Mock Version: 2.6 Mock Version: 2.6 Mock Version: 2.6 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'], chrootPath='/var/lib/mock/f33-build-24289762-2509947/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1606348800 Wrote: /builddir/build/SRPMS/python-lfpy-2.1.2-1.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'], chrootPath='/var/lib/mock/f33-build-24289762-2509947/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1606348800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QFNJiJ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf LFPy-2.1.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/LFPy-2.1.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd LFPy-2.1.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -rf LFPy.egg-info + sed -i '/mpi4py/ d' setup.py ++ find . -type f -name '*.py' + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/__init__.py + touch -r ./LFPy/__init__.py ./LFPy/__init__.py.new + mv ./LFPy/__init__.py.new ./LFPy/__init__.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/alias_method.py + touch -r ./LFPy/alias_method.py ./LFPy/alias_method.py.new + mv ./LFPy/alias_method.py.new ./LFPy/alias_method.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/cell.py + touch -r ./LFPy/cell.py ./LFPy/cell.py.new + mv ./LFPy/cell.py.new ./LFPy/cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/eegmegcalc.py + touch -r ./LFPy/eegmegcalc.py ./LFPy/eegmegcalc.py.new + mv ./LFPy/eegmegcalc.py.new ./LFPy/eegmegcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/inputgenerators.py + touch -r ./LFPy/inputgenerators.py ./LFPy/inputgenerators.py.new + mv ./LFPy/inputgenerators.py.new ./LFPy/inputgenerators.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/lfpcalc.py + touch -r ./LFPy/lfpcalc.py ./LFPy/lfpcalc.py.new + mv ./LFPy/lfpcalc.py.new ./LFPy/lfpcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/network.py + touch -r ./LFPy/network.py ./LFPy/network.py.new + mv ./LFPy/network.py.new ./LFPy/network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/pointprocess.py + touch -r ./LFPy/pointprocess.py ./LFPy/pointprocess.py.new + mv ./LFPy/pointprocess.py.new ./LFPy/pointprocess.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/recextelectrode.py + touch -r ./LFPy/recextelectrode.py ./LFPy/recextelectrode.py.new + mv ./LFPy/recextelectrode.py.new ./LFPy/recextelectrode.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/run_simulation.py + touch -r ./LFPy/run_simulation.py ./LFPy/run_simulation.py.new + mv ./LFPy/run_simulation.py.new ./LFPy/run_simulation.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/templatecell.py + touch -r ./LFPy/templatecell.py ./LFPy/templatecell.py.new + mv ./LFPy/templatecell.py.new ./LFPy/templatecell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/__init__.py + touch -r ./LFPy/test/__init__.py ./LFPy/test/__init__.py.new + mv ./LFPy/test/__init__.py.new ./LFPy/test/__init__.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/common.py + touch -r ./LFPy/test/common.py ./LFPy/test/common.py.new + mv ./LFPy/test/common.py.new ./LFPy/test/common.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_alias_method.py + touch -r ./LFPy/test/test_alias_method.py ./LFPy/test/test_alias_method.py.new + mv ./LFPy/test/test_alias_method.py.new ./LFPy/test/test_alias_method.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_cell.py + touch -r ./LFPy/test/test_cell.py ./LFPy/test/test_cell.py.new + mv ./LFPy/test/test_cell.py.new ./LFPy/test/test_cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_eegmegcalc.py + touch -r ./LFPy/test/test_eegmegcalc.py ./LFPy/test/test_eegmegcalc.py.new + mv ./LFPy/test/test_eegmegcalc.py.new ./LFPy/test/test_eegmegcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_imem.py + touch -r ./LFPy/test/test_imem.py ./LFPy/test/test_imem.py.new + mv ./LFPy/test/test_imem.py.new ./LFPy/test/test_imem.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_inputgenerators.py + touch -r ./LFPy/test/test_inputgenerators.py ./LFPy/test/test_inputgenerators.py.new + mv ./LFPy/test/test_inputgenerators.py.new ./LFPy/test/test_inputgenerators.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_lfpcalc.py + touch -r ./LFPy/test/test_lfpcalc.py ./LFPy/test/test_lfpcalc.py.new + mv ./LFPy/test/test_lfpcalc.py.new ./LFPy/test/test_lfpcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_misc.py + touch -r ./LFPy/test/test_misc.py ./LFPy/test/test_misc.py.new + mv ./LFPy/test/test_misc.py.new ./LFPy/test/test_misc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_morphology_import.py + touch -r ./LFPy/test/test_morphology_import.py ./LFPy/test/test_morphology_import.py.new + mv ./LFPy/test/test_morphology_import.py.new ./LFPy/test/test_morphology_import.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_network.py + touch -r ./LFPy/test/test_network.py ./LFPy/test/test_network.py.new + mv ./LFPy/test/test_network.py.new ./LFPy/test/test_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_networkcell.py + touch -r ./LFPy/test/test_networkcell.py ./LFPy/test/test_networkcell.py.new + mv ./LFPy/test/test_networkcell.py.new ./LFPy/test/test_networkcell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_pointprocess.py + touch -r ./LFPy/test/test_pointprocess.py ./LFPy/test/test_pointprocess.py.new + mv ./LFPy/test/test_pointprocess.py.new ./LFPy/test/test_pointprocess.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_recextelectrode.py + touch -r ./LFPy/test/test_recextelectrode.py ./LFPy/test/test_recextelectrode.py.new + mv ./LFPy/test/test_recextelectrode.py.new ./LFPy/test/test_recextelectrode.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_templatecell.py + touch -r ./LFPy/test/test_templatecell.py ./LFPy/test/test_templatecell.py.new + mv ./LFPy/test/test_templatecell.py.new ./LFPy/test/test_templatecell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_tools.py + touch -r ./LFPy/test/test_tools.py ./LFPy/test/test_tools.py.new + mv ./LFPy/test/test_tools.py.new ./LFPy/test/test_tools.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/tools.py + touch -r ./LFPy/tools.py ./LFPy/tools.py.new + mv ./LFPy/tools.py.new ./LFPy/tools.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/version.py + touch -r ./LFPy/version.py ./LFPy/version.py.new + mv ./LFPy/version.py.new ./LFPy/version.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network.py + touch -r ./examples/bioRxiv281717/example_parallel_network.py ./examples/bioRxiv281717/example_parallel_network.py.new + mv ./examples/bioRxiv281717/example_parallel_network.py.new ./examples/bioRxiv281717/example_parallel_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_methods.py + touch -r ./examples/bioRxiv281717/example_parallel_network_methods.py ./examples/bioRxiv281717/example_parallel_network_methods.py.new + mv ./examples/bioRxiv281717/example_parallel_network_methods.py.new ./examples/bioRxiv281717/example_parallel_network_methods.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_parameters.py + touch -r ./examples/bioRxiv281717/example_parallel_network_parameters.py ./examples/bioRxiv281717/example_parallel_network_parameters.py.new + mv ./examples/bioRxiv281717/example_parallel_network_parameters.py.new ./examples/bioRxiv281717/example_parallel_network_parameters.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_plotting.py + touch -r ./examples/bioRxiv281717/example_parallel_network_plotting.py ./examples/bioRxiv281717/example_parallel_network_plotting.py.new + mv ./examples/bioRxiv281717/example_parallel_network_plotting.py.new ./examples/bioRxiv281717/example_parallel_network_plotting.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_2.py + touch -r ./examples/bioRxiv281717/figure_2.py ./examples/bioRxiv281717/figure_2.py.new + mv ./examples/bioRxiv281717/figure_2.py.new ./examples/bioRxiv281717/figure_2.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_4.py + touch -r ./examples/bioRxiv281717/figure_4.py ./examples/bioRxiv281717/figure_4.py.new + mv ./examples/bioRxiv281717/figure_4.py.new ./examples/bioRxiv281717/figure_4.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_5.py + touch -r ./examples/bioRxiv281717/figure_5.py ./examples/bioRxiv281717/figure_5.py.new + mv ./examples/bioRxiv281717/figure_5.py.new ./examples/bioRxiv281717/figure_5.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_6.py + touch -r ./examples/bioRxiv281717/figure_6.py ./examples/bioRxiv281717/figure_6.py.new + mv ./examples/bioRxiv281717/figure_6.py.new ./examples/bioRxiv281717/figure_6.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/figure_7_8.py + touch -r ./examples/bioRxiv281717/figure_7_8/figure_7_8.py ./examples/bioRxiv281717/figure_7_8/figure_7_8.py.new + mv ./examples/bioRxiv281717/figure_7_8/figure_7_8.py.new ./examples/bioRxiv281717/figure_7_8/figure_7_8.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_ECoG.py + touch -r ./examples/example_ECoG.py ./examples/example_ECoG.py.new + mv ./examples/example_ECoG.py.new ./examples/example_ECoG.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_ECoG_4sphere.py + touch -r ./examples/example_ECoG_4sphere.py ./examples/example_ECoG_4sphere.py.new + mv ./examples/example_ECoG_4sphere.py.new ./examples/example_ECoG_4sphere.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_EEG.py + touch -r ./examples/example_EEG.py ./examples/example_EEG.py.new + mv ./examples/example_EEG.py.new ./examples/example_EEG.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_EPFL_neurons.py + touch -r ./examples/example_EPFL_neurons.py ./examples/example_EPFL_neurons.py.new + mv ./examples/example_EPFL_neurons.py.new ./examples/example_EPFL_neurons.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_LFPyCellTemplate.py + touch -r ./examples/example_LFPyCellTemplate.py ./examples/example_LFPyCellTemplate.py.new + mv ./examples/example_LFPyCellTemplate.py.new ./examples/example_LFPyCellTemplate.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_MEA.py + touch -r ./examples/example_MEA.py ./examples/example_MEA.py.new + mv ./examples/example_MEA.py.new ./examples/example_MEA.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_anisotropy.py + touch -r ./examples/example_anisotropy.py ./examples/example_anisotropy.py.new + mv ./examples/example_anisotropy.py.new ./examples/example_anisotropy.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_loadL5bPCmodelsEH.py + touch -r ./examples/example_loadL5bPCmodelsEH.py ./examples/example_loadL5bPCmodelsEH.py.new + mv ./examples/example_loadL5bPCmodelsEH.py.new ./examples/example_loadL5bPCmodelsEH.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_mpi.py + touch -r ./examples/example_mpi.py ./examples/example_mpi.py.new + mv ./examples/example_mpi.py.new ./examples/example_mpi.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_mpi_2.py + touch -r ./examples/example_mpi_2.py ./examples/example_mpi_2.py.new + mv ./examples/example_mpi_2.py.new ./examples/example_mpi_2.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network.py + touch -r ./examples/example_network/example_network.py ./examples/example_network/example_network.py.new + mv ./examples/example_network/example_network.py.new ./examples/example_network/example_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_cell.py + touch -r ./examples/example_network/example_network_cell.py ./examples/example_network/example_network_cell.py.new + mv ./examples/example_network/example_network_cell.py.new ./examples/example_network/example_network_cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_population.py + touch -r ./examples/example_network/example_network_population.py ./examples/example_network/example_network_population.py.new + mv ./examples/example_network/example_network_population.py.new ./examples/example_network/example_network_population.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_suppl.py + touch -r ./examples/example_suppl.py ./examples/example_suppl.py.new + mv ./examples/example_suppl.py.new ./examples/example_suppl.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/mazzoni_example/ref_sim.py + touch -r ./examples/mazzoni_example/ref_sim.py ./examples/mazzoni_example/ref_sim.py.new + mv ./examples/mazzoni_example/ref_sim.py.new ./examples/mazzoni_example/ref_sim.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/mazzoni_example/single_cell.py + touch -r ./examples/mazzoni_example/single_cell.py ./examples/mazzoni_example/single_cell.py.new + mv ./examples/mazzoni_example/single_cell.py.new ./examples/mazzoni_example/single_cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/nsg_example/nsg_example.py + touch -r ./examples/nsg_example/nsg_example.py ./examples/nsg_example/nsg_example.py.new + mv ./examples/nsg_example/nsg_example.py.new ./examples/nsg_example/nsg_example.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./setup.py + touch -r ./setup.py ./setup.py.new + mv ./setup.py.new ./setup.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.oZMCTH + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.1.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' which: no xcrun in (/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin) Creating x86_64 directory for .o files. /builddir/build/BUILD/LFPy-2.1.2/LFPy/test expsyni.mod sinsyn.mod expsyni.mod sinsyn.mod mkdir -p x86_64 -> Compiling mod_func.c cc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I.. -I/usr/include -fPIC -c mod_func.c -o mod_func.o -> NMODL expsyni.mod MODLUNIT=/usr/share/nrn/lib/nrnunits.lib \ /usr/bin/nocmodl expsyni.mod -> NMODL sinsyn.mod MODLUNIT=/usr/share/nrn/lib/nrnunits.lib \ /usr/bin/nocmodl sinsyn.mod Translating expsyni.mod into expsyni.c Thread Safe Translating sinsyn.mod into sinsyn.c Thread Safe -> Compiling x86_64/expsyni.c (cd .. ; cc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I.. -I/usr/include -fPIC -c x86_64/expsyni.c -o x86_64/expsyni.o) -> Compiling x86_64/sinsyn.c (cd .. ; cc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I.. -I/usr/include -fPIC -c x86_64/sinsyn.c -o x86_64/sinsyn.o) x86_64/sinsyn.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } x86_64/expsyni.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } x86_64/sinsyn.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | 0, 0 | { 123 | }; | } x86_64/expsyni.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | "exp_current", _hoc_exp_current, | { } 123 | "update_queue", _hoc_update_queue, | { } 124 | 0, 0 | { 125 | }; | } x86_64/sinsyn.c:128:44: warning: missing braces around initializer [-Wmissing-braces] 128 | static HocParmLimits _hoc_parm_limits[] = { | ^ 129 | 0,0,0 | { { 130 | }; | }} x86_64/expsyni.c:132:44: warning: missing braces around initializer [-Wmissing-braces] 132 | static HocParmLimits _hoc_parm_limits[] = { | ^ 133 | "tau", 1e-09, 1e+09, | { { }} 134 | 0,0,0 | { { 135 | }; | }} x86_64/expsyni.c:136:42: warning: missing braces around initializer [-Wmissing-braces] 136 | static HocParmUnits _hoc_parm_units[] = { | ^ 137 | "tau", "ms", | { } 138 | "i", "nA", | { } 139 | 0,0 | { 140 | }; | } x86_64/sinsyn.c:131:42: warning: missing braces around initializer [-Wmissing-braces] 131 | static HocParmUnits _hoc_parm_units[] = { | ^ 132 | "del", "ms", | { } 133 | "dur", "ms", | { } 134 | "pkamp", "nA", | { } 135 | "freq", "Hz", | { } 136 | "bias", "nA", | { } 137 | "i", "nA", | { } 138 | 0,0 | { 139 | }; | } x86_64/expsyni.c:142:33: warning: missing braces around initializer [-Wmissing-braces] 142 | static DoubScal hoc_scdoub[] = { | ^ 143 | 0,0 | { 144 | }; | } x86_64/sinsyn.c:141:33: warning: missing braces around initializer [-Wmissing-braces] 141 | static DoubScal hoc_scdoub[] = { | ^ 142 | "PI_SinSyn", &PI_SinSyn, | { } 143 | 0,0 | { 144 | }; | } x86_64/expsyni.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } x86_64/sinsyn.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } x86_64/expsyni.c: In function ‘nrn_alloc’: x86_64/expsyni.c:172:8: warning: unused variable ‘prop_ion’ [-Wunused-variable] 172 | Prop *prop_ion; | ^~~~~~~~ x86_64/sinsyn.c: In function ‘nrn_alloc’: x86_64/sinsyn.c:176:8: warning: unused variable ‘prop_ion’ [-Wunused-variable] 176 | Prop *prop_ion; | ^~~~~~~~ x86_64/expsyni.c: In function ‘_expsyni_reg’: x86_64/expsyni.c:201:6: warning: unused variable ‘_vectorized’ [-Wunused-variable] 201 | int _vectorized = 1; | ^~~~~~~~~~~ x86_64/sinsyn.c: In function ‘_sinsyn_reg’: x86_64/sinsyn.c:210:6: warning: unused variable ‘_vectorized’ [-Wunused-variable] 210 | int _vectorized = 1; | ^~~~~~~~~~~ x86_64/expsyni.c: In function ‘update_queue_ExpSynI’: x86_64/expsyni.c:233:9: warning: unused variable ‘_lk’ [-Wunused-variable] 233 | double _lk ; | ^~~ x86_64/sinsyn.c: In function ‘_net_receive__SinSyn’: x86_64/sinsyn.c:241:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ x86_64/sinsyn.c:241:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ x86_64/sinsyn.c: In function ‘initmodel’: x86_64/sinsyn.c:248:18: warning: unused variable ‘_save’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~~~~ x86_64/sinsyn.c:248:7: warning: unused variable ‘_i’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~ x86_64/expsyni.c: In function ‘_net_receive__ExpSynI’: x86_64/expsyni.c:278:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ x86_64/expsyni.c:278:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ x86_64/expsyni.c: In function ‘initmodel’: x86_64/expsyni.c:293:18: warning: unused variable ‘_save’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~~~~ x86_64/expsyni.c:293:7: warning: unused variable ‘_i’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~ x86_64/sinsyn.c: In function ‘_nrn_jacob__SinSyn’: x86_64/sinsyn.c:337:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ x86_64/expsyni.c: In function ‘_nrn_current__ExpSynI’: x86_64/sinsyn.c:337:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ x86_64/expsyni.c:328:11: warning: unused variable ‘_lk’ [-Wunused-variable] 328 | double _lk , _lexpired_spikes , _lx ; | ^~~ x86_64/sinsyn.c: In function ‘_initlists’: x86_64/sinsyn.c:368:6: warning: unused variable ‘_i’ [-Wunused-variable] 368 | int _i; static int _first = 1; | ^~ x86_64/sinsyn.c:367:21: warning: unused variable ‘_p’ [-Wunused-variable] 367 | double _x; double* _p = &_x; | ^~ x86_64/expsyni.c: In function ‘_nrn_jacob__ExpSynI’: x86_64/expsyni.c:386:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ x86_64/expsyni.c:386:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ x86_64/expsyni.c: In function ‘_initlists’: x86_64/expsyni.c:417:6: warning: unused variable ‘_i’ [-Wunused-variable] 417 | int _i; static int _first = 1; | ^~ x86_64/expsyni.c:416:21: warning: unused variable ‘_p’ [-Wunused-variable] 416 | double _x; double* _p = &_x; | ^~ At top level: x86_64/sinsyn.c:364:13: warning: ‘terminal’ defined but not used [-Wunused-function] 364 | static void terminal(){} | ^~~~~~~~ x86_64/sinsyn.c:238:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 238 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ x86_64/sinsyn.c:236:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 236 | static int _ninits = 0; | ^~~~~~~ x86_64/sinsyn.c:235:12: warning: ‘error’ defined but not used [-Wunused-variable] 235 | static int error; | ^~~~~ x86_64/sinsyn.c:233:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 233 | static char *modelname = ""; | ^~~~~~~~~ x86_64/sinsyn.c:232:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 232 | static int _reset; | ^~~~~~ x86_64/sinsyn.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ x86_64/sinsyn.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ x86_64/sinsyn.c:71:16: warning: ‘_extcall_thread’ defined but not used [-Wunused-variable] 71 | static Datum* _extcall_thread; | ^~~~~~~~~~~~~~~ At top level: x86_64/expsyni.c:413:13: warning: ‘terminal’ defined but not used [-Wunused-function] 413 | static void terminal(){} | ^~~~~~~~ x86_64/expsyni.c:229:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 229 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ x86_64/expsyni.c:227:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 227 | static int _ninits = 0; | ^~~~~~~ x86_64/expsyni.c:226:12: warning: ‘error’ defined but not used [-Wunused-variable] 226 | static int error; | ^~~~~ x86_64/expsyni.c:224:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 224 | static char *modelname = "Exponential-function synaptic current, with NET_RECEIVE"; | ^~~~~~~~~ x86_64/expsyni.c:223:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 223 | static int _reset; | ^~~~~~ x86_64/expsyni.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ x86_64/expsyni.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ x86_64/expsyni.c: In function ‘update_queue_ExpSynI’: x86_64/expsyni.c:240:8: warning: ‘_lupdate_queue’ is used uninitialized in this function [-Wuninitialized] 240 | return _lupdate_queue; | ^~~~~~~~~~~~~~ x86_64/sinsyn.c: In function ‘nrn_alloc’: x86_64/sinsyn.c:197:17: warning: ‘_ppvar’ may be used uninitialized in this function [-Wmaybe-uninitialized] 197 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ x86_64/expsyni.c: In function ‘nrn_alloc’: x86_64/expsyni.c:188:17: warning: ‘_ppvar’ may be used uninitialized in this function [-Wmaybe-uninitialized] 188 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ => LINKING library x86_64/libnrnmech.so Mod files: expsyni.mod sinsyn.mod (cd .. ; g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -shared -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -I /usr/include -o x86_64/libnrnmech.so -Wl,-soname,libnrnmech.so \ x86_64/mod_func.o x86_64/expsyni.o x86_64/sinsyn.o -L/usr/lib -lnrniv -Wl,-rpath,/usr/lib -lreadline -lcurses -lform -lpython3 -lX11 -lXext) (cd .. ; rm -f x86_64/.libs/libnrnmech.so ; mkdir -p x86_64/.libs ; ln -s ../../x86_64/libnrnmech.so x86_64/.libs/libnrnmech.so) Successfully created x86_64/special running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/LFPy copying LFPy/__init__.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/alias_method.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/cell.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/eegmegcalc.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/inputgenerators.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/lfpcalc.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/network.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/pointprocess.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/recextelectrode.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/run_simulation.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/templatecell.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/tools.py -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/version.py -> build/lib.linux-x86_64-3.9/LFPy running egg_info creating LFPy.egg-info writing LFPy.egg-info/PKG-INFO writing dependency_links to LFPy.egg-info/dependency_links.txt writing requirements to LFPy.egg-info/requires.txt writing top-level names to LFPy.egg-info/top_level.txt writing manifest file 'LFPy.egg-info/SOURCES.txt' reading manifest file 'LFPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'x86_64' under directory 'LFPy/test' warning: no files found matching 'morphologies' under directory 'examples' warning: no files found matching '*' under directory 'documentation' warning: no files found matching '*' under directory 'html' writing manifest file 'LFPy.egg-info/SOURCES.txt' copying LFPy/alias_method.pyx -> build/lib.linux-x86_64-3.9/LFPy copying LFPy/run_simulation.pyx -> build/lib.linux-x86_64-3.9/LFPy creating build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/L23E_p23.hoc -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/__init__.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/ball_and_stick_template.hoc -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/ball_and_sticks.hoc -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/ball_and_sticks_w_lists.hoc -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/common.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/expsyni.mod -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/fem_mix_dip.npz -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/sinsyn.mod -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/stick.hoc -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/stick_template.hoc -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/sticks_not_connected_head_to_toe.hoc -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_alias_method.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_cell.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_eegmegcalc.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_imem.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_inputgenerators.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_lfpcalc.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_misc.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_morphology_import.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_network.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_networkcell.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_pointprocess.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_recextelectrode.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_templatecell.py -> build/lib.linux-x86_64-3.9/LFPy/test copying LFPy/test/test_tools.py -> build/lib.linux-x86_64-3.9/LFPy/test creating build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/expsyni.c -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/expsyni.mod -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/expsyni.o -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/libnrnmech.so -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/mod_func.c -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/mod_func.o -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/sinsyn.c -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/sinsyn.mod -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/sinsyn.o -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 copying LFPy/test/x86_64/special -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64 creating build/lib.linux-x86_64-3.9/LFPy/test/x86_64/.libs copying LFPy/test/x86_64/.libs/libnrnmech.so -> build/lib.linux-x86_64-3.9/LFPy/test/x86_64/.libs running build_ext cythoning LFPy/run_simulation.pyx to LFPy/run_simulation.c cythoning LFPy/alias_method.pyx to LFPy/alias_method.c building 'LFPy.run_simulation' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/LFPy gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c LFPy/run_simulation.c -o build/temp.linux-x86_64-3.9/LFPy/run_simulation.o In file included from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, from LFPy/run_simulation.c:610: /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.9/LFPy/run_simulation.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/LFPy/run_simulation.cpython-39-x86_64-linux-gnu.so building 'LFPy.alias_method' extension gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c LFPy/alias_method.c -o build/temp.linux-x86_64-3.9/LFPy/alias_method.o In file included from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, from LFPy/alias_method.c:610: /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.9/LFPy/alias_method.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/LFPy/alias_method.cpython-39-x86_64-linux-gnu.so + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.B2LDHH + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64 ++ dirname /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64 + cd LFPy-2.1.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64 which: no xcrun in (/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin) Creating x86_64 directory for .o files. /builddir/build/BUILD/LFPy-2.1.2/LFPy/test expsyni.mod sinsyn.mod expsyni.mod sinsyn.mod mkdir -p x86_64 -> Compiling mod_func.c cc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I.. -I/usr/include -fPIC -c mod_func.c -o mod_func.o -> NMODL expsyni.mod MODLUNIT=/usr/share/nrn/lib/nrnunits.lib \ /usr/bin/nocmodl expsyni.mod -> NMODL sinsyn.mod MODLUNIT=/usr/share/nrn/lib/nrnunits.lib \ /usr/bin/nocmodl sinsyn.mod Translating expsyni.mod into expsyni.c Thread Safe Translating sinsyn.mod into sinsyn.c Thread Safe -> Compiling x86_64/expsyni.c (cd .. ; cc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I.. -I/usr/include -fPIC -c x86_64/expsyni.c -o x86_64/expsyni.o) -> Compiling x86_64/sinsyn.c (cd .. ; cc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I.. -I/usr/include -fPIC -c x86_64/sinsyn.c -o x86_64/sinsyn.o) x86_64/expsyni.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } x86_64/expsyni.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | "exp_current", _hoc_exp_current, | { } 123 | "update_queue", _hoc_update_queue, | { } 124 | 0, 0 | { 125 | }; | } x86_64/expsyni.c:132:44: warning: missing braces around initializer [-Wmissing-braces] 132 | static HocParmLimits _hoc_parm_limits[] = { | ^ 133 | "tau", 1e-09, 1e+09, | { { }} 134 | 0,0,0 | { { 135 | }; | }} x86_64/expsyni.c:136:42: warning: missing braces around initializer [-Wmissing-braces] 136 | static HocParmUnits _hoc_parm_units[] = { | ^ 137 | "tau", "ms", | { } 138 | "i", "nA", | { } 139 | 0,0 | { 140 | }; | } x86_64/expsyni.c:142:33: warning: missing braces around initializer [-Wmissing-braces] 142 | static DoubScal hoc_scdoub[] = { | ^ 143 | 0,0 | { 144 | }; | } x86_64/expsyni.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } x86_64/expsyni.c: In function ‘nrn_alloc’: x86_64/expsyni.c:172:8: warning: unused variable ‘prop_ion’ [-Wunused-variable] 172 | Prop *prop_ion; | ^~~~~~~~ x86_64/expsyni.c: In function ‘_expsyni_reg’: x86_64/expsyni.c:201:6: warning: unused variable ‘_vectorized’ [-Wunused-variable] 201 | int _vectorized = 1; | ^~~~~~~~~~~ x86_64/expsyni.c: In function ‘update_queue_ExpSynI’: x86_64/expsyni.c:233:9: warning: unused variable ‘_lk’ [-Wunused-variable] 233 | double _lk ; | ^~~ x86_64/expsyni.c: In function ‘_net_receive__ExpSynI’: x86_64/expsyni.c:278:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ x86_64/expsyni.c:278:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ x86_64/expsyni.c: In function ‘initmodel’: x86_64/expsyni.c:293:18: warning: unused variable ‘_save’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~~~~ x86_64/expsyni.c:293:7: warning: unused variable ‘_i’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~ x86_64/expsyni.c: In function ‘_nrn_current__ExpSynI’: x86_64/expsyni.c:328:11: warning: unused variable ‘_lk’ [-Wunused-variable] 328 | double _lk , _lexpired_spikes , _lx ; | ^~~ x86_64/expsyni.c: In function ‘_nrn_jacob__ExpSynI’: x86_64/expsyni.c:386:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ x86_64/expsyni.c:386:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ x86_64/expsyni.c: In function ‘_initlists’: x86_64/expsyni.c:417:6: warning: unused variable ‘_i’ [-Wunused-variable] 417 | int _i; static int _first = 1; | ^~ x86_64/expsyni.c:416:21: warning: unused variable ‘_p’ [-Wunused-variable] 416 | double _x; double* _p = &_x; | ^~ At top level: x86_64/expsyni.c:413:13: warning: ‘terminal’ defined but not used [-Wunused-function] 413 | static void terminal(){} | ^~~~~~~~ x86_64/expsyni.c:229:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 229 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ x86_64/expsyni.c:227:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 227 | static int _ninits = 0; | ^~~~~~~ x86_64/expsyni.c:226:12: warning: ‘error’ defined but not used [-Wunused-variable] 226 | static int error; | ^~~~~ x86_64/expsyni.c:224:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 224 | static char *modelname = "Exponential-function synaptic current, with NET_RECEIVE"; | ^~~~~~~~~ x86_64/expsyni.c:223:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 223 | static int _reset; | ^~~~~~ x86_64/expsyni.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ x86_64/expsyni.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ x86_64/sinsyn.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } x86_64/sinsyn.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | 0, 0 | { 123 | }; | } x86_64/sinsyn.c:128:44: warning: missing braces around initializer [-Wmissing-braces] 128 | static HocParmLimits _hoc_parm_limits[] = { | ^ 129 | 0,0,0 | { { 130 | }; | }} x86_64/sinsyn.c:131:42: warning: missing braces around initializer [-Wmissing-braces] 131 | static HocParmUnits _hoc_parm_units[] = { | ^ 132 | "del", "ms", | { } 133 | "dur", "ms", | { } 134 | "pkamp", "nA", | { } 135 | "freq", "Hz", | { } 136 | "bias", "nA", | { } 137 | "i", "nA", | { } 138 | 0,0 | { 139 | }; | } x86_64/sinsyn.c:141:33: warning: missing braces around initializer [-Wmissing-braces] 141 | static DoubScal hoc_scdoub[] = { | ^ 142 | "PI_SinSyn", &PI_SinSyn, | { } 143 | 0,0 | { 144 | }; | } x86_64/sinsyn.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } x86_64/sinsyn.c: In function ‘nrn_alloc’: x86_64/sinsyn.c:176:8: warning: unused variable ‘prop_ion’ [-Wunused-variable] 176 | Prop *prop_ion; | ^~~~~~~~ x86_64/sinsyn.c: In function ‘_sinsyn_reg’: x86_64/sinsyn.c:210:6: warning: unused variable ‘_vectorized’ [-Wunused-variable] 210 | int _vectorized = 1; | ^~~~~~~~~~~ x86_64/sinsyn.c: In function ‘_net_receive__SinSyn’: x86_64/sinsyn.c:241:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ x86_64/sinsyn.c:241:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ x86_64/sinsyn.c: In function ‘initmodel’: x86_64/sinsyn.c:248:18: warning: unused variable ‘_save’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~~~~ x86_64/sinsyn.c:248:7: warning: unused variable ‘_i’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~ x86_64/sinsyn.c: In function ‘_nrn_jacob__SinSyn’: x86_64/sinsyn.c:337:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ x86_64/sinsyn.c:337:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ x86_64/sinsyn.c: In function ‘_initlists’: x86_64/sinsyn.c:368:6: warning: unused variable ‘_i’ [-Wunused-variable] 368 | int _i; static int _first = 1; | ^~ x86_64/sinsyn.c:367:21: warning: unused variable ‘_p’ [-Wunused-variable] 367 | double _x; double* _p = &_x; | ^~ x86_64/expsyni.c: In function ‘update_queue_ExpSynI’: x86_64/expsyni.c:240:8: warning: ‘_lupdate_queue’ is used uninitialized in this function [-Wuninitialized] 240 | return _lupdate_queue; | ^~~~~~~~~~~~~~ At top level: x86_64/sinsyn.c:364:13: warning: ‘terminal’ defined but not used [-Wunused-function] 364 | static void terminal(){} | ^~~~~~~~ x86_64/sinsyn.c:238:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 238 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ x86_64/sinsyn.c:236:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 236 | static int _ninits = 0; | ^~~~~~~ x86_64/sinsyn.c:235:12: warning: ‘error’ defined but not used [-Wunused-variable] 235 | static int error; | ^~~~~ x86_64/sinsyn.c:233:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 233 | static char *modelname = ""; | ^~~~~~~~~ x86_64/sinsyn.c:232:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 232 | static int _reset; | ^~~~~~ x86_64/sinsyn.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ x86_64/sinsyn.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ x86_64/sinsyn.c:71:16: warning: ‘_extcall_thread’ defined but not used [-Wunused-variable] 71 | static Datum* _extcall_thread; | ^~~~~~~~~~~~~~~ x86_64/sinsyn.c: In function ‘nrn_alloc’: x86_64/sinsyn.c:197:17: warning: ‘_ppvar’ may be used uninitialized in this function [-Wmaybe-uninitialized] 197 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ x86_64/expsyni.c: In function ‘nrn_alloc’: x86_64/expsyni.c:188:17: warning: ‘_ppvar’ may be used uninitialized in this function [-Wmaybe-uninitialized] 188 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ => LINKING library x86_64/libnrnmech.so Mod files: expsyni.mod sinsyn.mod (cd .. ; g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -shared -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -I /usr/include -o x86_64/libnrnmech.so -Wl,-soname,libnrnmech.so \ x86_64/mod_func.o x86_64/expsyni.o x86_64/sinsyn.o -L/usr/lib -lnrniv -Wl,-rpath,/usr/lib -lreadline -lcurses -lform -lpython3 -lX11 -lXext) (cd .. ; rm -f x86_64/.libs/libnrnmech.so ; mkdir -p x86_64/.libs ; ln -s ../../x86_64/libnrnmech.so x86_64/.libs/libnrnmech.so) Successfully created x86_64/special running install running install_lib creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9 creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/__init__.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/alias_method.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/cell.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/eegmegcalc.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/inputgenerators.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/lfpcalc.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/network.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/pointprocess.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/recextelectrode.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/run_simulation.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/templatecell.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/tools.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/version.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/alias_method.pyx -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/run_simulation.pyx -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/L23E_p23.hoc -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/__init__.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/ball_and_stick_template.hoc -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/ball_and_sticks.hoc -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/ball_and_sticks_w_lists.hoc -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/common.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/expsyni.mod -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/fem_mix_dip.npz -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/sinsyn.mod -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/stick.hoc -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/stick_template.hoc -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/sticks_not_connected_head_to_toe.hoc -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_alias_method.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_cell.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_eegmegcalc.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_imem.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_inputgenerators.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_lfpcalc.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_misc.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_morphology_import.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_network.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_networkcell.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_pointprocess.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_recextelectrode.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_templatecell.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test copying build/lib.linux-x86_64-3.9/LFPy/test/test_tools.py -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/expsyni.c -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/expsyni.mod -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/expsyni.o -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/libnrnmech.so -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/mod_func.c -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/mod_func.o -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/sinsyn.c -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/sinsyn.mod -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/sinsyn.o -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/special -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64 creating /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64/.libs copying build/lib.linux-x86_64-3.9/LFPy/test/x86_64/.libs/libnrnmech.so -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64/.libs copying build/lib.linux-x86_64-3.9/LFPy/run_simulation.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy copying build/lib.linux-x86_64-3.9/LFPy/alias_method.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/alias_method.py to alias_method.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/cell.py to cell.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/eegmegcalc.py to eegmegcalc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/inputgenerators.py to inputgenerators.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/lfpcalc.py to lfpcalc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/network.py to network.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/pointprocess.py to pointprocess.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/recextelectrode.py to recextelectrode.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/run_simulation.py to run_simulation.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/templatecell.py to templatecell.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/tools.py to tools.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/version.py to version.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/common.py to common.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_alias_method.py to test_alias_method.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_cell.py to test_cell.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_eegmegcalc.py to test_eegmegcalc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_imem.py to test_imem.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_inputgenerators.py to test_inputgenerators.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_lfpcalc.py to test_lfpcalc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_misc.py to test_misc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_morphology_import.py to test_morphology_import.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_network.py to test_network.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_networkcell.py to test_networkcell.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_pointprocess.py to test_pointprocess.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_recextelectrode.py to test_recextelectrode.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_templatecell.py to test_templatecell.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/test_tools.py to test_tools.cpython-39.pyc writing byte-compilation script '/tmp/tmpxe8d4bx2.py' /usr/bin/python3 /tmp/tmpxe8d4bx2.py removing /tmp/tmpxe8d4bx2.py running install_egg_info running egg_info writing LFPy.egg-info/PKG-INFO writing dependency_links to LFPy.egg-info/dependency_links.txt writing requirements to LFPy.egg-info/requires.txt writing top-level names to LFPy.egg-info/top_level.txt reading manifest file 'LFPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'x86_64' under directory 'LFPy/test' warning: no files found matching 'morphologies' under directory 'examples' warning: no files found matching '*' under directory 'documentation' warning: no files found matching '*' under directory 'html' writing manifest file 'LFPy.egg-info/SOURCES.txt' Copying LFPy.egg-info to /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy-2.1.2-py3.9.egg-info running install_scripts + rm -rfv /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/bin/__pycache__ + /usr/lib/rpm/find-debuginfo.sh -j48 --strict-build-id -m -i --build-id-seed 2.1.2-1.fc33 --unique-debug-suffix -2.1.2-1.fc33.x86_64 --unique-debug-src-base python-lfpy-2.1.2-1.fc33.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/LFPy-2.1.2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/run_simulation.cpython-39-x86_64-linux-gnu.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64/libnrnmech.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/alias_method.cpython-39-x86_64-linux-gnu.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64/.libs/libnrnmech.so extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64/libnrnmech.so extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/alias_method.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/run_simulation.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages/LFPy/test/x86_64/.libs/libnrnmech.so original debug info size: 1280kB, size after compression: 1216kB /usr/lib/rpm/sepdebugcrcfix: Updated 4 CRC32s, 0 CRC32s did match. 1944 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9 using /usr/bin/python3.9 Bytecompiling .py files below /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib/debug/usr/lib64/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/python3.9/site-packages/LFPy/test/x86_64/special from /bin/sh to #!/usr/bin/sh Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.XstvcI + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.1.2 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 1325833 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/mpich-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + export 'CFLAGS= -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/bin:/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib/python3.9/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/pytest LFPy/test/ ============================= test session starts ============================== platform linux -- Python 3.9.0, pytest-6.0.2, py-1.9.0, pluggy-0.13.1 rootdir: /builddir/build/BUILD/LFPy-2.1.2 collected 305 items LFPy/test/test_alias_method.py ..... [ 1%] LFPy/test/test_cell.py ................................................. [ 17%] ................................... [ 29%] LFPy/test/test_eegmegcalc.py ................................. [ 40%] LFPy/test/test_imem.py ..... [ 41%] LFPy/test/test_inputgenerators.py . [ 41%] LFPy/test/test_lfpcalc.py ...................... [ 49%] LFPy/test/test_misc.py .. [ 49%] LFPy/test/test_morphology_import.py . [ 50%] LFPy/test/test_network.py ....... [ 52%] LFPy/test/test_networkcell.py .......................................... [ 66%] ............... [ 71%] LFPy/test/test_pointprocess.py ........... [ 74%] LFPy/test/test_recextelectrode.py .................. [ 80%] LFPy/test/test_templatecell.py ......................................... [ 94%] ................ [ 99%] LFPy/test/test_tools.py .. [100%] =============================== warnings summary =============================== LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_12 LFPy/test/test_cell.py::testCell::test_get_multi_current_dipole_moments_04 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential_01 LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_04 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 0 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_13 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential_02 LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 4 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_eegmegcalc.py::testFourSphereVolumeConductor::test_rz_params /builddir/build/BUILD/LFPy-2.1.2/LFPy/eegmegcalc.py:405: RuntimeWarning: invalid value encountered in true_divide self._z = self._rzloc/self._rz LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 6 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 10 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 14 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 18 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 8 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 12 sections detected! Consider setting 'delete_sections=True' warn(mssg) -- Docs: https://docs.pytest.org/en/stable/warnings.html ================= 305 passed, 31 warnings in 146.44s (0:02:26) ================= + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 1325833 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/mpich-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 1325833 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/bin:/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib/python3.9/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/pytest LFPy/test/ ============================= test session starts ============================== platform linux -- Python 3.9.0, pytest-6.0.2, py-1.9.0, pluggy-0.13.1 rootdir: /builddir/build/BUILD/LFPy-2.1.2 collected 305 items LFPy/test/test_alias_method.py ..... [ 1%] LFPy/test/test_cell.py ................................................. [ 17%] ................................... [ 29%] LFPy/test/test_eegmegcalc.py ................................. [ 40%] LFPy/test/test_imem.py ..... [ 41%] LFPy/test/test_inputgenerators.py . [ 41%] LFPy/test/test_lfpcalc.py ...................... [ 49%] LFPy/test/test_misc.py .. [ 49%] LFPy/test/test_morphology_import.py . [ 50%] LFPy/test/test_network.py ....... [ 52%] LFPy/test/test_networkcell.py .......................................... [ 66%] ............... [ 71%] LFPy/test/test_pointprocess.py ........... [ 74%] LFPy/test/test_recextelectrode.py .................. [ 80%] LFPy/test/test_templatecell.py ......................................... [ 94%] ................ [ 99%] LFPy/test/test_tools.py .. [100%] =============================== warnings summary =============================== LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_12 LFPy/test/test_cell.py::testCell::test_get_multi_current_dipole_moments_04 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential_01 LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_04 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 0 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_13 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential_02 LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 4 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_eegmegcalc.py::testFourSphereVolumeConductor::test_rz_params /builddir/build/BUILD/LFPy-2.1.2/LFPy/eegmegcalc.py:405: RuntimeWarning: invalid value encountered in true_divide self._z = self._rzloc/self._rz LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 6 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 10 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 14 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetworkPopulation::test_NetworkPopulation_00 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 18 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 8 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py::testNetwork::test_Network_00 LFPy/test/test_network.py::testNetwork::test_Network_01 LFPy/test/test_network.py::testNetwork::test_Network_02 LFPy/test/test_network.py::testNetwork::test_Network_03 LFPy/test/test_network.py::testNetwork::test_Network_05 /builddir/build/BUILD/LFPy-2.1.2/LFPy/cell.py:184: UserWarning: 12 sections detected! Consider setting 'delete_sections=True' warn(mssg) -- Docs: https://docs.pytest.org/en/stable/warnings.html ================= 305 passed, 31 warnings in 148.34s (0:02:28) ================= + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 1325833 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + rm -rf /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64//usr/lib64/python3.9/site-packages/LFPy/test/ + rm -rf /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/lib/debug//usr/lib64/python3.9/site-packages/LFPy/test/ + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-lfpy-2.1.2-1.fc33.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VRveDF + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.1.2 + DOCDIR=/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/share/doc/python3-lfpy + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/share/doc/python3-lfpy + cp -pr README.md /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/share/doc/python3-lfpy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.zKZ3TG + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.1.2 + LICENSEDIR=/builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/share/licenses/python3-lfpy + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/share/licenses/python3-lfpy + cp -pr LICENSE /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64/usr/share/licenses/python3-lfpy + RPM_EC=0 ++ jobs -p + exit 0 Provides: python3-lfpy = 2.1.2-1.fc33 python3-lfpy(x86-64) = 2.1.2-1.fc33 python3.9dist(lfpy) = 2.1.2 python3dist(lfpy) = 2.1.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) python(abi) = 3.9 python3.9dist(cython) >= 0.20 python3.9dist(h5py) >= 2.5 python3.9dist(meautility) >= 1.4.2 python3.9dist(neuron) >= 7.6.4 python3.9dist(numpy) >= 1.8 python3.9dist(scipy) >= 0.14 rtld(GNU_HASH) Processing files: python-lfpy-debugsource-2.1.2-1.fc33.x86_64 Provides: python-lfpy-debugsource = 2.1.2-1.fc33 python-lfpy-debugsource(x86-64) = 2.1.2-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-lfpy-debuginfo-2.1.2-1.fc33.x86_64 Provides: debuginfo(build-id) = 7266f4c2722ff8d65f495f6981ae76bcf0bad3ed debuginfo(build-id) = 90e79f34c378e53b5555da4047349ebd3c99dc57 python-lfpy-debuginfo = 2.1.2-1.fc33 python3-lfpy-debuginfo = 2.1.2-1.fc33 python3-lfpy-debuginfo(x86-64) = 2.1.2-1.fc33 python3.9-lfpy-debuginfo = 2.1.2-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-lfpy-debugsource(x86-64) = 2.1.2-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64 Wrote: /builddir/build/RPMS/python3-lfpy-2.1.2-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-lfpy-debuginfo-2.1.2-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python-lfpy-debugsource-2.1.2-1.fc33.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.gB3SSF + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.1.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-lfpy-2.1.2-1.fc33.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0