef93810e43d624602730055700a165e16c debuginfo(build-id) = 9ddbe7ba84e14b69bea02eaa9b4216de5198bfb4 debuginfo(build-id) = a3083d50d8afdff5d29fc30517a7c699e4c4ee66 debuginfo(build-id) = a7d0f3984e544d19b9c4b85ed84e19b33492460a debuginfo(build-id) = baab9b95d872271a2dd828821d82d2a1c739faf3 debuginfo(build-id) = bfd491f74c7d13e7893882031179d5e79f43a217 debuginfo(build-id) = c0ae60f26cc3024c73d055d13424861bf3a0f447 debuginfo(build-id) = c93115280750abfaf11a68876a50ceed5cbc8b08 debuginfo(build-id) = cf4d3ca9ea2ee8d04415669c92e8a3982bae9ecb debuginfo(build-id) = e6a670054a4e8adca708fbcc1eb04192f200c429 debuginfo(build-id) = eab646c3cf8d9e19c74fbf62986f3c12e6e1bc1d debuginfo(build-id) = f257b8d973fc169031a912e12ea927ddff4f9051 debuginfo(build-id) = fc13aabb2175495b7bb5eacbc841587de6b75fc1 libstaden-read.so.1.1.2-1.12.4-22.fc36.x86_64.debug()(64bit) staden-io_lib-debuginfo = 1.12.4-22.fc36 staden-io_lib-debuginfo(x86-64) = 1.12.4-22.fc36
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: staden-io_lib-debugsource(x86-64) = 1.12.4-22.fc36
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64
Wrote: /builddir/build/RPMS/staden-io_lib-devel-1.12.4-22.fc36.x86_64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-1.12.4-22.fc36.x86_64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-debugsource-1.12.4-22.fc36.x86_64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-debuginfo-1.12.4-22.fc36.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.WILQsL
+ umask 022
+ cd /builddir/build/BUILD
+ cd io_lib-1.12.4
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-22.fc36.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0