Mock Version: 1.4.13
Mock Version: 1.4.13
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/f30-build-15249824-1091787/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3ff9c564748>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target s390x --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: s390x
Building for target s390x
Wrote: /builddir/build/SRPMS/rdkit-2018.03.4-4.fc30.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/f30-build-15249824-1091787/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3ff9c564748>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target s390x --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: s390x
Building for target s390x
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.qfOGqk
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf rdkit-Release_2018_03_4
+ /usr/bin/mkdir -p rdkit-Release_2018_03_4
+ cd rdkit-Release_2018_03_4
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2018_03_4.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv rdkit-Release_2018_03_4 python3
~/build/BUILD/rdkit-Release_2018_03_4/python3 ~/build/BUILD/rdkit-Release_2018_03_4
+ pushd python3
+ echo 'Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
Patch #0 (rdkit-2015.03-use_cairo_backend_on_tests.patch):
patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py
Hunk #1 succeeded at 169 (offset 71 lines).
Patch #1 (rdkit-2018.03-do_not_install_sping.patch):
+ echo 'Patch #1 (rdkit-2018.03-do_not_install_sping.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 220 (offset 2 lines).
Hunk #2 succeeded at 228 (offset 2 lines).
Patch #2 (rdkit-2018.03-fix_cmake_files_path.patch):
+ echo 'Patch #2 (rdkit-2018.03-fix_cmake_files_path.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 132 (offset 5 lines).
Hunk #2 succeeded at 148 (offset 5 lines).
Patch #5 (rdkit-2018.03-pg-build.patch):
+ echo 'Patch #5 (rdkit-2018.03-pg-build.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file Code/PgSQL/rdkit/CMakeLists.txt
Patch #6 (rdkit-2018.03-pg11-booleans.patch):
+ echo 'Patch #6 (rdkit-2018.03-pg11-booleans.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0
patching file Code/PgSQL/rdkit/bfp_gin.c
patching file Code/PgSQL/rdkit/bfp_gist.c
patching file Code/PgSQL/rdkit/low_gist.c
patching file Code/PgSQL/rdkit/rdkit_gist.c
+ rm -rf rdkit/sping
+ cp -pr license.txt ReleaseNotes.md ../
+ popd
~/build/BUILD/rdkit-Release_2018_03_4
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python3|'
+ find python3 -name '*.py'
+ find python3 -name test_list.py
+ xargs sed -i 's/"python"/"python3"/g'
+ find python3 -name test_list.py
+ xargs sed -i 's/'\''python'\''/'\''python3'\''/g'
+ sed -i.orig s/python/python3/g python3/Projects/DbCLI/TestDbCLI.py
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.RMab1t
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_4
~/build/BUILD/rdkit-Release_2018_03_4/python3 ~/build/BUILD/rdkit-Release_2018_03_4
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed'
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed'
+ pushd python3
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python37 -D RDK_OPTIMIZE_NATIVE:BOOL=OFF .
-- The C compiler identification is GNU 9.0.1
-- The CXX compiler identification is GNU 9.0.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - big endian
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found PythonInterp: /usr/bin/python3 (found version "3.7.2") 
-- Found PythonLibs: /usr/lib64/libpython3.7m.so (found version "3.7.2") 
BUILDSTDERR: Python Install directory /usr/lib64/python3.7/site-packages
BUILDSTDERR: PYTHON Py_ENABLE_SHARED: 1
BUILDSTDERR: PYTHON USING LINK LINE: -pthread -shared -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.69.0
-- Found the following Boost libraries:
--   serialization
-- Found PostgreSQL: /usr/lib64/libpq.so (found version "11.0") 
BUILDSTDERR: == Using strict rotor definition
-- Found BISON: /usr/bin/bison  
-- Found FLEX: /usr/bin/flex  
BUILDSTDERR: == Updating Filters.cpp from pains file
== Done updating pains files
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.0") 
-- Checking for module 'cairo'
--   Found cairo, version 1.16.0
-- Found Cairo: /usr/include/cairo  
BUILDSTDERR: Skipping build of SimDivPickers on big endian system
BUILDSTDERR: Skipping build of clustering and cmim libraries on big endian system
BUILDSTDERR: postgres: /usr/include;/usr/include/pgsql/server
BUILDSTDERR: =====================================================================
BUILDSTDERR: After building, check
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: for correctness of installation paths. If everything is OK, gain 
BUILDSTDERR: administrator privileges, stop the PostgreSQL service, run
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: to install the PostgreSQL RDKit cartridge, then start again
BUILDSTDERR: the PostgreSQL service
BUILDSTDERR: =====================================================================
-- Configuring done
-- Generating done
BUILDSTDERR: CMake Warning:
BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3
+ make -j2
/usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2018_03_4/python3 -B/builddir/build/BUILD/rdkit-Release_2018_03_4/python3 --check-build-system CMakeFiles/Makefile.cmake 0
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/utils.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/FreeChemicalFeature.cpp:12:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/RDLog.cpp
[  0%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.03.4 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.03.4 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so
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[  1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/Dict.cpp
[  1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/LocaleSwitcher.cpp
[  1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/c++  -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/versions.cpp
[  1%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.03.4 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
Scanning dependencies of target EigenSolvers
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Scanning dependencies of target DataStructs
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  1%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers && /usr/bin/c++  -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
[  2%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/BitVect.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/BitVect.cpp:14:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  2%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseBitVect.cpp
[  3%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  3%] Built target EigenSolvers
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
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[  4%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost && /usr/bin/c++  -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseBitVect.cpp:15:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/ExplicitBitVect.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/ExplicitBitVect.cpp:15:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  4%] Linking CXX shared library ../../lib/libRDKitRDBoost.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2018.03.4 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2018.03.4 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  4%] Built target RDBoost
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
Scanning dependencies of target testRDValue
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[  4%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/testRDValue.cpp
[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Utils.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/testRDValue.cpp:4:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/base64.cpp
[  5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/BitOps.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/BitOps.cpp:16:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  6%] Linking CXX executable testRDValue
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o  -o testRDValue -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  6%] Built target testRDValue
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
Scanning dependencies of target testDict
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  7%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/testDict.cpp
[  7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/DiscreteDistMat.cpp
[  7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/DiscreteValueVect.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/DiscreteValueVect.cpp:13:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/FPBReader.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/FPBReader.cpp:19:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/MultiFPBReader.cpp
[  7%] Linking CXX executable testDict
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o  -o testDict -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  7%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap/RDBase.cpp
[  7%] Linking CXX shared library ../../lib/libRDKitDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.03.4 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
Scanning dependencies of target testMatrices
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap/RDBase.cpp:15:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[  7%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/testMatrices.cpp
[  7%] Linking CXX executable testMatrices
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o  -o testMatrices -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
Scanning dependencies of target Catalogs
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[  7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.cpp:13:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[  7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/CatalogParams.cpp
[  7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs && /usr/bin/c++  -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/CatalogEntry.cpp
[  8%] Linking CXX shared library ../../lib/libRDKitCatalogs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.03.4 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
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make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
Scanning dependencies of target testQuery
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  8%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query/test.cpp
[  8%] Linking CXX executable testQuery
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testQuery.dir/test.cpp.o  -o testQuery -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target testMatCalc
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[  8%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
[  8%] Linking CXX executable testMatCalc
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o  -o testMatCalc -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMetricMatrixCalc
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory && /usr/bin/c++  -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory/InfoBitRanker.cpp
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.03.4 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.03.4 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o  -o testChemicalFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitChemicalFeatures.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testMultiFPB.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Transform2D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Transform3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/UniformGrid3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o  -o testMultiFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
Scanning dependencies of target testFPB
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testFPB.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/UniformGrid3D.cpp:13:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 11%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/c++  -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/GridUtils.cpp
[ 11%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 12%] Linking CXX executable testFPB
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1
[ 12%] Built target RDGeometryLib
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o  -o testFPB -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target testDataStructs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Built target testFPB
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target cDataStructs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/DataStructs.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:25:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp: In function 'void test5DiscreteVectOps2()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:476:19: warning: implicitly-declared 'RDKit::DiscreteValueVect& RDKit::DiscreteValueVect::operator=(const RDKit::DiscreteValueVect&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   476 |   vect5 = vect1 - vect2;
BUILDSTDERR:       |                   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/DiscreteValueVect.h:49:3: note: because 'RDKit::DiscreteValueVect' has user-provided 'RDKit::DiscreteValueVect::DiscreteValueVect(const RDKit::DiscreteValueVect&)'
BUILDSTDERR:    49 |   DiscreteValueVect(const DiscreteValueVect &other);
BUILDSTDERR:       |   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:478:19: warning: implicitly-declared 'RDKit::DiscreteValueVect& RDKit::DiscreteValueVect::operator=(const RDKit::DiscreteValueVect&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   478 |   vect5 = vect2 - vect1;
BUILDSTDERR:       |                   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/DiscreteValueVect.h:49:3: note: because 'RDKit::DiscreteValueVect' has user-provided 'RDKit::DiscreteValueVect::DiscreteValueVect(const RDKit::DiscreteValueVect&)'
BUILDSTDERR:    49 |   DiscreteValueVect(const DiscreteValueVect &other);
BUILDSTDERR:       |   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp: In function 'void test6SparseIntVect()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:626:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   626 |     iV3 = iV1 & iV2;
BUILDSTDERR:       |                 ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:37:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
BUILDSTDERR:    37 |   SparseIntVect(const SparseIntVect<IndexType> &other) {
BUILDSTDERR:       |   ^~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:724:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   724 |     iV3 = iV1 | iV2;
BUILDSTDERR:       |                 ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:37:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
BUILDSTDERR:    37 |   SparseIntVect(const SparseIntVect<IndexType> &other) {
BUILDSTDERR:       |   ^~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:807:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   807 |     iV3 = iV1 + iV2;
BUILDSTDERR:       |                 ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:37:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
BUILDSTDERR:    37 |   SparseIntVect(const SparseIntVect<IndexType> &other) {
BUILDSTDERR:       |   ^~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:863:17: warning: implicitly-declared 'RDKit::SparseIntVect<int>& RDKit::SparseIntVect<int>::operator=(const RDKit::SparseIntVect<int>&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   863 |     iV3 = iV1 - iV2;
BUILDSTDERR:       |                 ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:37:3: note: because 'RDKit::SparseIntVect<int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = int]'
BUILDSTDERR:    37 |   SparseIntVect(const SparseIntVect<IndexType> &other) {
BUILDSTDERR:       |   ^~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp: In function 'int main()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:1398:12: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
BUILDSTDERR:  1398 |   } catch (IndexErrorException) {
BUILDSTDERR:       |            ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = SparseBitVect]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:1417:17:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   118 |   } catch (IndexErrorException) {
BUILDSTDERR:       |     ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp: In instantiation of 'void Test(T) [with T = ExplicitBitVect]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:1423:19:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/testDatastructs.cpp:118:5: warning: catching polymorphic type 'class IndexErrorException' by value [-Wcatch-value=]
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/DataStructs.cpp:17:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/DiscreteValueVect.cpp
[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/SparseIntVect.cpp
[ 13%] Linking CXX executable testDataStructs
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o  -o testDataStructs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Built target testDataStructs
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
Scanning dependencies of target testGrid
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/testGrid.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/SparseIntVect.cpp:19:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 13%] Linking CXX executable testGrid
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Built target testGrid
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/testTransforms.cpp
[ 13%] Linking CXX executable testTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 13%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target rdGeometry
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap/Point.cpp
[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap/UniformGrid3D.cpp
[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap/rdGeometry.cpp
[ 14%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 14%] Built target rdGeometry
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/wrap_SparseBV.cpp
Scanning dependencies of target Alignment
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 14%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment && /usr/bin/c++  -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment/AlignPoints.cpp
[ 14%] Linking CXX shared library ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.03.4 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 14%] Built target Alignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target Optimizer
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 14%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer/BFGSOpt.cpp
[ 15%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer && /usr/bin/c++  -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer/LinearSearch.cpp
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.03.4 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitInfoTheory.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitInfoTheory.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Atom.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolOps.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FindRings.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ROMol.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PeriodicTable.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/atomic_data.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.cpp
[ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolPickler.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolPickler.cpp:16:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Canon.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/AtomIterators.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/BondIterators.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Aromaticity.cpp
[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Kekulize.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDiscriminators.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ConjugHybrid.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/AddHs.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/AddHs.cpp: In function 'bool RDKit::MolOps::{anonymous}::adjustStereoAtomsIfRequired(RDKit::RWMol&, const RDKit::Atom*, const RDKit::Atom*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/AddHs.cpp:497:9: warning: unused variable 'dblBond' [-Wunused-variable]
BUILDSTDERR:   497 |   Bond *dblBond = nullptr;
BUILDSTDERR:       |         ^~~~~~~
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Matrices.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Chirality.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Chirality.cpp: In function 'bool RDKit::MolOps::{anonymous}::isBondCandidateForStereo(const RDKit::Bond*, const RDKit::ROMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Chirality.cpp:1737:62: warning: unused parameter 'mol' [-Wunused-parameter]
BUILDSTDERR:  1737 | bool isBondCandidateForStereo(const Bond *bond, const ROMol &mol) {
BUILDSTDERR:       |                                                 ~~~~~~~~~~~~~^~~
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RingInfo.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Conformer.cpp
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[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o
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[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/new_canon.cpp
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/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.03.4 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/ForceField.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/AngleBend.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/BondStretch.cpp
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/Nonbonded.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/Inversion.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/TorsionAngle.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/DistanceConstraint.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/AngleConstraint.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/TorsionConstraint.cpp
[ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/PositionConstraint.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/Params.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/Params.cpp:19:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/AngleBend.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/BondStretch.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/StretchBend.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/OopBend.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/TorsionAngle.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/Nonbonded.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/DistanceConstraint.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/AngleConstraint.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/TorsionConstraint.cpp
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/PositionConstraint.cpp
[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/c++  -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/Params.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/Params.cpp:21:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/Params.cpp: In constructor 'ForceFields::MMFF::MMFFAromCollection::MMFFAromCollection(const uint8_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/Params.cpp:50:49: warning: division 'sizeof (const uint8_t* {aka const unsigned char*}) / sizeof (const uint8_t {aka const unsigned char})' does not compute the number of array elements [-Wsizeof-pointer-div]
BUILDSTDERR:    50 |   for (unsigned int i = 0; i < sizeof(mmffArom) / sizeof(mmffArom[0]); ++i) {
BUILDSTDERR:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/Params.cpp:46:62: note: first 'sizeof' operand was declared here
BUILDSTDERR:    46 | MMFFAromCollection::MMFFAromCollection(const boost::uint8_t *mmffArom) {
BUILDSTDERR:       |                                        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
[ 28%] Linking CXX shared library ../../lib/libRDKitForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.03.4 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.03.4 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 28%] Built target ForceField
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target MolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 28%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp:14:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 28%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
[ 28%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.03.4 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.03.4 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 28%] Built target MolCatalog
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target Trajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 28%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory/Trajectory.cpp
[ 29%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.03.4 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.03.4 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 29%] Built target Trajectory
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 29%] [FLEX][SlnL] Building scanner with flex 2.6.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll
[ 30%] [BISON][SlnY] Building parser with bison 3.0.5
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 30%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/SLNParse.cpp
[ 30%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/SLNAttribs.cpp
[ 30%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/sln.tab.cpp
BUILDSTDERR: sln.yy:54: warning: "YYDEBUG" redefined
BUILDSTDERR:    54 | #define YYDEBUG 1
BUILDSTDERR:       | 
BUILDSTDERR: In file included from sln.yy:50:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/sln.tab.hpp:37: note: this is the location of the previous definition
BUILDSTDERR:    37 | # define YYDEBUG 0
BUILDSTDERR:       | 
BUILDSTDERR: sln.yy: In function 'void yysln_error(const char*, std::vector<RDKit::RWMol*>*, bool, void*, const char*)':
BUILDSTDERR: sln.yy:58:43: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR:    58 |              std::vector<RDKit::RWMol *> *ms,bool doQ,
BUILDSTDERR:       |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: sln.yy:58:51: warning: unused parameter 'doQ' [-Wunused-parameter]
BUILDSTDERR:    58 |              std::vector<RDKit::RWMol *> *ms,bool doQ,
BUILDSTDERR:       |                                              ~~~~~^~~
BUILDSTDERR: sln.yy:59:13: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:    59 |       void *scanner,const char * msg )
BUILDSTDERR:       |       ~~~~~~^~~~~~~
[ 30%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/lex.yysln.cpp
[ 31%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.03.4 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.03.4 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 31%] Built target SLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdtrajectory
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 31%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Trajectory.cpp
[ 32%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/rdTrajectory.cpp
[ 32%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitTrajectory.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 32%] Built target rdtrajectory
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 32%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/rdqueries.cpp
[ 32%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Queries.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryAtom.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitQueries.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Queries.cpp:15:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:834:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:840:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   840 |       } catch (KeyErrorException) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:842:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   842 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = bool]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:834:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:840:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   840 |       } catch (KeyErrorException) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:842:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   842 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = bool]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
[ 32%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 32%] Built target rdqueries
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 32%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
[ 32%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
[ 33%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitChemicalFeatures.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 33%] Built target rdChemicalFeatures
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target SubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 33%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 33%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/SubstructUtils.cpp
[ 33%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 33%] Built target SubstructMatch
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 33%] [FLEX][SmartsL] Building scanner with flex 2.6.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll
[ 33%] [BISON][SmilesY] Building parser with bison 3.0.5
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
[ 34%] [BISON][SmartsY] Building parser with bison 3.0.5
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
BUILDSTDERR: smarts.yy: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
[ 34%] [FLEX][SmilesL] Building scanner with flex 2.6.4
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/SmilesParse.cpp
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/SmilesWrite.cpp
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/SmartsWrite.cpp
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/smiles.tab.cpp
BUILDSTDERR: smiles.yy: In function 'void yysmiles_error(const char*, std::vector<RDKit::RWMol*>*, std::__cxx11::list<unsigned int>*, void*, const char*)':
BUILDSTDERR: smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:    38 | yysmiles_error( const char *input,
BUILDSTDERR:       |                 ~~~~~~~~~~~~^~~~~
BUILDSTDERR: smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter]
BUILDSTDERR:    40 |                 std::list<unsigned int> *branchPoints,
BUILDSTDERR:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
BUILDSTDERR: smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:    41 |   void *scanner,const char * msg )
BUILDSTDERR:       |   ~~~~~~^~~~~~~
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/smarts.tab.cpp
BUILDSTDERR: smarts.yy: In function 'void yysmarts_error(const char*, std::vector<RDKit::RWMol*>*, void*, const char*)':
BUILDSTDERR: smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:    24 | yysmarts_error( const char *input,
BUILDSTDERR:       |                 ~~~~~~~~~~~~^~~~~
BUILDSTDERR: smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR:    25 |                 std::vector<RDKit::RWMol *> *ms,
BUILDSTDERR:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
BUILDSTDERR: smarts.yy:26:9: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR:    26 |   void *scanner,const char * msg )
BUILDSTDERR:       |   ~~~~~~^~~~~~~
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms && /usr/bin/c++  -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/MolTransforms.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/Subgraphs.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
[ 36%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges && /usr/bin/c++  -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges/GasteigerParams.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 36%] Built target PartialCharges
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 36%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
[ 36%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
[ 36%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp: In member function 'void RDKit::MMFF::MMFFMolProperties::setMMFFHydrogenType(const RDKit::Atom*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2343:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  2343 |             if (isHOS) {
BUILDSTDERR:       |             ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2350:11: note: here
BUILDSTDERR:  2350 |           default:
BUILDSTDERR:       |           ^~~~~~~
[ 37%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
[ 37%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
[ 37%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++  -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp:21:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 37%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 37%] Built target ForceFieldHelpers
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target MolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 37%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/AlignMolecules.cpp
[ 38%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
[ 38%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.03.4 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 38%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeometry
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 38%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/DistGeomUtils.cpp
[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/TriangleSmooth.cpp
[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/DistViolationContrib.cpp
[ 39%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/c++  -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/ChiralViolationContrib.cpp
[ 39%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.03.4 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../lib/libRDKitForceField.so.1.2018.03.4 ../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 39%] Built target DistGeometry
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 39%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap/ForceField.cpp
[ 39%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 39%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeom
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 39%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/testDistGeom.cpp
[ 39%] Linking CXX executable testDistGeom
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../lib/libRDKitForceField.so.1.2018.03.4 ../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 39%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap && /usr/bin/c++  -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap/DistGeom.cpp
[ 40%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Built target DistGeom
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/itertest.cpp
[ 40%] Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolqueryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/querytest.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryAtom.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitQueries.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/querytest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = double]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:834:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:840:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   840 |       } catch (KeyErrorException) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:842:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   842 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Bond*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, std::__cxx11::basic_string<char> >::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:834:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:840:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   840 |       } catch (KeyErrorException) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:842:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   842 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h: In instantiation of 'bool RDKit::HasPropWithValueQuery<TargetPtr, T>::Match(TargetPtr) const [with TargetPtr = const RDKit::Atom*; T = int]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:770:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:776:9: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:   776 |       } catch (KeyErrorException e) {
BUILDSTDERR:       |         ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/QueryOps.h:778:9: warning: catching polymorphic type 'class boost::bad_any_cast' by value [-Wcatch-value=]
BUILDSTDERR:   778 |       } catch (boost::bad_any_cast) {
BUILDSTDERR:       |         ^~~~~
[ 40%] Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
Scanning dependencies of target test-valgrind
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test-valgrind.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test-valgrind.cpp: In function 'void test1()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test-valgrind.cpp:46:20: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    46 |     testRemovals(*m);
BUILDSTDERR:       |                    ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test-valgrind.cpp:11:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test-valgrind.cpp:33:25: note:   initializing argument 1 of 'void testRemovals(RDKit::RWMol)'
BUILDSTDERR:    33 | void testRemovals(RWMol m) {
BUILDSTDERR:       |                   ~~~~~~^
[ 41%] Linking CXX executable test-valgrind
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o  -o test-valgrind -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 41%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestCanon
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testCanon.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testCanon.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testCanon.cpp:180:18: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
BUILDSTDERR:   180 |         } catch (MolSanitizeException) {
BUILDSTDERR:       |                  ^~~~~~~~~~~~~~~~~~~~
[ 41%] Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 41%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolcpTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/cptest.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/cptest.cpp: In function 'void test2()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/cptest.cpp:42:30: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    42 |   auto *mol2 = new RWMol(*mol);
BUILDSTDERR:       |                              ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/cptest.cpp:10:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 42%] Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 42%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
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make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 42%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/memtest1.cpp
[ 42%] Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 42%] Built target graphmolMemTest1
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 42%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp:29:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 42%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:26:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp: In function 'void RDKit::MolFragmenter::{anonymous}::checkChiralityPostMove(const RDKit::ROMol&, const RDKit::Atom*, RDKit::Atom*, const RDKit::Bond*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:367:16: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:   367 |       if (bidx != bond->getIdx()) {
BUILDSTDERR:       |           ~~~~~^~~~~~~~~~~~~~~~~
[ 42%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 42%] Built target ChemTransforms
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smaTest1
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[ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/smatest.cpp
[ 42%] Linking CXX executable smaTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o  -o smaTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 42%] Built target smaTest1
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FilterCatalog
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Filters.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Filters.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Filters.cpp:32:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp:32:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Filters.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp:32:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
[ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp:34:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 44%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 44%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target Fingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.cpp:15:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp:15:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/MorganFingerprints.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp:38:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/AtomPairs.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/AtomPairs.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/AtomPairs.cpp:13:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/MACCS.cpp
[ 45%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.03.4 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
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[ 45%] Built target Fingerprints
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs1
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 45%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/test1.cpp
[ 45%] Linking CXX executable testSubgraphs1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o  -o testSubgraphs1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs2
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 45%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/test2.cpp
[ 45%] Linking CXX executable testSubgraphs2
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 45%] Built target testSubgraphs2
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 45%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
[ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp:15:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatParams.cpp
[ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp:11:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 46%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.03.4 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.03.4 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 46%] Built target FragCatalog
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
[ 48%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp:13:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 48%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.4 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.4 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target MolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
[ 48%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
[ 48%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.03.4 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.03.4 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target ShapeHelpers
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
[ 48%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.03.4 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.03.4 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target ReducedGraphs
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target SubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp:31:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 49%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.4 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.4 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 49%] Built target SubstructLibrary
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 49%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
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[ 49%] Linking CXX executable testSLNParse
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
[ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitSLNParse.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
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[ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/rdchem.cpp
[ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
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[ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Atom.cpp
[ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Bond.cpp
[ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Mol.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Mol.cpp: In instantiation of 'boost::python::api::object generic__copy__(boost::python::api::object) [with Copyable = RDKit::ReadWriteMol]':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Mol.cpp:674:56:   required from here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Mol.cpp:188:7: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   188 | class ReadWriteMol : public RWMol {
BUILDSTDERR:       |       ^~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/seqs.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Mol.cpp:15:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/props.hpp:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Mol.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap.h:195:7: note: synthesized method 'RDKit::ReadWriteMol::ReadWriteMol(const RDKit::ReadWriteMol&)' first required here
BUILDSTDERR:   195 |       new Copyable(python::extract<const Copyable &>(copyable)));
BUILDSTDERR:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/Conformer.cpp
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/RingInfo.cpp
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/EditableMol.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/EditableMol.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/EditableMol.cpp: In destructor 'RDKit::{anonymous}::EditableMol::~EditableMol()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/Invariant.h:112:11: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   112 |     throw inv;                                                             \
BUILDSTDERR:       |           ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
BUILDSTDERR:   112 |     throw inv;                                                             \
BUILDSTDERR:       |           ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/Invariant.h:112:11: note: in C++11 destructors default to noexcept
BUILDSTDERR:   112 |     throw inv;                                                             \
BUILDSTDERR:       |           ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/Invariant.h:112:11: note: in definition of macro 'PRECONDITION'
BUILDSTDERR:   112 |     throw inv;                                                             \
BUILDSTDERR:       |           ^~~
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MonomerInfo.cpp
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MolBundle.cpp
[ 52%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 52%] Built target rdchem
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
Scanning dependencies of target Depictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 53%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/RDDepictor.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/RDDepictor.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:313:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   313 |     return posi->second;
BUILDSTDERR:       |                  ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:58:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
BUILDSTDERR:    58 |   EmbeddedAtom &operator=(const EmbeddedAtom &other) {
BUILDSTDERR:       |                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/RDDepictor.cpp:310:58: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
BUILDSTDERR:   310 |                              bool permuteDeg4Nodes, bool forceRDKit) {
BUILDSTDERR:       |                                                     ~~~~~^~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/RDDepictor.cpp: In function 'unsigned int RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol&, const DOUBLE_SMART_PTR*, bool, bool, double, unsigned int, unsigned int, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/RDDepictor.cpp:421:10: warning: unused parameter 'forceRDKit' [-Wunused-parameter]
BUILDSTDERR:   421 |     bool forceRDKit) {
BUILDSTDERR:       |     ~~~~~^~~~~~~~~~
[ 53%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:313:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   313 |     return posi->second;
BUILDSTDERR:       |                  ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:58:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
BUILDSTDERR:    58 |   EmbeddedAtom &operator=(const EmbeddedAtom &other) {
BUILDSTDERR:       |                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp: In member function 'void RDDepict::EmbeddedFrag::addAtomToAtomWithAng(unsigned int, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:710:40: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   710 |   EmbeddedAtom refAtom = d_eatoms[toAid];
BUILDSTDERR:       |                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:58:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
BUILDSTDERR:    58 |   EmbeddedAtom &operator=(const EmbeddedAtom &other) {
BUILDSTDERR:       |                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp: In member function 'void RDDepict::EmbeddedFrag::addAtomToAtomWithNoAng(unsigned int, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:781:40: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   781 |   EmbeddedAtom refAtom = d_eatoms[toAid];
BUILDSTDERR:       |                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:58:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
BUILDSTDERR:    58 |   EmbeddedAtom &operator=(const EmbeddedAtom &other) {
BUILDSTDERR:       |                 ^~~~~~~~
[ 53%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/DepictUtils.cpp
[ 53%] Linking CXX shared library ../../../lib/libRDKitDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.03.4 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 53%] Built target Depictor
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 53%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
[ 53%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Embedder.cpp
[ 53%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 53%] Built target DistGeomHelpers
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolChemicalFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
[ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
[ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
[ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
[ 54%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.4 ../../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 54%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 54%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                     ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                                 ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                     ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                                 ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                     ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                                 ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                     ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    55 |       : Point(other), x(other.x), y(other.y), z(other.z) {}
BUILDSTDERR:       |                                                 ~~~~~~^
[ 55%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitShapeHelpers.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 55%] Built target rdShapeHelpers
[ 56%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target testReducedGraphs
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 56%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/test1.cpp
[ 56%] Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitReducedGraphs.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
[ 57%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/wrap_BitOps.cpp
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/wrap_FPB.cpp
[ 57%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/wrap_Utils.cpp
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/inchi.cpp
[ 57%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
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[ 58%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRDInchiLib.so.1 -o ../../lib/libRDKitRDInchiLib.so.1.2018.03.4 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: -linchi ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.so.1.2018.03.4 ../../lib/libRDKitRDInchiLib.so.1 ../../lib/libRDKitRDInchiLib.so
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[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/Mol2FileParser.cpp
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[ 58%] Built target cDataStructs
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Scanning dependencies of target rdinchi
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[ 58%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/Wrap/pyInchi.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/Mol2FileParser.cpp:40:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileParser.cpp
[ 59%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitRDInchiLib.so.1.2018.03.4 -linchi ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 59%] Built target rdinchi
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileStereochem.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:23:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileParser.cpp: In function 'RDKit::Bond* RDKit::{anonymous}::ParseMolFileBondLine(const string&, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1425:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:  1425 |     } catch (boost::bad_lexical_cast) {
BUILDSTDERR:       |                     ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1453:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:  1453 |     } catch (boost::bad_lexical_cast) {
BUILDSTDERR:       |                     ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileParser.cpp:1461:21: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:  1461 |     } catch (boost::bad_lexical_cast) {
BUILDSTDERR:       |                     ^~~~~~~~~~~~~~~~
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp: In function 'std::string RDKit::MolToMolBlock(const RDKit::ROMol&, bool, int, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolFileWriter.cpp:1196:12: warning: catching polymorphic type 'class RDKit::{anonymous}::RequiresV3000Exception' by value [-Wcatch-value=]
BUILDSTDERR:  1196 |   } catch (RequiresV3000Exception) {
BUILDSTDERR:       |            ^~~~~~~~~~~~~~~~~~~~~~
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SDMolSupplier.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp:12:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SDMolSupplier.cpp:13:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SDWriter.cpp
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp:13:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SmilesWriter.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TDTWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/types.h:26,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/MolWriters.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor 'virtual RDKit::TDTWriter::~TDTWriter()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/Invariant.h:104:11: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   104 |     throw inv;                                                         \
BUILDSTDERR:       |           ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
BUILDSTDERR:    64 |     CHECK_INVARIANT(dp_ostream,
BUILDSTDERR:       |     ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/Invariant.h:104:11: note: in C++11 destructors default to noexcept
BUILDSTDERR:   104 |     throw inv;                                                         \
BUILDSTDERR:       |           ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
BUILDSTDERR:    64 |     CHECK_INVARIANT(dp_ostream,
BUILDSTDERR:       |     ^~~~~~~~~~~~~~~
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TplFileParser.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TplFileWriter.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/TplFileParser.cpp:20:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBParser.cpp
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBParser.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:    16 | static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:       |                     ^~~~~~~~~~~~
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBSupplier.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBWriter.cpp: In function 'std::string RDKit::GetPDBBondLines(const RDKit::Atom*, bool, bool, bool, unsigned int&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:163:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   163 |         v.push_back(dst);
BUILDSTDERR:       |         ~~~~~~~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:164:7: note: here
BUILDSTDERR:   164 |       case Bond::TRIPLE:
BUILDSTDERR:       |       ^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:165:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   165 |         v.push_back(dst);
BUILDSTDERR:       |         ~~~~~~~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/PDBWriter.cpp:166:7: note: here
BUILDSTDERR:   166 |       case Bond::DOUBLE:
BUILDSTDERR:       |       ^~~~
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/ProximityBonds.cpp
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SequenceParsers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:    16 | static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:       |                     ^~~~~~~~~~~~
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/SequenceWriters.cpp
[ 62%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.03.4 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 62%] Built target FileParsers
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 63%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/testUFFForceField.cpp
Scanning dependencies of target Descriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Crippen.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/testUFFForceField.cpp: In function 'void testUFFCopy()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/testUFFForceField.cpp:1551:39: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  1551 |     auto *cmol = new RDKit::RWMol(*mol);
BUILDSTDERR:       |                                       ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/FileParsers.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/testUFFForceField.cpp:30:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Crippen.cpp:20:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Crippen.cpp: In constructor 'RDKit::Descriptors::CrippenParamCollection::CrippenParamCollection(const string&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Crippen.cpp:171:25: warning: catching polymorphic type 'class boost::bad_lexical_cast' by value [-Wcatch-value=]
BUILDSTDERR:   171 |         } catch (boost::bad_lexical_cast) {
BUILDSTDERR:       |                         ^~~~~~~~~~~~~~~~
[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/MolDescriptors.cpp
[ 64%] Linking CXX executable testUFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 64%] Built target testUFFForceField
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 65%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/testMMFFForceField.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/testMMFFForceField.cpp: In function 'void testMMFFCopy()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/testMMFFForceField.cpp:1667:39: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  1667 |     auto *cmol = new RDKit::RWMol(*mol);
BUILDSTDERR:       |                                       ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/testMMFFForceField.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/MolSurf.cpp
[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Lipinski.cpp
[ 65%] Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 65%] Built target testMMFFForceField
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPicklerGlobalSetting
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPicklerGlobalSettings.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPicklerGlobalSettings.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPicklerGlobalSettings.cpp:256:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:   256 | int main(int argc, char *argv[]) {
BUILDSTDERR:       |          ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPicklerGlobalSettings.cpp:256:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:   256 | int main(int argc, char *argv[]) {
BUILDSTDERR:       |                    ~~~~~~^~~~~~
[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/MQN.cpp
[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Property.cpp
[ 65%] Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 65%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 66%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/hanoitest.cpp
[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
[ 67%] Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 67%] Built target hanoiTest
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testChirality.cpp
[ 68%] Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPickler.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPickler.cpp: In function 'void testGithub1563()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPickler.cpp:1221:13: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  1221 |   RWMol nm(m);
BUILDSTDERR:       |             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testPickler.cpp:11:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 68%] Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molBundleTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/testMolBundle.cpp
[ 68%] Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/USRDescriptor.cpp
Scanning dependencies of target resMolSupplierTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/resMolSupplierTest.cpp
[ 68%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.03.4 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target Descriptors
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMolOpsTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Linking CXX executable resMolSupplierTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
[ 69%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Built target resMolSupplierTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test1.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test1.cpp: In function 'void testAtomResidues()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test1.cpp:1092:28: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  1092 |     auto *m2 = new RWMol(*m);
BUILDSTDERR:       |                            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/test1.cpp:11:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp: In function 'void testRenumberAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:4694:12: warning: unused variable 'nm' [-Wunused-variable]
BUILDSTDERR:  4694 |     ROMol *nm = MolOps::renumberAtoms(*m, nVect);
BUILDSTDERR:       |            ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp: In function 'void testMolAssignment()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:4780:17: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  4780 |     RWMol m2 = *m;
BUILDSTDERR:       |                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:6941:16: warning: unused variable 'm' [-Wunused-variable]
BUILDSTDERR:  6941 |         RWMol *m = SmilesToMol(smiles);
BUILDSTDERR:       |                ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp: In function 'void testGithub1614()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7144:17: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7144 |       RWMol nm(m);
BUILDSTDERR:       |                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7156:17: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7156 |       RWMol nm(m);
BUILDSTDERR:       |                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7183:17: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7183 |       RWMol nm(m);
BUILDSTDERR:       |                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7209:17: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7209 |       RWMol nm(m);
BUILDSTDERR:       |                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7241:17: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7241 |       RWMol nm(m);
BUILDSTDERR:       |                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7261:18: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7261 |       RWMol nm(*m);
BUILDSTDERR:       |                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7285:18: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7285 |       RWMol nm(*m);
BUILDSTDERR:       |                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7304:18: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7304 |       RWMol nm(*m);
BUILDSTDERR:       |                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:7326:18: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  7326 |       RWMol nm(*m);
BUILDSTDERR:       |                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/molopstest.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 69%] Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../lib/libRDKitForceField.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Built target graphmolTest1
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/testDepictor.cpp
[ 69%] Linking CXX executable testDepictor
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h: In member function 'RDDepict::EmbeddedAtom RDDepict::EmbeddedFrag::GetEmbeddedAtom(unsigned int) const':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:313:18: warning: implicitly-declared 'RDDepict::EmbeddedAtom::EmbeddedAtom(const RDDepict::EmbeddedAtom&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   313 |     return posi->second;
BUILDSTDERR:       |                  ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/EmbeddedFrag.h:58:17: note: because 'RDDepict::EmbeddedAtom' has user-provided 'RDDepict::EmbeddedAtom& RDDepict::EmbeddedAtom::operator=(const RDDepict::EmbeddedAtom&)'
BUILDSTDERR:    58 |   EmbeddedAtom &operator=(const EmbeddedAtom &other) {
BUILDSTDERR:       |                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'void RDDepict::setPreferCoordGen(bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:131:29: warning: unused parameter 'value' [-Wunused-parameter]
BUILDSTDERR:   131 | void setPreferCoordGen(bool value) {
BUILDSTDERR:       |                        ~~~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'unsigned int RDDepict::Compute2DCoords(RDKit::ROMol&, bool, bool, boost::python::dict&, unsigned int, unsigned int, int, bool, double, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:49:61: warning: '*((void*)&<anonymous> +32)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    49 |     cMap[id] = python::extract<RDGeom::Point2D>(coordMap[id]);
BUILDSTDERR:       |                                                             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/RDDepictor.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:289:15: warning: '*((void*)&<anonymous> +40)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:   289 |     y = other.y;
BUILDSTDERR:       |         ~~~~~~^
[ 69%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
Scanning dependencies of target cxsmilesTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
[ 69%] Linking CXX executable cxsmilesTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 70%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/test.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/test.cpp: In function 'void testFail()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/test.cpp:167:14: warning: catching polymorphic type 'class RDKit::MolSanitizeException' by value [-Wcatch-value=]
BUILDSTDERR:   167 |     } catch (MolSanitizeException) {
BUILDSTDERR:       |              ^~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 70%] Built target graphmolMolOpsTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
Scanning dependencies of target testTplParser
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp: In function 'void test1()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp:42:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    42 |   conf = m->getConformer(0);
BUILDSTDERR:       |                           ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:24,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Conformer.h:59:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)'
BUILDSTDERR:    59 |   Conformer(const Conformer &other);
BUILDSTDERR:       |   ^~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp:47:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    47 |   conf = m->getConformer(1);
BUILDSTDERR:       |                           ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:24,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Conformer.h:59:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)'
BUILDSTDERR:    59 |   Conformer(const Conformer &other);
BUILDSTDERR:       |   ^~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp:58:27: warning: implicitly-declared 'RDKit::Conformer& RDKit::Conformer::operator=(const RDKit::Conformer&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    58 |   conf = m->getConformer(0);
BUILDSTDERR:       |                           ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:24,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testTpls.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Conformer.h:59:3: note: because 'RDKit::Conformer' has user-provided 'RDKit::Conformer::Conformer(const RDKit::Conformer&)'
BUILDSTDERR:    59 |   Conformer(const Conformer &other);
BUILDSTDERR:       |   ^~~~~~~~~
[ 70%] Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 70%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testMolWriter.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testMolWriter.cpp:20:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 71%] Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolSupplier
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testMolSupplier.cpp
[ 71%] Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target fileParsersTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/test1.cpp
[ 71%] Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testMol2ToMol.cpp
[ 72%] Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 72%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
Scanning dependencies of target testSequence
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 73%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/testSequence.cpp
[ 73%] Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 73%] Built target testSequence
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 73%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/test1.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/test1.cpp: In function 'void testRecursiveSerialNumbers()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/test1.cpp:583:58: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   583 |     auto *rsq = new RecursiveStructureQuery(new RWMol(*q1), 1);
BUILDSTDERR:       |                                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/test1.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/test1.cpp:592:52: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   592 |     rsq = new RecursiveStructureQuery(new RWMol(*q1), 1);
BUILDSTDERR:       |                                                    ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/test1.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 74%] Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 74%] Built target testSubstructMatch
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Reaction.cpp
[ 74%] Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 74%] Built target fileParsersTest1
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 74%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/MDLParser.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/MDLParser.cpp:39:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/DaylightParser.cpp
[ 74%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionPickler.cpp:19:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 75%] Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 75%] Built target testChemTransforms
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 76%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp:34:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 76%] Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 76%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 76%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
[ 76%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp:35:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 76%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testFragCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 77%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/test1.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatGenerator.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/test1.cpp:17:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 77%] Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFragCatalog.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 77%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatGenerator.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp:15:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatGenerator.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp:17:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragCatGenerator.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp:14:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/FragFPGenerator.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp:14:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitFragCatalog.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:    87 | int main(int argc, char *argv[]) {
BUILDSTDERR:       |          ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:    87 | int main(int argc, char *argv[]) {
BUILDSTDERR:       |                    ~~~~~~^~~~~~
[ 78%] Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target testDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/test.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/test.cpp:24:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/test.cpp: In function 'void testProperties()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/test.cpp:1912:14: warning: catching polymorphic type 'class KeyErrorException' by value [-Wcatch-value=]
BUILDSTDERR:  1912 |     } catch (KeyErrorException) {
BUILDSTDERR:       |              ^~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/test.cpp: In function 'void testStereoCounting()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/test.cpp:1960:12: warning: catching polymorphic type 'class ValueErrorException' by value [-Wcatch-value=]
BUILDSTDERR:  1960 |   } catch (ValueErrorException) {
BUILDSTDERR:       |            ^~~~~~~~~~~~~~~~~~~
[ 78%] Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/AtomPairs.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:19:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:18,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    84 |     x = other.x;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    85 |     y = other.y;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    86 |     z = other.z;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    84 |     x = other.x;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    85 |     y = other.y;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:86:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    86 |     z = other.z;
BUILDSTDERR:       |         ~~~~~~^
[ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/test1.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/test1.cpp:17:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 79%] Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Built target testFingerprints
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolTransforms
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/test1.cpp
[ 79%] Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Built target testMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
[ 79%] Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp: In function 'void testUFFBuilder2()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp:499:32: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   499 |     auto *mol2 = new RWMol(*mol);
BUILDSTDERR:       |                                ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp:526:32: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   526 |     auto *mol2 = new RWMol(*mol);
BUILDSTDERR:       |                                ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 79%] Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
[ 79%] Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Built target testCrystalForceField
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 79%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp: In function 'void testGithubPullRequest1635()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1988:22: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  1988 |     RWMol firstMol(*m);
BUILDSTDERR:       |                      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:1989:23: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  1989 |     RWMol secondMol(*m);
BUILDSTDERR:       |                       ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 80%] Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 80%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionWriter.cpp
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++  -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionDepict.cpp
[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Conformer.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ROMol.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:18,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h: In function 'RDKit::INT_VECT RDKit::EmbedMultipleConfs(RDKit::ROMol&, unsigned int, unsigned int, int, bool, bool, double, bool, unsigned int, double, boost::python::dict&, double, bool, bool, int, bool, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    84 |     x = other.x;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    85 |     y = other.y;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h: In function 'int RDKit::EmbedMolecule(RDKit::ROMol&, unsigned int, int, bool, bool, double, bool, unsigned int, boost::python::dict&, double, bool, bool, bool, bool, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    84 |     x = other.x;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/point.h:85:15: warning: '*((void*)(&<anonymous>)+24).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    85 |     y = other.y;
BUILDSTDERR:       |         ~~~~~~^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp: In function 'RDKit::SparseIntVect<unsigned int>* RDKit::DifferenceFingerprintChemReaction(const RDKit::ChemicalReaction&, const RDKit::ReactionFingerprintParams&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:221:42: warning: implicitly-declared 'RDKit::SparseIntVect<unsigned int>& RDKit::SparseIntVect<unsigned int>::operator=(const RDKit::SparseIntVect<unsigned int>&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   221 |     (*res) = *productFP - *reactantFP + *agentFP;
BUILDSTDERR:       |                                          ^~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:37:3: note: because 'RDKit::SparseIntVect<unsigned int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = unsigned int]'
BUILDSTDERR:    37 |   SparseIntVect(const SparseIntVect<IndexType> &other) {
BUILDSTDERR:       |   ^~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:226:28: warning: implicitly-declared 'RDKit::SparseIntVect<unsigned int>& RDKit::SparseIntVect<unsigned int>::operator=(const RDKit::SparseIntVect<unsigned int>&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   226 |     (*res) = *productFP - *reactantFP;
BUILDSTDERR:       |                            ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:37:3: note: because 'RDKit::SparseIntVect<unsigned int>' has user-provided 'RDKit::SparseIntVect<IndexType>::SparseIntVect(const RDKit::SparseIntVect<IndexType>&) [with IndexType = unsigned int]'
BUILDSTDERR:    37 |   SparseIntVect(const SparseIntVect<IndexType> &other) {
BUILDSTDERR:       |   ^~~~~~~~~~~~~
[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionUtils.cpp
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Built target rdDistGeom
[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/MoleculeParser.cpp
[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionRunner.cpp
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp: In function 'void test1MolWithQueryAlign()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp:91:45: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    91 |   auto *m1 = new RWMol(*MolFileToMol(fname1));
BUILDSTDERR:       |                                             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/FileParsers.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp:14:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp:95:45: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    95 |   auto *m2 = new RWMol(*MolFileToMol(fname2));
BUILDSTDERR:       |                                             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/FileParsers.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp:14:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp:109:45: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   109 |   auto *m3 = new RWMol(*MolFileToMol(fname3));
BUILDSTDERR:       |                                             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/FileParsers.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/testMolAlign.cpp:14:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 81%] Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.03.4 ../../../lib/libRDKitDistGeometry.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp:39:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
[ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp:16:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
[ 82%] Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Built target testFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
[ 82%] Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitShapeHelpers.so.1.2018.03.4 ../../../lib/libRDKitMolAlign.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitAlignment.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Built target testShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/test1.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/MolCatalog.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/test1.cpp:11:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 83%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.03.4 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 83%] Built target ChemReactions
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolCatalog
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 83%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
[ 83%] Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMolCatalog.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 83%] Built target testMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/MolCatalog.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp:8:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitMolCatalog.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 83%] Built target rdMolCatalog
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 83%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/FMCS.cpp
[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
[ 84%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Seed.cpp
[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
[ 84%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
[ 84%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.03.4 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread -lboost_serialization -lcairo 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.03.4 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/MolHash.cpp
[ 85%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/HashToString.cpp
[ 85%] Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.03.4 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.03.4 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
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[ 85%] Built target MolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA && /usr/bin/c++  -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.cpp: In function 'void RDKit::MMPA::addResult(std::vector<std::pair<boost::shared_ptr<RDKit::ROMol>, boost::shared_ptr<RDKit::ROMol> > >&, const RDKit::ROMol&, const BondVector_t&, size_t)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.cpp:148:42: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   148 |     side_chains = RWMOL_SPTR(new RWMol(em));  // output = '%s,%s,,%s.%s'
BUILDSTDERR:       |                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/../RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.cpp:302:48: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   302 |       RWMol tmp_side_chain(*(side_chains.get()));
BUILDSTDERR:       |                                                ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/../RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.h:14,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 85%] Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.03.4 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.03.4 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Built target MMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructChecker.cpp
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/../../RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:17:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
BUILDSTDERR:    33 |     std::istream &iss = ss;
BUILDSTDERR:       |                   ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
BUILDSTDERR:   356 |   unsigned k = fscanf(fp, "%d", &n);
BUILDSTDERR:       |            ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::loadChargeDataTables(const string&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:665:46: warning: unused parameter 'path' [-Wunused-parameter]
BUILDSTDERR:   665 | bool loadChargeDataTables(const std::string &path) {
BUILDSTDERR:       |                           ~~~~~~~~~~~~~~~~~~~^~~~
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StructureFlags.cpp
[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Utilites.cpp
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Pattern.cpp
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Stereo.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Stereo.cpp:371:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
BUILDSTDERR:   371 |     if (ligands[i].direction != RDKit::Bond::NONE)
BUILDSTDERR:       |        ^
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp: In function 'bool RDKit::StructureCheck::StripSmallFragments(RDKit::RWMol&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp:97:19: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:    97 |     RWMol copy(mol);
BUILDSTDERR:       |                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Property.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/RegisterDescriptor.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Lipinski.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/../Descriptors/MolDescriptors.h:16,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/StripSmallFragments.cpp:13:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/ReCharge.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:   166 |   const AugmentedAtom *AAp;
BUILDSTDERR:       |                        ^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/ReCharge.cpp:405:17: warning: unused variable 'atom' [-Wunused-variable]
BUILDSTDERR:   405 |     const Atom &atom = *Mol.getAtomWithIdx(i);
BUILDSTDERR:       |                 ^~~~
[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Tautomer.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Tautomer.cpp:61:12: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:    61 |     if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:       |         ~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Tautomer.cpp:61:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
BUILDSTDERR:    61 |     if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:       |                     ~~~^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
BUILDSTDERR:    36 |   const unsigned ntb = toTautomer.getNumBonds();
BUILDSTDERR:       |                  ^~~
[ 87%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.03.4 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.03.4 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 87%] Built target StructChecker
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
[ 87%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
Scanning dependencies of target trajectoryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 87%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory/trajectoryTest.cpp
[ 87%] Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.03.4 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 87%] Built target FMCS
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target substructLibraryTest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 87%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
[ 88%] Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitTrajectory.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.03.4 ../../../lib/libRDKitForceField.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitOptimizer.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSubstructLibrary
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:18:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:   248 | int main(int argc, char *argv[]) {
BUILDSTDERR:       |          ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:248:26: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:   248 | int main(int argc, char *argv[]) {
BUILDSTDERR:       |                    ~~~~~~^~~~~~
[ 88%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
[ 88%] Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitSubstructLibrary.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Built target substructLibraryTest
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target RGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp: In member function 'void RDKit::RGroupDecompData::prepareCores()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:476:60: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   476 |           boost::shared_ptr<RWMol>(new RWMol(coreIt->second));
BUILDSTDERR:       |                                                            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/../RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:31:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp: In member function 'void RDKit::RGroupDecompData::relabel()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:725:69: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   725 |       boost::shared_ptr<RWMol> labelledCore(new RWMol(coreIt->second));
BUILDSTDERR:       |                                                                     ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/../RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:31:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp: In member function 'int RDKit::RGroupDecomposition::add(const RDKit::ROMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:914:30: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   914 |             RWMol newCore(mol);
BUILDSTDERR:       |                              ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/../RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h:13,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp:31:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/SubstructLibrary.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp:35:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 88%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.4 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.4 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Built target RGroupDecomposition
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
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make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/rdmolfiles.cpp
[ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitSubstructLibrary.so.1.2018.03.4 ../../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolops
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/rdmolops.cpp
[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MolOps.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MolOps.cpp:26:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MolOps.cpp:30:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MolOps.cpp: In function 'RDKit::ROMol* RDKit::getNormal(const RDKit::RWMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MolOps.cpp:379:50: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:   379 |   ROMol *res = static_cast<ROMol *>(new RWMol(mol));
BUILDSTDERR:       |                                                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/MolOps.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/SDMolSupplier.cpp
[ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/TDTMolSupplier.cpp
[ 90%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitMolDraw2D.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread -lboost_serialization 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 90%] Built target rdmolops
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
Scanning dependencies of target rdkit
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 90%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/Fingerprints.h:15,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:40:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'double calcSparseStringDiceSml(const char*, unsigned int, const char*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:982:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:   982 | extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
BUILDSTDERR:       |                                                          ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:983:71: warning: unused parameter 'szb' [-Wunused-parameter]
BUILDSTDERR:   983 |                                           const char *b, unsigned int szb) {
BUILDSTDERR:       |                                                          ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsGT(const char*, unsigned int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1095:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  1095 | extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
BUILDSTDERR:       |                                                          ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'bool calcSparseStringAllValsLT(const char*, unsigned int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1133:71: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  1133 | extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
BUILDSTDERR:       |                                                          ~~~~~~~~~~~~~^~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeAvalonBFP(CROMol, bool, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1434:38: warning: unused parameter 'data' [-Wunused-parameter]
BUILDSTDERR:  1434 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:       |                               ~~~~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1434:49: warning: unused parameter 'isQuery' [-Wunused-parameter]
BUILDSTDERR:  1434 | extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:       |                                            ~~~~~^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1435:44: warning: unused parameter 'bitFlags' [-Wunused-parameter]
BUILDSTDERR:  1435 |                               unsigned int bitFlags) {
BUILDSTDERR:       |                               ~~~~~~~~~~~~~^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1874:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:  1874 |     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:       |                     ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1896:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:  1896 |     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:       |                     ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/adapter.cpp:1941:12: warning: unused variable 'nmols' [-Wunused-variable]
BUILDSTDERR:  1941 |   int len, nmols = 0;
BUILDSTDERR:       |            ^~~~~
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bfp_op.c
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/cache.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/cache.c: In function 'createCache':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/cache.c:312:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
BUILDSTDERR:   312 |     methodsOrig = ctx->methods;
BUILDSTDERR:       |                 ^
[ 90%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/guc.c
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/low_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
BUILDSTDERR:   410 |   fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:       |                              ^~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:   410 |   fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:       |                            ^
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:34:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:   238 | #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:       |                             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:   381 |     CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:       |                  ^~~~~~~~~~~~~~~
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:   238 | #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:       |                             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:   409 |     CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:       |                  ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:   238 | #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:       |                             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:   477 |     CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:       |                  ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:33:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
BUILDSTDERR:   484 |     PG_RETURN_INT32((int32)lst);
BUILDSTDERR:       |                     ^
BUILDSTDERR: /usr/include/pgsql/server/postgres.h:464:36: note: in definition of macro 'Int32GetDatum'
BUILDSTDERR:   464 | #define Int32GetDatum(X) ((Datum) (X))
BUILDSTDERR:       |                                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
BUILDSTDERR:   484 |     PG_RETURN_INT32((int32)lst);
BUILDSTDERR:       |     ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:34:
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion]
BUILDSTDERR:   238 | #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:       |                             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:   488 |     CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:       |                  ^~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:   361 | }
BUILDSTDERR:       | ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:   496 | }
BUILDSTDERR:       | ^
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rdkit_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration]
BUILDSTDERR:   275 |   return (int) floor(10000*soergeldistsign(a, b));
BUILDSTDERR:       |                ^~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rdkit_gist.c:42:1: note: include '<math.h>' or provide a declaration of 'floor'
BUILDSTDERR:    41 | #include "bitstring.h"
BUILDSTDERR:   +++ |+#include <math.h>
BUILDSTDERR:    42 | 
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
BUILDSTDERR:   262 |   double d;
BUILDSTDERR:       |          ^
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bfp_gist.c
[ 91%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bfp_gin.c
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bitstring.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    72 |   int i;
BUILDSTDERR:       |       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:   106 |   int i;
BUILDSTDERR:       |       ^
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rdkit_io.c
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rxn_op.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
BUILDSTDERR:   164 | //  /* keep compiler quiet - no extra ; */                                \
BUILDSTDERR:       | ^
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cc -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdkit_EXPORTS -I/usr/include/inchi -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/sfp_op.c
[ 92%] Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/lib64 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib -lpq ../../../lib/libRDKitRDInchiLib.so.1.2018.03.4 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2018.03.4 ../../../lib/libRDKitMolHash.so.1.2018.03.4 ../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 -lboost_serialization -lcairo ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 92%] Built target rdkit
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 92%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API && /usr/bin/c++  -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/test.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/test.cpp:11:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 92%] Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib -linchi ../../lib/libRDKitRDInchiLib.so.1.2018.03.4 -linchi ../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../lib/libRDKitDepictor.so.1.2018.03.4 ../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 92%] Built target testInchi
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
Scanning dependencies of target testReaction
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/testReaction.cpp
[ 92%] Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 92%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/SparseIntVect.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/ReactionFingerprints.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp:40:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 93%] Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
Scanning dependencies of target testEnumeration
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:378:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:   378 |   bool doLong = false;
BUILDSTDERR:       |        ^~~~~~
[ 93%] Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
[ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
BUILDSTDERR: In file included from /usr/include/boost/detail/endian.hpp:9,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/StreamOps.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/Catalog.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FilterCatalog.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:41:
BUILDSTDERR: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead
BUILDSTDERR:    11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include <boost/predef/other/endian.h> and use BOOST_ENDIAN_*_BYTE instead")
BUILDSTDERR:       |                                                                                                                                                                 ^
[ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Built target rdChemReactions
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DRxnTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/rxn_test1.cpp
[ 93%] Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.4 ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread -lcairo 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTest1
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/test1.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/test1.cpp: In function 'void testGithub983()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/test1.cpp:1299:16: warning: implicitly-declared 'RDKit::RWMol::RWMol(const RDKit::RWMol&)' is deprecated [-Wdeprecated-copy]
BUILDSTDERR:  1299 |     RWMol nm(*m);
BUILDSTDERR:       |                ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/GraphMol.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RDKitBase.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/test1.cpp:14:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RWMol.h:48:10: note: because 'RDKit::RWMol' has user-provided 'RDKit::RWMol& RDKit::RWMol::operator=(const RDKit::RWMol&)'
BUILDSTDERR:    48 |   RWMol &operator=(const RWMol &);
BUILDSTDERR:       |          ^~~~~~~~
[ 94%] Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMolDraw2D.so.1.2018.03.4 ../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread -lcairo 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_CAIRO_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings -isystem /usr/include/cairo  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
[ 94%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitMolDraw2D.so.1.2018.03.4 ../../../../lib/libRDKitChemReactions.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.03.4 ../../../../lib/libRDKitCatalogs.so.1.2018.03.4 ../../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../../lib/libRDKitFingerprints.so.1.2018.03.4 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 -lcairo ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread -lboost_serialization 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/testFMCS_Unit.cpp
[ 94%] Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFMCS
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 95%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
[ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 95%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 96%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test/testFMCS.cpp
[ 96%] Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 96%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/testMolHash.cpp
[ 97%] Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMolHash.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Built target testMolHash
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
[ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitMolHash.so.1.2018.03.4 ../../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
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make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
[ 98%] Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitMMPA.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 98%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 98%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitMMPA.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 98%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 98%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
BUILDSTDERR:   139 |   bool ok;
BUILDSTDERR:       |        ^~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:324:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   324 |   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:400:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   400 |   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:424:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   424 |   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:448:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   448 |   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:603:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   603 |     for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:676:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   676 |   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   705 |   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare]
BUILDSTDERR:   749 |   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:       |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:844:14: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:   844 | int main(int argc, const char* argv[]) {
BUILDSTDERR:       |          ~~~~^~~~
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/testStructChecker.cpp:844:32: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR:   844 | int main(int argc, const char* argv[]) {
BUILDSTDERR:       |                    ~~~~~~~~~~~~^~~~~~
[ 99%] Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitStructChecker.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 99%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target rdStructChecker
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 99%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/boost-numeric-bindings  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
[ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitStructChecker.so.1.2018.03.4 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../../lib/libRDKitDescriptors.so.1.2018.03.4 ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.03.4 ../../../../lib/libRDKitSubgraphs.so.1.2018.03.4 ../../../../lib/libRDKitMolTransforms.so.1.2018.03.4 ../../../../lib/libRDKitEigenSolvers.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 99%] Built target rdStructChecker
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
Scanning dependencies of target testRGroupDecomp
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 99%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp: In function 'void testMatchOnlyAtRgroupHs()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp:427:9: warning: unused variable 'res' [-Wunused-variable]
BUILDSTDERR:   427 |     int res = decomp.add(*mol);
BUILDSTDERR:       |         ^~~
[ 99%] Linking CXX executable testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib ../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.4 ../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 99%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 99%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.03.4 ../../../../lib/libRDKitFMCS.so.1.2018.03.4 ../../../../lib/libRDKitChemTransforms.so.1.2018.03.4 ../../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 99%] Built target rdRGroupDecomposition
[ 99%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
[ 99%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/SmilesWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/SmilesWriter.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[100%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/SDWriter.cpp
[100%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/TDTWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/SDWriter.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/TDTWriter.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[100%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/c++  -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/inchi -I/usr/include/python3.7m -I/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/PDBWriter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/PDBWriter.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
BUILDSTDERR:   470 |           " returning.");
BUILDSTDERR:       |                        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[100%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=zEC12 -mtune=z13 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--as-needed -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared  -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2018_03_4/python3/lib: ../../../lib/libRDKitFileParsers.so.1.2018.03.4 ../../../lib/libRDKitRDBoost.so.1.2018.03.4 -lpython3.7m -lboost_python37 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.03.4 ../../../lib/libRDKitDepictor.so.1.2018.03.4 ../../../lib/libRDKitSubstructMatch.so.1.2018.03.4 ../../../lib/libRDKitGraphMol.so.1.2018.03.4 ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.4 ../../../lib/libRDKitDataStructs.so.1.2018.03.4 ../../../lib/libRDKitRDGeneral.so.1.2018.03.4 -lpthread 
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[100%] Built target rdmolfiles
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/CMakeFiles 0
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2018_03_4/python3 ~/build/BUILD/rdkit-Release_2018_03_4
+ chrpath -d librdkit.so
~/build/BUILD/rdkit-Release_2018_03_4/python3 ~/build/BUILD/rdkit-Release_2018_03_4
~/build/BUILD/rdkit-Release_2018_03_4
+ popd
+ popd
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.TsDTDM
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x
~/build/BUILD/rdkit-Release_2018_03_4/python3 ~/build/BUILD/rdkit-Release_2018_03_4
+ cd rdkit-Release_2018_03_4
+ pushd python3
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x
/usr/bin/cmake -S/builddir/build/BUILD/rdkit-Release_2018_03_4/python3 -B/builddir/build/BUILD/rdkit-Release_2018_03_4/python3 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/CMakeFiles /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/CMakeFiles/progress.marks
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/rdkit/Chem/inchi.py
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make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
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make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[  4%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 10%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 10%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 11%] Built target Depictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 14%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 15%] Built target RDInchiLib
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 16%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 16%] Built target MolTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 19%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 19%] Built target Subgraphs
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 19%] Built target PartialCharges
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 21%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 21%] Built target testInchi
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 22%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 23%] Built target rdinchi
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/CoordGen /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'External/CoordGen/CMakeFiles/coordgen_support.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 23%] Built target coordgen_support
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 24%] Built target testRDValue
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 25%] Built target testDict
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 26%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 26%] Built target testMultiFPB
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 27%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 28%] Built target testDataStructs
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 29%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 29%] Built target testGrid
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 29%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 30%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 30%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 30%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 30%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 30%] Built target rdAlignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 31%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 32%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 36%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 37%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 38%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 39%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 40%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 41%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 41%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 41%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 42%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 43%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 43%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 43%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 43%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 44%] Built target hanoiTest
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 45%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 46%] Built target test-valgrind
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 46%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 46%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 47%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 47%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 47%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 47%] Built target resMolSupplierTest
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target graphmolTest1
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 48%] Built target smaTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 49%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 49%] Built target testTplParser
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 50%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 50%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 50%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 51%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 52%] Built target testSequence
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 53%] Built target testSubstructMatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 55%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 56%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 59%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 59%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 60%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 60%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 60%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 61%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 61%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 61%] Built target testSubgraphs2
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 62%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 62%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 63%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 64%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 65%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 65%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 65%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 66%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 66%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 66%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 66%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 66%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 67%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 67%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 67%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 67%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 67%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 68%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 69%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 70%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 70%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 70%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 71%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 72%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 72%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 73%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 73%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 73%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 73%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 74%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 75%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 76%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 77%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 77%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 77%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 78%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 80%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 81%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 82%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 83%] Built target Trajectory
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 84%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 85%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 87%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 87%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 87%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 88%] Built target rdtrajectory
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 90%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 90%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 93%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Built target rdmolops
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 94%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 95%] Built target rdMetricMatrixCalc
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 95%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 96%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 97%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[ 98%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
cd /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_4/python3 /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[2]: Nothing to be done for 'Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
[100%] Built target rdkit
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2018_03_4/python3/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2018_03_4/python3'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Avalon
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Avalon/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/AllChem.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/AtomPairs
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/AtomPairs/Pairs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/AtomPairs/Sheridan.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/AtomPairs/Torsions.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/AtomPairs/Utils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/AtomPairs/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/BRICS.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/BuildFragmentCatalog.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemUtils
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemUtils/AlignDepict.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemUtils/BulkTester.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemUtils/SDFToCSV.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemUtils/TemplateExpand.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemUtils/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemicalFeatures.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ChemicalForceFields.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Crippen.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/DSViewer.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Descriptors.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Descriptors3D.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/FreeSans.ttf
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/IPythonConsole.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/MolDrawing.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/SimilarityMaps.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/aggCanvas.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/cairoCanvas.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/canvasbase.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/mplCanvas.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/qtCanvas.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/spingCanvas.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EState
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EState/AtomTypes.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EState/EState.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EState/EState_VSA.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EState/Fingerprinter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EState/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EnumerateHeterocycles.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/EnumerateStereoisomers.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FastSDMolSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FeatFinderCLI.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FeatMaps
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FeatMaps/FeatMapParser.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FeatMaps/FeatMaps.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FeatMaps/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Features
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Features/FeatDirUtilsRD.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Features/ShowFeats.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Features/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FilterCatalog.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fingerprints
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fingerprints/MolSimilarity.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fingerprints/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fraggle
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fraggle/FraggleSim.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fraggle/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FragmentCatalog.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FragmentMatcher.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Fragments.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/FunctionalGroups.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/GraphDescriptors.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Graphs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Lipinski.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MACCSkeys.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MCS.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolCatalog.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolDb
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolDb/FingerprintUtils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolDb/Loader.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolDb/Loader_orig.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolDb/Loader_sa.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolDb/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolKey
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolKey/InchiInfo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolKey/MolKey.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolKey/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/MolSurf.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/PandasTools.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/PeriodicTable.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D/Generate.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D/Matcher.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D/SigFactory.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D/Utils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm2D/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm3D
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm3D/EmbedLib.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm3D/Pharmacophore.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Pharm3D/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/PropertyMol.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/PyMol.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/QED.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Randomize.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Recap.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/ReducedGraphs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/SATIS.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/SaltRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Scaffolds
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-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDInchiLib.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDInchiLib.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/inchi.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdinchi.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdinchi.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeneral.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeneral.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeneral.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/Exceptions.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/BadFileException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/BoostStartInclude.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/BoostEndInclude.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/Dict.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/FileParseException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/Invariant.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/RDAny.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/RDValue.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/RDValue-doublemagic.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/RDValue-taggedunion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/RDLog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/RDProps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/RDThreads.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/StreamOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/types.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/versions.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/LocaleSwitcher.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/Ranking.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hanoiSort.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hash/hash
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hash/hash/detail
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDBoost.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDBoost.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDBoost.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDBoost.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDBoost/Wrap.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDBoost/PySequenceHolder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDBoost/list_indexing_suite.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDBoost/python.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDBoost/boost_numpy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/rdBase.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/rdBase.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDataStructs.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDataStructs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDataStructs.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDataStructs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/base64.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/BitOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/BitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/BitVects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/DatastructsException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/FPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeometryLib.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeometryLib.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/Grid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/GridUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/point.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/Transform.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Numerics/SquareMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Numerics/SymmMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitAlignment.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitAlignment.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitAlignment.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitAlignment.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitEigenSolvers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitEigenSolvers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitOptimizer.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitOptimizer.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitOptimizer.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitOptimizer.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceField.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceField.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceField.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceField.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeometry.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeometry.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeometry.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeometry.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitCatalogs.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitCatalogs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitCatalogs.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitCatalogs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitGraphMol.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitGraphMol.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitGraphMol.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitGraphMol.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDepictor.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDepictor.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDepictor.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDepictor.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDepictor.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDepictor.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSmilesParse.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSmilesParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSmilesParse.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSmilesParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFileParsers.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFileParsers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFileParsers.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFileParsers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructMatch.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructMatch.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemReactions.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemReactions.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemReactions.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemReactions.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemReactions.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemReactions.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemTransforms.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemTransforms.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubgraphs.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubgraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubgraphs.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubgraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFilterCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFilterCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfiltercatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFragCatalog.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFragCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFragCatalog.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFragCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfragcatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfragcatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDescriptors.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDescriptors.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDescriptors.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDescriptors.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolDescriptors.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolDescriptors.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFingerprints.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFingerprints.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFingerprints.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFingerprints.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitPartialCharges.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitPartialCharges.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitPartialCharges.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitPartialCharges.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdPartialCharges.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolTransforms.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolTransforms.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolTransforms.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolTransforms.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceFieldHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeomHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeomHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDistGeom.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDistGeom.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolAlign.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolAlign.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolAlign.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolAlign.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolAlign.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolAlign.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitShapeHelpers.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitShapeHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolCatalog.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolCatalog.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolCatalog.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolDraw2D.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolDraw2D.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFMCS.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFMCS.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFMCS.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFMCS.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolHash.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolHash.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolHash.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolHash.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMMPA.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMMPA.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMMPA.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMMPA.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitStructChecker.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitStructChecker.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitStructChecker.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitStructChecker.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitReducedGraphs.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitReducedGraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitTrajectory.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitTrajectory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitTrajectory.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitTrajectory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructLibrary.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructLibrary.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRGroupDecomposition.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSLNParse.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSLNParse.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSLNParse.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSLNParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdchem.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdchem.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolops.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolops.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdqueries.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdqueries.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolfiles.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdtrajectory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitInfoTheory.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitInfoTheory.so.1
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitInfoTheory.so.1.2018.03.4" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitInfoTheory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so" to ""
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.4
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Set runtime path of "/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to ""
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/RDPaths.py
~/build/BUILD/rdkit-Release_2018_03_4/python3/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2018_03_4/python3 ~/build/BUILD/rdkit-Release_2018_03_4
+ pushd Code/PgSQL/rdkit
+ install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/pgsql/rdkit.so
+ install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/pgsql/extension/rdkit.control
+ install -D rdkit--3.5.sql /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/pgsql/extension/rdkit--3.5.sql
~/build/BUILD/rdkit-Release_2018_03_4/python3 ~/build/BUILD/rdkit-Release_2018_03_4
~/build/BUILD/rdkit-Release_2018_03_4
+ popd
+ popd
+ rm -r /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x//usr/share/RDKit
+ FMCS=/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python3@d}' /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/fmcs/fmcs
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2018.03.4-4.fc30 --unique-debug-suffix -2018.03.4-4.fc30.s390x --unique-debug-src-base rdkit-2018.03.4-4.fc30.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rdkit-Release_2018_03_4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdchem.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolops.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdqueries.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdmolfiles.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdtrajectory.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdinchi.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDepictor.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdChemReactions.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdfragcatalog.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolDescriptors.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdPartialCharges.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolTransforms.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdDistGeom.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolAlign.so
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extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdShapeHelpers.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolCatalog.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdFMCS.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMolHash.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdMMPA.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdStructChecker.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Chem/rdSLNParse.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DataStructs/cDataStructs.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ForceField/rdForceField.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Geometry/rdGeometry.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/Data/cQuantize.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/Numerics/rdAlignment.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/rdBase.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7/site-packages/rdkit/rdBase.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDInchiLib.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeneral.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeneral.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDBoost.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDBoost.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDataStructs.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDataStructs.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRDGeometryLib.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitAlignment.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitAlignment.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitEigenSolvers.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitOptimizer.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitOptimizer.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceField.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceField.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeometry.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeometry.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitCatalogs.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitCatalogs.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitGraphMol.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitGraphMol.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDepictor.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDepictor.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSmilesParse.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSmilesParse.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFileParsers.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFileParsers.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructMatch.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemReactions.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemReactions.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemTransforms.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemTransforms.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubgraphs.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubgraphs.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFilterCatalog.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFragCatalog.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFragCatalog.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDescriptors.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDescriptors.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFingerprints.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFingerprints.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitPartialCharges.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitPartialCharges.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolTransforms.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolTransforms.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitForceFieldHelpers.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitDistGeomHelpers.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolAlign.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolAlign.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolChemicalFeatures.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitShapeHelpers.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolCatalog.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolCatalog.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolDraw2D.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFMCS.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitFMCS.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolHash.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMolHash.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMMPA.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitMMPA.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitStructChecker.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitStructChecker.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitReducedGraphs.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitTrajectory.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitTrajectory.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSubstructLibrary.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitRGroupDecomposition.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSLNParse.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitSLNParse.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitInfoTheory.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitInfoTheory.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.4
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/libRDKitChemicalFeatures.so.1.2018.03.4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/pgsql/rdkit.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/pgsql/rdkit.so
/usr/lib/rpm/sepdebugcrcfix: Updated 82 CRC32s, 0 CRC32s did match.
BUILDSTDERR: 13197 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib64/python3.7 using /usr/bin/python3.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/lib/debug/usr/lib64/python3.7 using /usr/bin/python3.7
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
BUILDSTDERR: *** WARNING: ./usr/share/pgsql/extension/rdkit.control is executable but has empty or no shebang, removing executable bit
BUILDSTDERR: *** WARNING: ./usr/share/pgsql/extension/rdkit--3.5.sql is executable but has empty or no shebang, removing executable bit
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.dtlLNR
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_4
+ exit 0
Processing files: rdkit-2018.03.4-4.fc30.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.gVUspW
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_4
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/doc/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/doc/rdkit
+ cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/doc/rdkit
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.cwUCEg
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_4
+ LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/licenses/rdkit
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/licenses/rdkit
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/licenses/rdkit
+ exit 0
Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) rdkit = 2018.03.4-4.fc30 rdkit(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld64.so.1()(64bit) ld64.so.1(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libboost_python37.so.1.69.0()(64bit) libboost_serialization.so.1.69.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2)(64bit) libpython3.7m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-devel-2018.03.4-4.fc30.s390x
Provides: rdkit-devel = 2018.03.4-4.fc30 rdkit-devel(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit)
Processing files: rdkit-doc-2018.03.4-4.fc30.noarch
Processing files: python3-rdkit-2018.03.4-4.fc30.s390x
Provides: python3-rdkit = 2018.03.4-4.fc30 python3-rdkit(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld64.so.1()(64bit) ld64.so.1(GLIBC_2.3)(64bit) libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libboost_python37.so.1.69.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2)(64bit) libpython3.7m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.7 rtld(GNU_HASH)
Processing files: rdkit-postgresql-2018.03.4-4.fc30.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.zJ6U4N
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_4
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/doc/rdkit-postgresql
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/doc/rdkit-postgresql
+ cp -pr python3/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x/usr/share/doc/rdkit-postgresql
+ exit 0
Provides: librdkit.so()(64bit) rdkit-postgresql = 2018.03.4-4.fc30 rdkit-postgresql(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-debugsource-2018.03.4-4.fc30.s390x
Provides: rdkit-debugsource = 2018.03.4-4.fc30 rdkit-debugsource(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: rdkit-debuginfo-2018.03.4-4.fc30.s390x
Provides: debuginfo(build-id) = 058c29a8977447f93899078e33ed99ff3ee0e155 debuginfo(build-id) = 06643d7845f2c8317697bda86b31365a2bb00412 debuginfo(build-id) = 0decad5df6dbafd663e4167598cd55112e7f202e debuginfo(build-id) = 123b8f023641ac34906f1d7b7868a33fdb582595 debuginfo(build-id) = 14c806228e33cfd0ced49a85286ad0c4575da9cf debuginfo(build-id) = 1e1a1c18310f0745da7043efcd5002aaf04dfd44 debuginfo(build-id) = 1eda15842126761696f2ff0d50d030ceb4f79fd5 debuginfo(build-id) = 238fe0338426d46b4373f05967dcef62ed68d078 debuginfo(build-id) = 2a6f7e973a29aef1e38ed24000a77d26297ba123 debuginfo(build-id) = 2bb0a0197505f116b23e9745bca00fb385bbace3 debuginfo(build-id) = 2e1fea719a982283596d78556ba3744a28288984 debuginfo(build-id) = 2e332951e0117e36aa86812abf7aa162545f261c debuginfo(build-id) = 34970dd89e2ecf86f15341302a40956e19cbb003 debuginfo(build-id) = 3d9d2a4523167fdbb35d8a401eb49ece8761bb23 debuginfo(build-id) = 403506ea059ccd6733cd2caa180eecedc9cd74a8 debuginfo(build-id) = 4071e7be3018b9dc5707b509b0fde20a56ad7f96 debuginfo(build-id) = 4a71b3925689cd7f2e4a512a878bb0e28e96639c debuginfo(build-id) = 53d8801df811c63e739d504aee9dbf61a96aaeb3 debuginfo(build-id) = 5aa9f37a7c43e4709910f3370c5fdc3f5e3b0dfe debuginfo(build-id) = 5eca270a09d238e27bda1bcc1d833ae567492fb5 debuginfo(build-id) = 5f08c5240c7cb0994cfb281210031253c1f4d12b debuginfo(build-id) = 642579bd768f5d1f5990068e07616b554b88469c debuginfo(build-id) = 65aa946f5bb1df11846c298427687aeb7d09d4f7 debuginfo(build-id) = 6a85ac51da8dcf8f647078830a10ba5006a1f3d2 debuginfo(build-id) = 6c8b3582d8acc5a370b8d0b06b1bb190db335020 debuginfo(build-id) = 6ec2a919c3e3361fca0415df40dc60b27aa7cba8 debuginfo(build-id) = 712ee9049ade740b53495d121ea94815e65a35d7 debuginfo(build-id) = 806b124435c6d40f73b7428775eb24e422457e42 debuginfo(build-id) = 81cd6275d870e999326fd28bcd7fa8b1ae71b5fb debuginfo(build-id) = 96e4437af9a7eeb56c819910239bced2f475fc71 debuginfo(build-id) = b55701a119f54452a81b0d5ab476a1d8ff84460c debuginfo(build-id) = b81fb3ff998aad488f0ccbe19027bbf407e99209 debuginfo(build-id) = c2c8df2f6a82d66c8f9149634384887afde9a3fc debuginfo(build-id) = c34c25c27ae6c897f7d86753ab780d4400e25a7d debuginfo(build-id) = cdf9db8c0bb1792d44a51aa698af68c6ba2bab03 debuginfo(build-id) = d8b092a4c3cec07ee34997ed541028307afd74db debuginfo(build-id) = db8557439a1c496d3305d2becebc599c1b713bf5 debuginfo(build-id) = e44b60b37ea9900523ff538202a6c0cc3e550a2c debuginfo(build-id) = e8a577feefa8def9131782cd5f1c6499d11b34b8 debuginfo(build-id) = e9cda0241a70d2ad6f1cdf71913f973de69db031 debuginfo(build-id) = f9de001cf94d3f69959a168bf698783163aa4138 debuginfo(build-id) = fb8f118dd6f952a997304f56d0cdade0ccf2c758 debuginfo(build-id) = fbb22f88098f67cda77f316c5381f62a958f1903 rdkit-debuginfo = 2018.03.4-4.fc30 rdkit-debuginfo(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(s390-64) = 2018.03.4-4.fc30
Processing files: python3-rdkit-debuginfo-2018.03.4-4.fc30.s390x
Provides: debuginfo(build-id) = 08a3b160c784b20677bfebefab935607aa39a69b debuginfo(build-id) = 11cb9f55329551ff32f34af530288e72b5517f4e debuginfo(build-id) = 209ce29f0607a09ad6c92c9db2764e875bafe2ba debuginfo(build-id) = 2480b161b9888c7e7c7956673b90ff0103b8e67e debuginfo(build-id) = 26842d472fed2a7acb5210a3bc6b66b4dbee07c8 debuginfo(build-id) = 2ac650179187b772cb13478ba06733f98ab91fcd debuginfo(build-id) = 2b2a75ffc1dd52c76d45472a35b70bd17f5e91b7 debuginfo(build-id) = 2ddb82c17840235dfb6a93a19bdc62f1197ea6e0 debuginfo(build-id) = 2eacb10a5a2867c4d91e9e9b673425a574fd5ac7 debuginfo(build-id) = 33c3508c8437fda7ed091008efc7654d5fa3a737 debuginfo(build-id) = 361bc20dd75cd237205e98c094f506f9364f5547 debuginfo(build-id) = 4220d733b203c8904b9b0330ef39e6e496153263 debuginfo(build-id) = 50143e88c3dbabd6e07876a64422038766aeadc8 debuginfo(build-id) = 5377ae4fb7022de675fa221b4dfe4d3a2144cc16 debuginfo(build-id) = 56c569b5d22b124cb898e974ee96632c480d2f6e debuginfo(build-id) = 650d0a37f0953db68ac733cf7fadf4d137d621ce debuginfo(build-id) = 66d6f05b7e5583a3855e3177d2de3a6212f642eb debuginfo(build-id) = 7544dc18f59cfc93d0118354bc1a8e2b93b71081 debuginfo(build-id) = 83b661513fbce7a9b16fc8378f2b8235753e2f8a debuginfo(build-id) = 8998483bc3369d0a1149383f5ad736b9120a61bb debuginfo(build-id) = 8df6121a218c70c7a134cfff2ae4008f8d23bc79 debuginfo(build-id) = 93074c688b744dd66514ae517f4361ffb4bb9773 debuginfo(build-id) = 9608eab75cd7a4b43a5ea04932005a0812d5aed7 debuginfo(build-id) = 987b56372097dfb07e0d9f10cbbd2062ac642018 debuginfo(build-id) = ac6536925f0adee6594bfe25e9c93df1eb1c0901 debuginfo(build-id) = ae1c8a6063538659ad04bb2ba13b7adf48043883 debuginfo(build-id) = b4715e38dd4a1cc392e6c213d867592692003273 debuginfo(build-id) = bed51895d7873b16fc8c89d737035ac9b9f823ce debuginfo(build-id) = c046d0b15a052a6652438b9d70307b818b931217 debuginfo(build-id) = c5d34c49ac3eca8538729c6507d934cf987f18b5 debuginfo(build-id) = cdf26681c86af0231e79bf6f315401fc4d39bffa debuginfo(build-id) = d47e4c2b178d9960b7e0f7a3ee4a5379e51d6111 debuginfo(build-id) = d86755cdb29a88fb7b8f501c01e7e3a7acd8a7ae debuginfo(build-id) = e3fb32d0f66f2285260ca980350eef1902a0261d debuginfo(build-id) = e8ef4a0fa4874d59d918b358e6c08e3cef7d85bd debuginfo(build-id) = f4d64c046627cfe86aa31fe126c103f7f40adeaf debuginfo(build-id) = f5c85778ddb00063da88bfdb8fcde7b3860a9cfa debuginfo(build-id) = ff71c1bdaf929966dda08721d0c5a330a2e9dd02 python3-rdkit-debuginfo = 2018.03.4-4.fc30 python3-rdkit-debuginfo(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(s390-64) = 2018.03.4-4.fc30
Processing files: rdkit-postgresql-debuginfo-2018.03.4-4.fc30.s390x
Provides: debuginfo(build-id) = 9c11ba5dde1807c689495d6c29a36519ff455ab3 rdkit-postgresql-debuginfo = 2018.03.4-4.fc30 rdkit-postgresql-debuginfo(s390-64) = 2018.03.4-4.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: rdkit-debugsource(s390-64) = 2018.03.4-4.fc30
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x
Wrote: /builddir/build/RPMS/rdkit-2018.03.4-4.fc30.s390x.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2018.03.4-4.fc30.s390x.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2018.03.4-4.fc30.noarch.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-2018.03.4-4.fc30.s390x.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2018.03.4-4.fc30.s390x.rpm
Wrote: /builddir/build/RPMS/rdkit-debugsource-2018.03.4-4.fc30.s390x.rpm
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2018.03.4-4.fc30.s390x.rpm
Wrote: /builddir/build/RPMS/python3-rdkit-debuginfo-2018.03.4-4.fc30.s390x.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-debuginfo-2018.03.4-4.fc30.s390x.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.gq17Ya
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2018_03_4
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2018.03.4-4.fc30.s390x
+ exit 0
Child return code was: 0