Mock Version: 1.1.8
Mock Version: 1.1.8
ENTER do(['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/mmseq.spec'], False, '/var/lib/mock/dist-6E-epel-build-1122659-173735/root/', None, 86400, True, 0, 497, 497, None, logger=<mock.trace_decorator.getLog object at 0x14d4b50>)
Executing command: ['bash', '--login', '-c', 'rpmbuild -bs --target x86_64 --nodeps builddir/build/SPECS/mmseq.spec']
warning: Could not canonicalize hostname: x86-10.phx2.fedoraproject.org
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/mmseq-0.9.12-1.el6.src.rpm
Child returncode was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/mmseq.spec'], False, '/var/lib/mock/dist-6E-epel-build-1122659-173735/root/', None, 86400, True, 0, 497, 497, None, logger=<mock.trace_decorator.getLog object at 0x14d4b50>)
Executing command: ['bash', '--login', '-c', 'rpmbuild -bb --target x86_64 --nodeps builddir/build/SPECS/mmseq.spec']
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Miluof
+ umask 022
+ cd /builddir/build/BUILD
+ LANG=C
+ export LANG
+ unset DISPLAY
+ cd /builddir/build/BUILD
+ rm -rf mmseq_0.9.12
+ /usr/bin/unzip -qq /builddir/build/SOURCES/mmseq_0.9.12.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq_0.9.12
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (mmseq-sam-header.patch):
+ echo 'Patch #0 (mmseq-sam-header.patch):'
+ /bin/cat /builddir/build/SOURCES/mmseq-sam-header.patch
+ /usr/bin/patch -s -p1 -b --suffix .mmseq-sam-header.patch --fuzz=0
Patch #1 (mmseq-flags.patch):
+ echo 'Patch #1 (mmseq-flags.patch):'
+ /bin/cat /builddir/build/SOURCES/mmseq-flags.patch
+ /usr/bin/patch -s -p1 -b --suffix .mmseq-flags.patch --fuzz=0
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /bin/cat /builddir/build/SOURCES/mmseq-zlib.patch
+ /usr/bin/patch -s -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
+ rm bam2hits-0.9.12-Darwin-x86_64 bam2hits-0.9.12-Linux-x86_64
+ rm mmseq-0.9.12-Darwin-x86_64 mmseq-0.9.12-Linux-x86_64
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.lUFK6x
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq_0.9.12
+ LANG=C
+ export LANG
+ unset DISPLAY
+ make -j8 'CXXFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic'
g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c sokal.cc
gcc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c fasta.c
g++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fopenmp fasta.o bam2hits.cpp -o bam2hits -lboost_regex -lbam -Wl,--as-needed -lz
g++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fopenmp sokal.o mmseq.cpp -o mmseq -lgsl -lgslcblas 
bam2hits.cpp: In function 'void outputMergeHeaders(std::vector<FastaRecord, std::allocator<FastaRecord> >&, char, const char*, bool, std::ostream&)':
bam2hits.cpp:72: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:80: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:91: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp: In function 'int main(int, char**)':
bam2hits.cpp:366: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:368: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:370: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:397: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:424: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:438: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:441: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:442: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:571: warning: comparison between signed and unsigned integer expressions
bam2hits.cpp:450: warning: unused variable 'binpath'
mmseq.cpp: In function 'int main(int, char**)':
mmseq.cpp:158: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:162: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:213: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:214: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:386: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:494: warning: unused variable 'threadid'
mmseq.cpp:624: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:652: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:671: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:699: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:703: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:711: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:712: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:738: warning: comparison between signed and unsigned integer expressions
mmseq.cpp:755: warning: comparison between signed and unsigned integer expressions
/tmp/cczR5r5n.o: In function `main':
/builddir/build/BUILD/mmseq_0.9.12/bam2hits.cpp:432: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
/tmp/ccebOWkB.o: In function `main':
/builddir/build/BUILD/mmseq_0.9.12/mmseq.cpp:543: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.OjhCD9
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64
++ dirname /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64
+ cd mmseq_0.9.12
+ LANG=C
+ export LANG
+ unset DISPLAY
+ rm -rf /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64
+ mkdir -p /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin
+ install -p -m 0755 bam2hits /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin
+ install -p -m 0755 mmseq /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin
+ install -p -m 0755 fastagrep.sh pileup.sh routeB.sh /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin
+ install -p -m 0755 filterGTF.rb get_isize.rb haploref.rb testregexp.rb /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin
+ install -p -m 0755 ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id /builddir/build/BUILD/mmseq_0.9.12
extracting debug info from /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin/mmseq
extracting debug info from /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/bin/bam2hits
132 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
+ /usr/lib/rpm/brp-python-bytecompile
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Processing files: mmseq-0.9.12-1.el6.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.DAsttM
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq_0.9.12
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/share/doc/mmseq-0.9.12
+ export DOCDIR
+ rm -rf /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/share/doc/mmseq-0.9.12
+ /bin/mkdir -p /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/share/doc/mmseq-0.9.12
+ cp -pr AUTHORS COPYING /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64/usr/share/doc/mmseq-0.9.12
+ exit 0
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /bin/bash /usr/bin/env libbam.so.1()(64bit) libboost_regex.so.5()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.0()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debuginfo-0.9.12-1.el6.x86_64
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64
warning: Could not canonicalize hostname: x86-10.phx2.fedoraproject.org
Wrote: /builddir/build/RPMS/mmseq-0.9.12-1.el6.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-0.9.12-1.el6.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.JOb4uG
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq_0.9.12
+ rm -rf /builddir/build/BUILDROOT/mmseq-0.9.12-1.el6.x86_64
+ exit 0
Child returncode was: 0
LEAVE do -->